Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0344 ATGTTGGATTTGACGACGGCCGGAGTTGCAACCTCTTGGTCCCACGCGCTGGTCAGAATCTCGCCGTATACCTTCTCCTCCGTCGGCATTGCCGTCGCAATCGGCGTCTCCGTGCTCGGAGCCGCCTGGTATCGTCTCGTGGCTATATATGGTGTGATTGTCGCCATCATTCTACAAACAAAATTGGAGAATGTTGCAGCACCCCAAATCGATGCTCCTGAGTCTCTTAGAGCAGGATATGTAATTTTTGCTTCTGGAATTATCGTGGGATTCGCCAATCTCGTTTGCAGGGAGTATAATAGGGAGCAGCTAGCATTATCTGATGCCCAGAATTTTTCACTTTTTGTGAAGATTCTTATGATCGAGATCTTTGGTAGTGCACTTGGGTTATTTGGTGTAATTGTAGGAATAATTATGTCTGCTCAAGCTGCTTGGCCTTCAAAGGCAGTGTAA 453 47.02 MLDLTTAGVATSWSHALVRISPYTFSSVGIAVAIGVSVLGAAWYRLVAIYGVIVAIILQTKLENVAAPQIDAPESLRAGYVIFASGIIVGFANLVCREYNREQLALSDAQNFSLFVKILMIEIFGSALGLFGVIVGIIMSAQAAWPSKAV 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 1977071 1977989 + evm.model.ptg000002l.1315 HCH12g0344 555191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0344 150 PRINTS Vacuolar ATP synthase 16kDa subunit signature 118 141 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH12g0344 150 PRINTS Vacuolar ATP synthase 16kDa subunit signature 38 62 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
HCH12g0344 150 CDD ATP-synt_Vo_c_ATP6F_rpt2 78 139 - -
HCH12g0344 150 Gene3D - 44 145 IPR035921 -
HCH12g0344 150 SUPERFAMILY F1F0 ATP synthase subunit C 75 140 IPR035921 -
HCH12g0344 150 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 46 143 - GO:0016021(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0344 HCH-Chr12:1977071 HCH4g0410 HCH-Chr4:2684505 7.30E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0344 K03661 - rcu:8284846 196.438