Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0330 | ATGAAAAAAAATCTTATCATCCTCGTCACAACCTTTCTCACATTTGTTTGCCTCATCAGAGCTAAAAAATTCTCTTTTGCAAACAATGCAGAACTTGCGGATTCACAGGCTGTGCACACCAAGCAGAGGAAGCTCTTGCACTACAAAGAGCAGTTTGAGCCTGTGAGTCATCCACCTCGACTGACCTTTAACAATCCGAGACTCGAGAGTGCTTATATTGCCCTACAAGCATGGAAGCAAGCCATTATCTCAGATCCGTTTAACTTAACCACCAATTGGGTAGGATGCAACGTGTGCAACTACACAGGTGTGTTTTGCGCCGAAGCTCTTGACGACCCCTCAATCCAAACTGTTGCAGGCATTGATCTAAACCATGGAGACATTGCAGGATATCTTCCTGAAGAGCTTGGCCTTCTATGCGATATTGCACTTTTCCACGTAAACTCAAATCGGTTTTGTGGCAAAGTACCAAACAGTTTTGAAAGACTAAAGCTACTCTTTGAGCTTGACATCAGTAACAACCGGTTTGCAGGAAAATTTCCTCGTGTTGTTCTCAATTTGCCTAGTCTCAAATATCTAGACCTTCGGTTCAATGAGTTTGAAGGGCAAGTACCTAGCCCTCTTTTTGACAAAGATCTTGATGCCATATTCATCAACCATAATCGATTTGCATTTGACCTTCCTGATAATTTTGGAAACTCACCGGTTTCTGTAATTGTTCTGTCCAACAATAATTTTCATGGATGTTTACCATCAAGTATAGGCAACATGTCAGAGACATTGAACGAAATAATTATGATAAACAATGAATTCCACTCTTGTTTGCCCAAAGAGGTGGGTTTGCTAAAAAATGTAGAAGTATTTGATGTGAGCTATAATAATCTCGTGGGTGAATTGCCTGAGTCAATTGGACACATGTCAAGCTTAAAACAGCTCAATATCGCACACAATAAGCTATCAGCAACAATACCCGAGAGCGTGTGCAAGCTTCCCAAGCTGCAGAATTTTAGTTTTCAGTACAACTTCTTCACTGGTGAGCCAACAACATGTCTAGATTTAGACAGCCTTGATGAAAGCAGGAACTGTTTGCAAGCCAAGCCAAACCAAAGATCAACTTTGCAATGTAAATTATATCTCTCCATGTCTGTTGATTGCGGTTCCTTCAAATGTAAAACGTTTGTTCCTTCTCCACCTCCACCATCTCCCTCTCCACCACCACCGTCACCATCTCCTCCACCACCACCACCTCCTCCACCTTCACCATCTCCTCCACCACCACCACCACCACCTCCTCCCTCCTACAATTTCCCACCTCCCCCACCGCCCATAATTTCTCCGCCTCCGCCTCCATCTCTACCCCCATGTATTGGATATCCCCCACCACCACCACCACCTGCTCCAGCTTATGATGGTCCCTTGCCACCAGTTGTTGGAATGCCATATACATCTCCCCCGCCACCTCAATTCTACTATTGA | 1476 | 44.04 | MKKNLIILVTTFLTFVCLIRAKKFSFANNAELADSQAVHTKQRKLLHYKEQFEPVSHPPRLTFNNPRLESAYIALQAWKQAIISDPFNLTTNWVGCNVCNYTGVFCAEALDDPSIQTVAGIDLNHGDIAGYLPEELGLLCDIALFHVNSNRFCGKVPNSFERLKLLFELDISNNRFAGKFPRVVLNLPSLKYLDLRFNEFEGQVPSPLFDKDLDAIFINHNRFAFDLPDNFGNSPVSVIVLSNNNFHGCLPSSIGNMSETLNEIIMINNEFHSCLPKEVGLLKNVEVFDVSYNNLVGELPESIGHMSSLKQLNIAHNKLSATIPESVCKLPKLQNFSFQYNFFTGEPTTCLDLDSLDESRNCLQAKPNQRSTLQCKLYLSMSVDCGSFKCKTFVPSPPPPSPSPPPPSPSPPPPPPPPPSPSPPPPPPPPPPSYNFPPPPPPIISPPPPPSLPPCIGYPPPPPPPAPAYDGPLPPVVGMPYTSPPPPQFYY | 491 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 1904102 | 1905577 | + | evm.model.ptg000002l.1329 | HCH12g0330 | 555177 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0330 | 491 | PANTHER | LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED | 12 | 489 | IPR051582 | - | |
HCH12g0330 | 491 | PRINTS | Proline rich extensin signature | 395 | 407 | - | - | |
HCH12g0330 | 491 | PRINTS | Proline rich extensin signature | 407 | 428 | - | - | |
HCH12g0330 | 491 | PRINTS | Proline rich extensin signature | 435 | 451 | - | - | |
HCH12g0330 | 491 | Pfam | Leucine Rich Repeat | 308 | 330 | IPR001611 | GO:0005515(InterPro) | |
HCH12g0330 | 491 | Pfam | Leucine Rich Repeat | 284 | 306 | IPR001611 | GO:0005515(InterPro) | |
HCH12g0330 | 491 | Pfam | Leucine Rich Repeat | 189 | 208 | IPR001611 | GO:0005515(InterPro) | |
HCH12g0330 | 491 | Pfam | Leucine Rich Repeat | 238 | 257 | IPR001611 | GO:0005515(InterPro) | |
HCH12g0330 | 491 | Gene3D | Ribonuclease Inhibitor | 235 | 389 | IPR032675 | - | |
HCH12g0330 | 491 | Gene3D | Ribonuclease Inhibitor | 70 | 234 | IPR032675 | - | |
HCH12g0330 | 491 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 258 | 346 | - | - | |
HCH12g0330 | 491 | FunFam | Leucine-rich repeat extensin-like protein 1 | 72 | 233 | - | - | |
HCH12g0330 | 491 | MobiDBLite | consensus disorder prediction | 396 | 480 | - | - | |
HCH12g0330 | 491 | SUPERFAMILY | L domain-like | 70 | 357 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0457 | HCH-Chr10:3725504 | HCH12g0330 | HCH-Chr12:1904102 | 3.90E-55 | dispersed | |
HCH12g0330 | HCH-Chr12:1904102 | HCH13g1116 | HCH-Chr13:36805619 | 1.20E-41 | dispersed | |
HCH12g0665 | HCH-Chr12:4054514 | HCH12g0330 | HCH-Chr12:1904102 | 4.60E-45 | transposed | |
HCH7g0138 | HCH-Chr7:929134 | HCH12g0330 | HCH-Chr12:1904102 | 2.40E-43 | transposed | |
HCH7g1246 | HCH-Chr7:45311020 | HCH12g0330 | HCH-Chr12:1904102 | 2.50E-37 | transposed | |
HCH12g0330 | HCH-Chr12:1904102 | HCH8g0769 | HCH-Chr8:44314220 | 1.30E-51 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0330 | - | - | - | 0.0 |