Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g0347 | ATGTCGTCGTTGTCGTTGTCGTTGTCGCAGAAGAACAAGAAGAAGAAGTCGTTTAAAAGATCATTATGTGGAGAGCCACCGGAGATGGAGATCGAACAATTATCGAGAGACGACGGCAGCCAATATAGCCTGACCGGCGAAATCCTTCCTCCTCTCGGTGTTAATGGTCGTAATAATCGCCGGATAAAACTCCGTCCTCTCATTATCTCACCATTCGCTTACAATTACAGAGTTTGGGAGACGTTTCTTATATTTCTAGTGCTATACACAGCATGGATTTGTCCATTTGAGTTTGGGTTTCTGGATAGGCCGAAGGGACCCATTGCGATCCTTGACAACGTTGTCAATGGAATTTTTGCCATTGATATCATTTTAACTTTCTTCGTCGCGTATTTGGACAAAACTTCTTATCTGCTCGTCGATAATCATAAGCTGATTGCTCTACGATATGCTAAAACCTGGCTCGTTTTCGACGTCATTTCCATTATTCCATCGGAATTGGCTCGGAGTATCCTTCCACCTCCCCTTCAAACTTATGGATACTTTAATATGCTTCGTCTATGGCGGCTCCGCCGAGTCAGTTCCATGTTCGCCAGGTTGGAAAAGGATAGGAACTTCAACTATTTCTGGGTTAGATGTGCAAAGCTCACATTTGTATGTCTATTTACAGTTCATTTTGTTGCCTGCTGCTTCTATCTAATTGCTGCAAACTATCCTGACCCACAAAAGACATGGATGTCCTTAGCCATGGAAGATTTTCAGCAACGGAGTTTGTGGGTTCGTTATGTAGCTTCCATGTATTGGTCCCTTGTCACACTGACAACCACTGGCTATGGAGATTTGCATCCTGTAAATGAGCAAGAGATGCTATTTGTCTGCTTTTACTTGTGTTTTGTTCTTGGACTGCAGGCTTATCTTATTGGAAACATGACTAACTTGGTCGTCCATTGTACTAGTCGAACCCGGAAATTCAGGGACACAATACAAGCTGCCACAAATTTTGCGCAAAGAAATCAGCTTCCTATTCGGTTGCAAGAACAGATGGTTGCTCATCTGTGTTTGAGATTCCGAACCGATTCGGAGGGATTACAACAGCAGGAGACACTTGACATCCTTCCAAAAGCCATTAGATCTAGCATCTCACACCATCTCTTCTATTCACTTGTTGATGGTGTTTATTTGTTTCATGGGGTGTCAACTGACTTACTTTTTCAACTGGTAACAGAGATGAAGGCCGAGTACTTCCCTCCCAAAGAAGACATTATTTTGGAGAATGAAGCGCCGACAGACTTCTATATATTCGTCACCGGTTCTGCAGACCTCATTATAACAAGGAATGGAATAGAACAGGTAGTTGGTGAAGCAAAGACGGGCGATGTCATTGGTGAGATTGGTGTGCTTTGTTATAGACCACAATCATTTACAGTCCGAACCAGCCGATTGTGCCAATTGCTACGTTTGAATCGGACTTCGTTTTTGAATATCGTACAAGCAAATGTTGGAGATGGAACAATAATATTGAACAATCTCCTTCAGCATCTGAAGAACATGAAGGACCCTATGATGGAGGAAATTCTGCAAGATACAGAACAGACATTGACTCGGGGTGGGACGGAATTGCCGCTTAGTTTATGCTTTGCCGCAAACCGTGGCGATGATATGTTGTTGCATCAATTGTTAAGACGGGCCTCACATCCAAATGAAGTAGATAGCAGCAGCGGAAAGACAGCACTTCATATTGCAGCATCTAAAGGACATGAGCACTGTATAGTTCTACTCCTAGAATATGGGGCAGATGCTAACTTCAAAGATTTCGAAGGGAACGTTCCCCTGTGGGAAGCAATACAAGGGAAGCATGAATCTGTAGTAAAGCTTCTTATGGACAATGGTGCAGAGATTTCATCAGGTGATGTAGGCAATTATGCATGCACGGCTGCAGAGCAAAACAGCATGGAAATGCTAAAAAACATAGTCCAATGTGGTGGGGATGTAACACAGCCCAAAAGCAATGGAACTACAGCCCTTCACGTGGCAGTATGTGAAGGAAACACTGAGATGGTCAAGTTCCTATTCGACGAATGCGGTGCCGATGTCGATAAGCCCGACTTTCATGGGTGGACTCCTCGAGCATTGGCAGATCATCAAGGCCATGAAGAGATAAAAGAACTCTTCTTGGCTAAGCAGGAACCACTGAGGAAACCGCCTCTTGCACCAATTTCTCAGAATTCAGATCCAGTTTATCTTGGGAAGTTCCAGAGTGAGTTAAACATGCCTGGATTTTCTCAAGAATGCACCACTCCGATTAGAAAGTCAAGTTGTTCAGATATTCCAAGAAGGAGAAGACCCAATAATTTTCGAAACTCGCTTGTGGGGTTCATGGAAGCTGCCAATACTGTCAATACTGGTGAAAGAGACCATCTAGCATCTGCGGCGAGTTTTCGGAGTAGCCGGAGTGTCGGAGCAGGTTACCTGACAAGAATTACTATAAGTTGTCCTGATAAGGGAGAAATTGGCGGAAAGCTTGTGCTCTTACCAGAATCCATCAAGGAATTACTTGACATTGCTGCCAAAAAATTTGGACCTTTTCCCACTAAAATTTTGACCCAACAAGGAGCTGAGGTTGAAGATATAGACCTTATCAGAGACGGTGATCATCTAATTGTTAGTTATCCTGATGCCGTTTCCACTAGCCATTAA | 2697 | 43.53 | MSSLSLSLSQKNKKKKSFKRSLCGEPPEMEIEQLSRDDGSQYSLTGEILPPLGVNGRNNRRIKLRPLIISPFAYNYRVWETFLIFLVLYTAWICPFEFGFLDRPKGPIAILDNVVNGIFAIDIILTFFVAYLDKTSYLLVDNHKLIALRYAKTWLVFDVISIIPSELARSILPPPLQTYGYFNMLRLWRLRRVSSMFARLEKDRNFNYFWVRCAKLTFVCLFTVHFVACCFYLIAANYPDPQKTWMSLAMEDFQQRSLWVRYVASMYWSLVTLTTTGYGDLHPVNEQEMLFVCFYLCFVLGLQAYLIGNMTNLVVHCTSRTRKFRDTIQAATNFAQRNQLPIRLQEQMVAHLCLRFRTDSEGLQQQETLDILPKAIRSSISHHLFYSLVDGVYLFHGVSTDLLFQLVTEMKAEYFPPKEDIILENEAPTDFYIFVTGSADLIITRNGIEQVVGEAKTGDVIGEIGVLCYRPQSFTVRTSRLCQLLRLNRTSFLNIVQANVGDGTIILNNLLQHLKNMKDPMMEEILQDTEQTLTRGGTELPLSLCFAANRGDDMLLHQLLRRASHPNEVDSSSGKTALHIAASKGHEHCIVLLLEYGADANFKDFEGNVPLWEAIQGKHESVVKLLMDNGAEISSGDVGNYACTAAEQNSMEMLKNIVQCGGDVTQPKSNGTTALHVAVCEGNTEMVKFLFDECGADVDKPDFHGWTPRALADHQGHEEIKELFLAKQEPLRKPPLAPISQNSDPVYLGKFQSELNMPGFSQECTTPIRKSSCSDIPRRRRPNNFRNSLVGFMEAANTVNTGERDHLASAASFRSSRSVGAGYLTRITISCPDKGEIGGKLVLLPESIKELLDIAAKKFGPFPTKILTQQGAEVEDIDLIRDGDHLIVSYPDAVSTSH | 898 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 1988391 | 1993108 | - | evm.model.ptg000002l.1312 | HCH12g0347 | 555194 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g0347 | 898 | Pfam | Ankyrin repeats (3 copies) | 544 | 635 | IPR002110 | GO:0005515(InterPro) | |
| HCH12g0347 | 898 | Pfam | Ankyrin repeats (3 copies) | 644 | 727 | IPR002110 | GO:0005515(InterPro) | |
| HCH12g0347 | 898 | Gene3D | - | 77 | 316 | - | - | |
| HCH12g0347 | 898 | ProSiteProfiles | Ankyrin repeat profile. | 573 | 605 | IPR002110 | GO:0005515(InterPro) | |
| HCH12g0347 | 898 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 394 | 496 | IPR000595 | - | |
| HCH12g0347 | 898 | PRINTS | EAG/ELK/ERG potassium channel family signature | 306 | 315 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH12g0347 | 898 | PRINTS | EAG/ELK/ERG potassium channel family signature | 112 | 122 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH12g0347 | 898 | PRINTS | EAG/ELK/ERG potassium channel family signature | 262 | 279 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH12g0347 | 898 | PRINTS | EAG/ELK/ERG potassium channel family signature | 89 | 96 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH12g0347 | 898 | PRINTS | EAG/ELK/ERG potassium channel family signature | 123 | 132 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
| HCH12g0347 | 898 | Gene3D | - | 540 | 725 | IPR036770 | - | |
| HCH12g0347 | 898 | ProSiteProfiles | Ankyrin repeat region circular profile. | 670 | 692 | - | - | |
| HCH12g0347 | 898 | SMART | ANK_2a | 637 | 666 | IPR002110 | GO:0005515(InterPro) | |
| HCH12g0347 | 898 | SMART | ANK_2a | 573 | 602 | IPR002110 | GO:0005515(InterPro) | |
| HCH12g0347 | 898 | SMART | ANK_2a | 606 | 635 | IPR002110 | GO:0005515(InterPro) | |
| HCH12g0347 | 898 | SMART | ANK_2a | 670 | 700 | IPR002110 | GO:0005515(InterPro) | |
| HCH12g0347 | 898 | Pfam | Cyclic nucleotide-binding domain | 413 | 499 | IPR000595 | - | |
| HCH12g0347 | 898 | ProSiteProfiles | Ankyrin repeat region circular profile. | 573 | 604 | - | - | |
| HCH12g0347 | 898 | SUPERFAMILY | Voltage-gated potassium channels | 75 | 315 | - | - | |
| HCH12g0347 | 898 | ProSiteProfiles | Ankyrin repeat profile. | 670 | 703 | IPR002110 | GO:0005515(InterPro) | |
| HCH12g0347 | 898 | PANTHER | POTASSIUM CHANNEL AKT1 | 29 | 887 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
| HCH12g0347 | 898 | FunFam | Potassium channel KAT3 | 78 | 316 | - | - | |
| HCH12g0347 | 898 | ProSiteProfiles | Ankyrin repeat region circular profile. | 606 | 637 | - | - | |
| HCH12g0347 | 898 | Gene3D | Jelly Rolls | 359 | 521 | IPR014710 | - | |
| HCH12g0347 | 898 | SUPERFAMILY | Ankyrin repeat | 544 | 726 | IPR036770 | - | |
| HCH12g0347 | 898 | FunFam | Potassium channel KAT2 | 382 | 518 | - | - | |
| HCH12g0347 | 898 | SMART | cnmp_10 | 394 | 511 | IPR000595 | - | |
| HCH12g0347 | 898 | ProSiteProfiles | Ankyrin repeat profile. | 606 | 638 | IPR002110 | GO:0005515(InterPro) | |
| HCH12g0347 | 898 | SUPERFAMILY | cAMP-binding domain-like | 319 | 514 | IPR018490 | - | |
| HCH12g0347 | 898 | ProSiteProfiles | KHA domain profile. | 826 | 898 | IPR021789 | - | |
| HCH12g0347 | 898 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| HCH12g0347 | 898 | Pfam | Ion transport protein | 76 | 321 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH12g0347 | 898 | CDD | CAP_ED | 394 | 499 | IPR000595 | - | |
| HCH12g0347 | 898 | Pfam | KHA, dimerisation domain of potassium ion channel | 826 | 888 | IPR021789 | - | |
| HCH12g0347 | 898 | PRINTS | Ankyrin repeat signature | 574 | 589 | IPR002110 | GO:0005515(InterPro) | |
| HCH12g0347 | 898 | PRINTS | Ankyrin repeat signature | 622 | 636 | IPR002110 | GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g1013 | HCH-Chr10:29122019 | HCH12g0347 | HCH-Chr12:1988391 | 1.90E-87 | dispersed | |
| HCH12g0347 | HCH-Chr12:1988391 | HCH3g0767 | HCH-Chr3:5582232 | 3.80E-09 | dispersed | |
| HCH12g0347 | HCH-Chr12:1988391 | HCH8g0800 | HCH-Chr8:44580236 | 8.70E-288 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g0347 | K21867 | - | csv:101217334 | 1256.12 |