Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0330 ATGAAAAAAAATCTTATCATCCTCGTCACAACCTTTCTCACATTTGTTTGCCTCATCAGAGCTAAAAAATTCTCTTTTGCAAACAATGCAGAACTTGCGGATTCACAGGCTGTGCACACCAAGCAGAGGAAGCTCTTGCACTACAAAGAGCAGTTTGAGCCTGTGAGTCATCCACCTCGACTGACCTTTAACAATCCGAGACTCGAGAGTGCTTATATTGCCCTACAAGCATGGAAGCAAGCCATTATCTCAGATCCGTTTAACTTAACCACCAATTGGGTAGGATGCAACGTGTGCAACTACACAGGTGTGTTTTGCGCCGAAGCTCTTGACGACCCCTCAATCCAAACTGTTGCAGGCATTGATCTAAACCATGGAGACATTGCAGGATATCTTCCTGAAGAGCTTGGCCTTCTATGCGATATTGCACTTTTCCACGTAAACTCAAATCGGTTTTGTGGCAAAGTACCAAACAGTTTTGAAAGACTAAAGCTACTCTTTGAGCTTGACATCAGTAACAACCGGTTTGCAGGAAAATTTCCTCGTGTTGTTCTCAATTTGCCTAGTCTCAAATATCTAGACCTTCGGTTCAATGAGTTTGAAGGGCAAGTACCTAGCCCTCTTTTTGACAAAGATCTTGATGCCATATTCATCAACCATAATCGATTTGCATTTGACCTTCCTGATAATTTTGGAAACTCACCGGTTTCTGTAATTGTTCTGTCCAACAATAATTTTCATGGATGTTTACCATCAAGTATAGGCAACATGTCAGAGACATTGAACGAAATAATTATGATAAACAATGAATTCCACTCTTGTTTGCCCAAAGAGGTGGGTTTGCTAAAAAATGTAGAAGTATTTGATGTGAGCTATAATAATCTCGTGGGTGAATTGCCTGAGTCAATTGGACACATGTCAAGCTTAAAACAGCTCAATATCGCACACAATAAGCTATCAGCAACAATACCCGAGAGCGTGTGCAAGCTTCCCAAGCTGCAGAATTTTAGTTTTCAGTACAACTTCTTCACTGGTGAGCCAACAACATGTCTAGATTTAGACAGCCTTGATGAAAGCAGGAACTGTTTGCAAGCCAAGCCAAACCAAAGATCAACTTTGCAATGTAAATTATATCTCTCCATGTCTGTTGATTGCGGTTCCTTCAAATGTAAAACGTTTGTTCCTTCTCCACCTCCACCATCTCCCTCTCCACCACCACCGTCACCATCTCCTCCACCACCACCACCTCCTCCACCTTCACCATCTCCTCCACCACCACCACCACCACCTCCTCCCTCCTACAATTTCCCACCTCCCCCACCGCCCATAATTTCTCCGCCTCCGCCTCCATCTCTACCCCCATGTATTGGATATCCCCCACCACCACCACCACCTGCTCCAGCTTATGATGGTCCCTTGCCACCAGTTGTTGGAATGCCATATACATCTCCCCCGCCACCTCAATTCTACTATTGA 1476 44.04 MKKNLIILVTTFLTFVCLIRAKKFSFANNAELADSQAVHTKQRKLLHYKEQFEPVSHPPRLTFNNPRLESAYIALQAWKQAIISDPFNLTTNWVGCNVCNYTGVFCAEALDDPSIQTVAGIDLNHGDIAGYLPEELGLLCDIALFHVNSNRFCGKVPNSFERLKLLFELDISNNRFAGKFPRVVLNLPSLKYLDLRFNEFEGQVPSPLFDKDLDAIFINHNRFAFDLPDNFGNSPVSVIVLSNNNFHGCLPSSIGNMSETLNEIIMINNEFHSCLPKEVGLLKNVEVFDVSYNNLVGELPESIGHMSSLKQLNIAHNKLSATIPESVCKLPKLQNFSFQYNFFTGEPTTCLDLDSLDESRNCLQAKPNQRSTLQCKLYLSMSVDCGSFKCKTFVPSPPPPSPSPPPPSPSPPPPPPPPPSPSPPPPPPPPPPSYNFPPPPPPIISPPPPPSLPPCIGYPPPPPPPAPAYDGPLPPVVGMPYTSPPPPQFYY 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1904102 1905577 + evm.model.ptg000002l.1329 HCH12g0330 555177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0330 491 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 12 489 IPR051582 -
HCH12g0330 491 PRINTS Proline rich extensin signature 395 407 - -
HCH12g0330 491 PRINTS Proline rich extensin signature 407 428 - -
HCH12g0330 491 PRINTS Proline rich extensin signature 435 451 - -
HCH12g0330 491 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515(InterPro)
HCH12g0330 491 Pfam Leucine Rich Repeat 284 306 IPR001611 GO:0005515(InterPro)
HCH12g0330 491 Pfam Leucine Rich Repeat 189 208 IPR001611 GO:0005515(InterPro)
HCH12g0330 491 Pfam Leucine Rich Repeat 238 257 IPR001611 GO:0005515(InterPro)
HCH12g0330 491 Gene3D Ribonuclease Inhibitor 235 389 IPR032675 -
HCH12g0330 491 Gene3D Ribonuclease Inhibitor 70 234 IPR032675 -
HCH12g0330 491 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 258 346 - -
HCH12g0330 491 FunFam Leucine-rich repeat extensin-like protein 1 72 233 - -
HCH12g0330 491 MobiDBLite consensus disorder prediction 396 480 - -
HCH12g0330 491 SUPERFAMILY L domain-like 70 357 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0457 HCH-Chr10:3725504 HCH12g0330 HCH-Chr12:1904102 3.90E-55 dispersed
HCH12g0330 HCH-Chr12:1904102 HCH13g1116 HCH-Chr13:36805619 1.20E-41 dispersed
HCH12g0665 HCH-Chr12:4054514 HCH12g0330 HCH-Chr12:1904102 4.60E-45 transposed
HCH7g0138 HCH-Chr7:929134 HCH12g0330 HCH-Chr12:1904102 2.40E-43 transposed
HCH7g1246 HCH-Chr7:45311020 HCH12g0330 HCH-Chr12:1904102 2.50E-37 transposed
HCH12g0330 HCH-Chr12:1904102 HCH8g0769 HCH-Chr8:44314220 1.30E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0330 - - - 0.0