Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g0326 | ATGTCAACAATGTCATCGGAAGGAATAGGAAGGTCGCCGTTACCTTTGCTGTTCAGAAGGCATTCAAGCGGCGAAATTAAAAACTTGACGTCGGTTTCCAGCAGTCTCTTGCCGGCGTTTGGAACAGTTGTCAACGACGGATATACAAACCTGAAGAAGTTGGTTATAGTTCCCTATGACAGAAGATATCGGTGGTGGCAGACTTTCCTGGTAGTGCTAGTGGTATATTCAGCGTGGGCATCTCCCTTTGAACTTGCCTTCAAGCAAGTAGCAACTGGGTCTCTCTTACCCGTTGATTTAGTGGTTGATGCCTTCTTTGCCTTTGATATTGTCTTGACCTTTTTCGTTGCTTACTTGGATAAATCCACCTATCTCCTCGTTGATGATCATAAGAAGATTGCTACACGTTACCTTACCAGCCTGTGGTTCCCTATGGACGTAGCTTCCACTCTTCCATTTCAGATGATATACAGAATTTTCACTGGAAAAATGCACCGCAATGAGGTCTTTGGCTTCCTCAACTTGCTTCGGTTTTGGCGACTGAGGCGTGTTAGTGAACTCTTCACAAGGTTGGAAAAAGACATACGCTTCAGTTACTTCTTGACAAGACTCATCAAACTAGTTTGTGTTACACTTCTGGCAGTGCACTCAGCCGGTTGTTTCTACTACTGGCTCGCAATTCATCATAAAGATTCAGAAAATACATGGATTGGAATCGAAGTCCCGGATTTCGAAAGCAGAAGCATCTGGCTCGGCTACACCTATTCCATATATTGGTCCATCGTCACACTTGCTACTGTCGGTTATGGGGACTTGCATGCAGTTAATACCGGGGAGAAGATTTTTAGCATCTTCTATATGCTATTCAACATTGGCCTCACTGCCTATTTGATTGGAAACATGACAAATCTCATTGTTCACAGTGCTATTCGAACTTTCATAATGAGAGATTCGATAAATGAGATACTTCGTTACGGAAGCAAGAATAGACTGCCAGAAGGCTTGAAAGATCAAATGTTGGCACACATGCAGCTCAAGTTCAAGACAGTAGAGTTGCAGCAAGAAGAAGTGTTGGAGGATTTACCTAAAGCTATAAGATCCAGTATTGCTCAGCATCTTTTCCGTCAAACAGTAGAAAATGCATACTTATTCAAGGGATTCTCTGAAGACATCATTGTCCAATTGGTGTCGGATATGAAAGCAGAGTACTTTCCACCTAAAGTTGATATTATTATACAAAATGAAATACCCACAGATTTCTACATTATGGTGTCTGGATCAGTAGATGTCATCGCGTACAAGAATGGAACTGAACAGATTGTGTCAAAGCTGGAATCTTCAGAGATGGCAGGGGAAATCGCAGTAATGTTGAATATCCCACAACCATTTACAGTGAGAACCAAGAGAATCTCTCAGGTCATCCGGATTAGTCATCATCATTTTAAGCAAATTGTACAACCAAACAACGAAGATGGAATAAAACTTATCGCCAATTTCACTGAGCACTTGAAGGGGTTGAAAAAAGTGGAGCAAGATGAAATACCCTACTTATCAGAATTGCTAGAAGACCTTAATAAAGAGCATACAGAACCAGATGAGACACAAAATCAGAGAGTACCAAATTATCATGGAGATCAAAAAATGGAAGGAATGCAAGAAGCATCTAGTCCATTGCCACCTAAAGCTCCCATCAGGGTGATAATTCATGCGCATCATCCTGATGAAAGTTCGAAAGATGGTAACAGCACGGGAAAACTGATACTTCTACCCAAGTCAATTGAAGAACTTTTCGGATTGGCAGAGAAAAGATTTGGCAGGAGAGGGGGCTCAATTCTCATGCTTGATGGCTCAAAAGTCGAAGATCTGAATGCTTTAAGGGAGAGTGATCACGTATTCATTGTTTGA | 1905 | 41.63 | MSTMSSEGIGRSPLPLLFRRHSSGEIKNLTSVSSSLLPAFGTVVNDGYTNLKKLVIVPYDRRYRWWQTFLVVLVVYSAWASPFELAFKQVATGSLLPVDLVVDAFFAFDIVLTFFVAYLDKSTYLLVDDHKKIATRYLTSLWFPMDVASTLPFQMIYRIFTGKMHRNEVFGFLNLLRFWRLRRVSELFTRLEKDIRFSYFLTRLIKLVCVTLLAVHSAGCFYYWLAIHHKDSENTWIGIEVPDFESRSIWLGYTYSIYWSIVTLATVGYGDLHAVNTGEKIFSIFYMLFNIGLTAYLIGNMTNLIVHSAIRTFIMRDSINEILRYGSKNRLPEGLKDQMLAHMQLKFKTVELQQEEVLEDLPKAIRSSIAQHLFRQTVENAYLFKGFSEDIIVQLVSDMKAEYFPPKVDIIIQNEIPTDFYIMVSGSVDVIAYKNGTEQIVSKLESSEMAGEIAVMLNIPQPFTVRTKRISQVIRISHHHFKQIVQPNNEDGIKLIANFTEHLKGLKKVEQDEIPYLSELLEDLNKEHTEPDETQNQRVPNYHGDQKMEGMQEASSPLPPKAPIRVIIHAHHPDESSKDGNSTGKLILLPKSIEELFGLAEKRFGRRGGSILMLDGSKVEDLNALRESDHVFIV | 634 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1876562 | 1883574 | + | evm.model.ptg000002l.1333 | HCH12g0326 | 555173 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g0326 | 634 | Pfam | KHA, dimerisation domain of potassium ion channel | 565 | 633 | IPR021789 | - | |
| HCH12g0326 | 634 | Gene3D | - | 65 | 307 | - | - | |
| HCH12g0326 | 634 | PRINTS | EAG/ELK/ERG potassium channel family signature | 99 | 109 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH12g0326 | 634 | PRINTS | EAG/ELK/ERG potassium channel family signature | 279 | 290 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH12g0326 | 634 | PRINTS | EAG/ELK/ERG potassium channel family signature | 297 | 306 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH12g0326 | 634 | PRINTS | EAG/ELK/ERG potassium channel family signature | 110 | 119 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH12g0326 | 634 | PRINTS | EAG/ELK/ERG potassium channel family signature | 253 | 270 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH12g0326 | 634 | SMART | cnmp_10 | 383 | 500 | IPR000595 | - | |
| HCH12g0326 | 634 | Pfam | Cyclic nucleotide-binding domain | 403 | 486 | IPR000595 | - | |
| HCH12g0326 | 634 | FunFam | Potassium channel KAT3 | 65 | 307 | - | - | |
| HCH12g0326 | 634 | Gene3D | Jelly Rolls | 348 | 510 | IPR014710 | - | |
| HCH12g0326 | 634 | ProSiteProfiles | KHA domain profile. | 565 | 634 | IPR021789 | - | |
| HCH12g0326 | 634 | CDD | CAP_ED | 383 | 496 | IPR000595 | - | |
| HCH12g0326 | 634 | FunFam | Potassium channel KAT2 | 371 | 507 | - | - | |
| HCH12g0326 | 634 | MobiDBLite | consensus disorder prediction | 527 | 558 | - | - | |
| HCH12g0326 | 634 | Pfam | Ion transport protein | 63 | 307 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH12g0326 | 634 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 383 | 502 | IPR000595 | - | |
| HCH12g0326 | 634 | PANTHER | POTASSIUM CHANNEL AKT1 | 24 | 527 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| HCH12g0326 | 634 | SUPERFAMILY | Voltage-gated potassium channels | 58 | 306 | - | - | |
| HCH12g0326 | 634 | SUPERFAMILY | cAMP-binding domain-like | 312 | 502 | IPR018490 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0326 | HCH-Chr12:1876562 | HCH3g0767 | HCH-Chr3:5582232 | 7.90E-134 | dispersed | |
| HCH12g0326 | HCH-Chr12:1876562 | HCH8g0800 | HCH-Chr8:44580236 | 6.30E-06 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g0326 | K21867 | - | csv:101215177 | 1082.4 |