Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0354 ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAAAGGAATGAACTTGTTCGGATTCGTCACGATTCCGACAGTGGGACAAAACCTCTGAAGAATATAAACAGCCAAACATGTCAAATATGCGGTGACACGGTTGGTCTGACAGCTTCAGGTGACATCTTTGTTGCTTGCAATGAATGCGCCTTTCCAGTTTGTCGTCCGTGTTATGAGTATGAGAGGAAAGATGGGAACCAGTCTTGCCCTCAGTGCAAGACTAGATATAGGAGGCACAAAGGGAGTCCTCGAGTTGATGGAGATGATGAAGAGGATGACATAGATGATATCGAGAATGAGTTTAATTACGTCCAAGGAAGTAGCAAGGCTAAACGACAGTGGCACGGGGAAGATGCTGATCTGGCTTCTTCTGCTAGACATGAGTCTCAACAGCCTATACCACTCCTTACCAATGGGCAACCGGTATCGGGTGAAATTCCCTGTGCTACCCCCGACAACCAATCAGTGCGAACTACATCCGGGCCTTTGGGACCTTCGGAAAAGCATATGCATTCACATCCTTATGTTGATCCACGACAACCAGTCCCGGTGAGAATTGTGGACCCATCAAAGGATTTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGGGTTGAAGGTTGGAAACTGAAACAAGAGAAAAACATGATGCAGTTGACGAGCAGGTACAACGAAGGGAAGGGCGACATAGAAGGCACTGGCTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTATGAGTCGTGTGGTTCCTATTCCGTCTTCTCACTTGACCCCTTATCGTGTTGTGATCATACTTCGGCTTATTATTCTGGCCTTCTTCTTACAGTACCGTGTGACACACCCGGTGAAGGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAAATTTGGTTTGCCTTATCCTGGCTTCTGGACCAGTTTCCAAAATGGTCTCCCATCAATCGCGAGACCTATCTAGAGAGACTTGCATTAAGATATGATCGTGAAGGAGAACCGTCACAGTTAGCTCCTGTTGATGTTTTTGTTAGTACAGTGGATCCACTCAAAGAGCCTCCTCTTATAACAGCAAACACTGTGCTTTCTATTCTTTCTGTGGACTACCCTGTAGACAAGGTTTCCTGCTATGTATCAGATGATGGTTCGGCAATGCTTACTTTCGAAGCACTCTCGGAAACTGCAGAATTTGCAAGGAAGTGGGTGCCTTTTTGCAAGAAGCACAACATTGAGCCAAGAGCCCCTGAATTTTATTTCGTTCAAAAGATAGACTACTTAAAGGACAAGATTCAACCTTCTTTTGTAAAAGAGCGTCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGGTTCGAATTAACGCGCTTGTTGCCAAGGCACAAAAGATGCCTGAGGAAGGTTGGACCATGCAGGATGGAACACCGTGGCCAGGAAATAATCCCAGGGATCATCCTGGAATGATTCAGGTTTTCTTGGGTCACAGTGGAGGCCTTGATACTGATGGGAACGAGCTACCACGACTCGTATATGTTTCTCGTGAGAAGCGACCAGGCTTCCAGCATCACAAGAAAGCTGGAGCAATGAATGCATTGATTCGAGTTTCAGCCGTCCTTACTAACGGAGCATATCTTTTAAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAAGAAGCGATGTGTTTCATGATGGATCCTGCTTATGGAAAGAAAACGTGTTATGTACAGTTCCCACAACGTTTTGATGGCATTGACTTGCACGATCGATATGCCAATCGAAATATTGTGTTTTTTGATATAAACTTGAAGGGGTTGGATGGTCTCCAAGGTCCTGTCTATGTGGGAACTGGTTGTTGTTTCAATAGGCAAGCTTTATATGGATACGATCCAGTTCTGACTGAGGCGGATTTGGAACCAAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAAGAACAAGAAGTATATCGACAAAAAGAGGGCCGCTAAAAGAACAGAATCTACCATTCCAATCTTTAACATGGAAGATATTGAGGAAGGTGTTGAAGGATACGATGATGAGAGGTCACTCTTGATGTCTCAGAAGAGTTTAGAAAAGCGTTTCGGCCAATCTCCAGTTTTTATCGCAGCCACTTTCATGGAGCAGGGAGGTATTCCACCTACAACTAATCCTGCAACTCTTCTAAAGGAAGCAATCCATGTTATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATCTTAACTGGTTTTAAGATGCATGCTCGTGGTTGGATATCAATTTATTGCATGCCTCCACGCCCAGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGATTGAACCAGGTGCTTCGATGGGCTTTGGGTTCAATTGAAATCTTGCTGAGCAGGCATTGTCCCATATGGTATGGCTACAATGGAAAACTAAAGCTTTTGGAGAGGCTAGCATACATCAATACTATTGTGTACCCAATCACTTCTATTCCACTGCTTGCATACTGTATGCTTCCGGCGTTTTGTCTTCTAACTGGAAAATTCATTATTCCTGAGATAAGCAACTTTGCAAGTATGTGGTTCATCCTCCTTTTCGTCTCCATCTTCGCAACCGGTATTCTTGAACTTAGATGGAGTGGGGTTAGCATTGAAGACTGGTGGAGGAATGAACAGTTTTGGGTCATTGGTGGTACTTCAGCACATCTGTTTGCTGTCTTCCAAGGGCTCCTAAAGGTTCTTGCTGGGATTGACACTAACTTCACTGTCACATCAAAGGCAAATGACGAAGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCCCCAACTACCGTCCTTATTATGAATATGGTCGGTATAGTGGCGGGTGTTTCATATGCGATAAATAGCGGTTACCAGTCTTGGGGTCCACTCTTTGGTAAGCTATTTTTTGCTCTGTGGGTGGTTGTCCATTTATATCCATTCCTAAAGGGTTTATTAGGAAGGCAAAATCGTACACCTACCATTGTCATTGTCTGGTCTATCCTCCTGGCTTCCATATTTTCGTTGCTCTGGGTGCGGATCGATCCATTCACCTCAGCATCTGTAAAGGCTGCCAACGGTCAATGTGGTATCAATTGCTAG 3249 44.17 MEANAGLVAGSYKRNELVRIRHDSDSGTKPLKNINSQTCQICGDTVGLTASGDIFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYRRHKGSPRVDGDDEEDDIDDIENEFNYVQGSSKAKRQWHGEDADLASSARHESQQPIPLLTNGQPVSGEIPCATPDNQSVRTTSGPLGPSEKHMHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQLTSRYNEGKGDIEGTGSNGEELQMADDARQPMSRVVPIPSSHLTPYRVVIILRLIILAFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWSPINRETYLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILSVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFVQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGKNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGKLKLLERLAYINTIVYPITSIPLLAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVVVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASVKAANGQCGINC 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2028533 2034620 + evm.model.ptg000002l.1305 HCH12g0354 555201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0354 1082 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 650 IPR029044 -
HCH12g0354 1082 FunFam Cellulose synthase 475 649 - -
HCH12g0354 1082 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 278 1051 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
HCH12g0354 1082 MobiDBLite consensus disorder prediction 159 194 - -
HCH12g0354 1082 CDD mRING-HC-C4C4_CesA 37 87 - -
HCH12g0354 1082 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
HCH12g0354 1082 SUPERFAMILY RING/U-box 22 111 - -
HCH12g0354 1082 Coils Coil 456 476 - -
HCH12g0354 1082 FunFam Cellulose synthase 21 112 - -
HCH12g0354 1082 MobiDBLite consensus disorder prediction 118 142 - -
HCH12g0354 1082 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 516 653 IPR029044 -
HCH12g0354 1082 Pfam Cellulose synthase 358 1071 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
HCH12g0354 1082 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
HCH12g0354 1082 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
HCH12g0354 1082 MobiDBLite consensus disorder prediction 159 174 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0354 HCH-Chr12:2028533 HCH9g1098 HCH-Chr9:13073945 0.00E+00 dispersed
HCH12g0354 HCH-Chr12:2028533 HCH2g0720 HCH-Chr2:50892902 1.10E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0354 K10999 - csv:101205724 2155.95