Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0338 ATGAGTAGGGTGAGCATTGGTGTCCAAGTTGAAGAGCCAACAGGAAGAATTACGAGGGCACGGGCGAAAGAATTAAGTGAATCAGGAGGAATTTTATGCTCTTCAAAATCTTCTACAGGTCAGAAGCAGCTTCTACGAGCAAATTGTAAAAGAGTGGCACCAGATGAGATAAAGACTTATTCTATTGCTGATGGCATTCCGAACAAGAGAAGAGCAGTGCTCAAGGATGTGACTAATATCGCCTGCAGAGATTCTGATCAAAATTACATCAATGTTTCTAAAATTCAGTGTACTAAACCAGCTAGAAGAGTTTCAGCAAAGGCAAAGGCAAATGTGCCTTTCAATACTTCTCAAGAAATTATTAAAGCAGAAGAAGATGCAAACACAAAACTAGCTGAAGATTTATCTAGAATAAGGGTGGTGGAATCGCGAGAGAGTACTTCACAGGAGACATTGGAGGAAAAAGAAAGAATAATGCAAATTATGTCTAATACTAGCAGAGAATGTGGAATGTTAGATATGATGCTCTCTGTTTCTTCTGGAGAATATAGCCCTCAGCAAAAAGAAAAATATATGGTGCGTGAGAAATTGGGAGCATCAAGTGATAGGGGTGTCATAAACATTGATTCAGATTCAAAATGTCTTCAATCATGCAGCACCTATGCCCCAGATATATATGATAGGATACGTGTGACGGAGCTTGATCAAAGGCCCTCAAGTAACTATATGGAGCAGTTGCAGCAAGATATCACTGCAAACATGCGAGGGATACTCGTTGATTGGCTTGTAGAGGTTTCTGAAGAATATAAGCTGGTTCCAGATACGCTTTATCTTACCGTGAATGTTATCGATCGGTTTCTTTCTCAAAAGTATATGGAGAAAAAGCGACTACAGTTACTGGGTGTTACATGCATGCTGATTGCATCAAAATATGAAGAGATCTGTGCACCACGTGTGGAAGATTTCTGCTTCATTACAGATAATACATACACAAAAGGAGAGGTAGTAGAAATGGAGAGTGAAGTTTTAAACTTACTGCACTTCCGCCTATCTGTTCCCACTACAAAAACATTTCTAAGGAGATTCATACAATCAGCTCATGCTTCTTACAAGGTTCCTTGCATTGAACTTGAGTTTCTGGCCAATTATTTAGCCGAATTGACTCTCGTTGAACACAGCTTCCTAAAGTTCCTGCCTTCTCTGATAGCGGCATCGGCCGTGTTTCTTGCGAGATGGACGCTTGATCAATTAGATCATCCATGGAATCCAACTTTAGAGTACTATACCAGTTACAAAGCTTCTGAACTGAAATCTGCAGTGATTGCGCTAGAAAAATTGCAACATAACACCATTGGCTCCTCCCTAAATGCCGTACGTGAGAAGTATAAACAATCAAAGTTCAAATGTGTAGCAGAATTGACACCCTCAAGATCGGTTCTCTCTCTCTTCTAA 1452 40.01 MSRVSIGVQVEEPTGRITRARAKELSESGGILCSSKSSTGQKQLLRANCKRVAPDEIKTYSIADGIPNKRRAVLKDVTNIACRDSDQNYINVSKIQCTKPARRVSAKAKANVPFNTSQEIIKAEEDANTKLAEDLSRIRVVESRESTSQETLEEKERIMQIMSNTSRECGMLDMMLSVSSGEYSPQQKEKYMVREKLGASSDRGVINIDSDSKCLQSCSTYAPDIYDRIRVTELDQRPSSNYMEQLQQDITANMRGILVDWLVEVSEEYKLVPDTLYLTVNVIDRFLSQKYMEKKRLQLLGVTCMLIASKYEEICAPRVEDFCFITDNTYTKGEVVEMESEVLNLLHFRLSVPTTKTFLRRFIQSAHASYKVPCIELEFLANYLAELTLVEHSFLKFLPSLIAASAVFLARWTLDQLDHPWNPTLEYYTSYKASELKSAVIALEKLQHNTIGSSLNAVREKYKQSKFKCVAELTPSRSVLSLF 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1958231 1962453 - evm.model.ptg000002l.1321 HCH12g0338 555185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0338 483 SMART Cyclin_C_2 353 476 IPR004367 -
HCH12g0338 483 FunFam Cyclin A1 340 472 - -
HCH12g0338 483 ProSitePatterns Cyclins signature. 255 286 IPR048258 -
HCH12g0338 483 FunFam Mitotic cyclin 6 238 338 - -
HCH12g0338 483 SUPERFAMILY Cyclin-like 352 475 IPR036915 -
HCH12g0338 483 Gene3D - 238 351 - -
HCH12g0338 483 PIRSF Cyclin_A_B_D_E 33 482 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH12g0338 483 PANTHER CYCLINS 206 464 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH12g0338 483 SUPERFAMILY Cyclin-like 216 350 IPR036915 -
HCH12g0338 483 CDD CYCLIN_AtCycA-like_rpt2 353 467 - -
HCH12g0338 483 Gene3D - 224 472 - -
HCH12g0338 483 SMART cyclin_7 260 344 IPR013763 -
HCH12g0338 483 SMART cyclin_7 357 445 IPR013763 -
HCH12g0338 483 CDD CYCLIN_AtCycA_like_rpt1 216 349 - -
HCH12g0338 483 Pfam Cyclin, N-terminal domain 224 351 IPR006671 -
HCH12g0338 483 Pfam Cyclin, C-terminal domain 353 475 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0338 HCH-Chr12:1958231 HCH4g1352 HCH-Chr4:9549372 8.40E-112 dispersed
HCH12g0338 HCH-Chr12:1958231 HCH4g0400 HCH-Chr4:2601293 3.90E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0338 K06627 - csv:101204275 726.087