Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0326 ATGTCAACAATGTCATCGGAAGGAATAGGAAGGTCGCCGTTACCTTTGCTGTTCAGAAGGCATTCAAGCGGCGAAATTAAAAACTTGACGTCGGTTTCCAGCAGTCTCTTGCCGGCGTTTGGAACAGTTGTCAACGACGGATATACAAACCTGAAGAAGTTGGTTATAGTTCCCTATGACAGAAGATATCGGTGGTGGCAGACTTTCCTGGTAGTGCTAGTGGTATATTCAGCGTGGGCATCTCCCTTTGAACTTGCCTTCAAGCAAGTAGCAACTGGGTCTCTCTTACCCGTTGATTTAGTGGTTGATGCCTTCTTTGCCTTTGATATTGTCTTGACCTTTTTCGTTGCTTACTTGGATAAATCCACCTATCTCCTCGTTGATGATCATAAGAAGATTGCTACACGTTACCTTACCAGCCTGTGGTTCCCTATGGACGTAGCTTCCACTCTTCCATTTCAGATGATATACAGAATTTTCACTGGAAAAATGCACCGCAATGAGGTCTTTGGCTTCCTCAACTTGCTTCGGTTTTGGCGACTGAGGCGTGTTAGTGAACTCTTCACAAGGTTGGAAAAAGACATACGCTTCAGTTACTTCTTGACAAGACTCATCAAACTAGTTTGTGTTACACTTCTGGCAGTGCACTCAGCCGGTTGTTTCTACTACTGGCTCGCAATTCATCATAAAGATTCAGAAAATACATGGATTGGAATCGAAGTCCCGGATTTCGAAAGCAGAAGCATCTGGCTCGGCTACACCTATTCCATATATTGGTCCATCGTCACACTTGCTACTGTCGGTTATGGGGACTTGCATGCAGTTAATACCGGGGAGAAGATTTTTAGCATCTTCTATATGCTATTCAACATTGGCCTCACTGCCTATTTGATTGGAAACATGACAAATCTCATTGTTCACAGTGCTATTCGAACTTTCATAATGAGAGATTCGATAAATGAGATACTTCGTTACGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCACACATGCAGCTCAAGTTCAAGACAGTAGAGTTGCAGCAAGAAGAAGTGTTGGAGGATTTACCTAAAGCTATAAGATCCAGTATTGCTCAGCATCTTTTCCGTCAAACAGTAGAAAATGCATACTTATTCAAGGGATTCTCTGAAGACATCATTGTCCAATTGGTGTCGGATATGAAAGCAGAGTACTTTCCACCTAAAGTTGATATTATTATACAAAATGAAATACCCACAGATTTCTACATTATGGTGTCTGGATCAGTAGATGTCATCGCGTACAAGAATGGAACTGAACAGATTGTGTCAAAGCTGGAATCTTCAGAGATGGCAGGGGAAATCGCAGTAATGTTGAATATCCCACAACCATTTACAGTGAGAACCAAGAGAATCTCTCAGGTCATCCGGATTAGTCATCATCATTTTAAGCAAATTGTACAACCAAACAACGAAGATGGAATAAAACTTATCGCCAATTTCACTGAGCACTTGAAGGGGTTGAAAAAAGTGGAGCAAGATGAAATACCCTACTTATCAGAATTGCTAGAAGACCTTAATAAAGAGCATACAGAACCAGATGAGACACAAAATCAGAGAGTACCAAATTATCATGGAGATCAAAAAATGGAAGGAATGCAAGAAGCATCTAGTCCATTGCCACCTAAAGCTCCCATCAGGGTGATAATTCATGCGCATCATCCTGATGAAAGTTCGAAAGATGGTAACAGCACGGGAAAACTGATACTTCTACCCAAGTCAATTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAGGAGAGGGGGCTCAATTCTCATGCTTGATGGCTCAAAAGTCGAAGATCTGAATGCTTTAAGGGAGAGTGATCACGTATTCATTGTTTGA 1905 41.63 MSTMSSEGIGRSPLPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVNDGYTNLKKLVIVPYDRRYRWWQTFLVVLVVYSAWASPFELAFKQVATGSLLPVDLVVDAFFAFDIVLTFFVAYLDKSTYLLVDDHKKIATRYLTSLWFPMDVASTLPFQMIYRIFTGKMHRNEVFGFLNLLRFWRLRRVSELFTRLEKDIRFSYFLTRLIKLVCVTLLAVHSAGCFYYWLAIHHKDSENTWIGIEVPDFESRSIWLGYTYSIYWSIVTLATVGYGDLHAVNTGEKIFSIFYMLFNIGLTAYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTVELQQEEVLEDLPKAIRSSIAQHLFRQTVENAYLFKGFSEDIIVQLVSDMKAEYFPPKVDIIIQNEIPTDFYIMVSGSVDVIAYKNGTEQIVSKLESSEMAGEIAVMLNIPQPFTVRTKRISQVIRISHHHFKQIVQPNNEDGIKLIANFTEHLKGLKKVEQDEIPYLSELLEDLNKEHTEPDETQNQRVPNYHGDQKMEGMQEASSPLPPKAPIRVIIHAHHPDESSKDGNSTGKLILLPKSIEELFGLAEKRFGRRGGSILMLDGSKVEDLNALRESDHVFIV 634
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 1876562 1883574 + evm.model.ptg000002l.1333 HCH12g0326 555173
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0326 634 Pfam KHA, dimerisation domain of potassium ion channel 565 633 IPR021789 -
HCH12g0326 634 Gene3D - 65 307 - -
HCH12g0326 634 PRINTS EAG/ELK/ERG potassium channel family signature 99 109 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH12g0326 634 PRINTS EAG/ELK/ERG potassium channel family signature 279 290 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH12g0326 634 PRINTS EAG/ELK/ERG potassium channel family signature 297 306 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH12g0326 634 PRINTS EAG/ELK/ERG potassium channel family signature 110 119 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH12g0326 634 PRINTS EAG/ELK/ERG potassium channel family signature 253 270 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH12g0326 634 SMART cnmp_10 383 500 IPR000595 -
HCH12g0326 634 Pfam Cyclic nucleotide-binding domain 403 486 IPR000595 -
HCH12g0326 634 FunFam Potassium channel KAT3 65 307 - -
HCH12g0326 634 Gene3D Jelly Rolls 348 510 IPR014710 -
HCH12g0326 634 ProSiteProfiles KHA domain profile. 565 634 IPR021789 -
HCH12g0326 634 CDD CAP_ED 383 496 IPR000595 -
HCH12g0326 634 FunFam Potassium channel KAT2 371 507 - -
HCH12g0326 634 MobiDBLite consensus disorder prediction 527 558 - -
HCH12g0326 634 Pfam Ion transport protein 63 307 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH12g0326 634 ProSiteProfiles cAMP/cGMP binding motif profile. 383 502 IPR000595 -
HCH12g0326 634 PANTHER POTASSIUM CHANNEL AKT1 24 527 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
HCH12g0326 634 SUPERFAMILY Voltage-gated potassium channels 58 306 - -
HCH12g0326 634 SUPERFAMILY cAMP-binding domain-like 312 502 IPR018490 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0326 HCH-Chr12:1876562 HCH3g0767 HCH-Chr3:5582232 7.90E-134 dispersed
HCH12g0326 HCH-Chr12:1876562 HCH8g0800 HCH-Chr8:44580236 6.30E-06 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0326 K21867 - csv:101215177 1082.4