Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0354 | ATGGAAGCAAATGCGGGATTGGTGGCTGGATCTTACAAAAGGAATGAACTTGTTCGGATTCGTCACGATTCCGACAGTGGGACAAAACCTCTGAAGAATATAAACAGCCAAACATGTCAAATATGCGGTGACACGGTTGGTCTGACAGCTTCAGGTGACATCTTTGTTGCTTGCAATGAATGCGCCTTTCCAGTTTGTCGTCCGTGTTATGAGTATGAGAGGAAAGATGGGAACCAGTCTTGCCCTCAGTGCAAGACTAGATATAGGAGGCACAAAGGGAGTCCTCGAGTTGATGGAGATGATGAAGAGGATGACATAGATGATATCGAGAATGAGTTTAATTACGTCCAAGGAAGTAGCAAGGCTAAACGACAGTGGCACGGGGAAGATGCTGATCTGGCTTCTTCTGCTAGACATGAGTCTCAACAGCCTATACCACTCCTTACCAATGGGCAACCGGTATCGGGTGAAATTCCCTGTGCTACCCCCGACAACCAATCAGTGCGAACTACATCCGGGCCTTTGGGACCTTCGGAAAAGCATATGCATTCACATCCTTATGTTGATCCACGACAACCAGTCCCGGTGAGAATTGTGGACCCATCAAAGGATTTGAATTCTTATGGCCTTGGGAATGTTGACTGGAAGGAAAGGGTTGAAGGTTGGAAACTGAAACAAGAGAAAAACATGATGCAGTTGACGAGCAGGTACAACGAAGGGAAGGGCGACATAGAAGGCACTGGCTCAAATGGAGAAGAACTTCAAATGGCTGATGATGCTAGACAACCTATGAGTCGTGTGGTTCCTATTCCGTCTTCTCACTTGACCCCTTATCGTGTTGTGATCATACTTCGGCTTATTATTCTGGCCTTCTTCTTACAGTACCGTGTGACACACCCGGTGAAGGATGCATACCCCTTGTGGTTAACATCAGTTATTTGTGAAATTTGGTTTGCCTTATCCTGGCTTCTGGACCAGTTTCCAAAATGGTCTCCCATCAATCGCGAGACCTATCTAGAGAGACTTGCATTAAGATATGATCGTGAAGGAGAACCGTCACAGTTAGCTCCTGTTGATGTTTTTGTTAGTACAGTGGATCCACTCAAAGAGCCTCCTCTTATAACAGCAAACACTGTGCTTTCTATTCTTTCTGTGGACTACCCTGTAGACAAGGTTTCCTGCTATGTATCAGATGATGGTTCGGCAATGCTTACTTTCGAAGCACTCTCGGAAACTGCAGAATTTGCAAGGAAGTGGGTGCCTTTTTGCAAGAAGCACAACATTGAGCCAAGAGCCCCTGAATTTTATTTCGTTCAAAAGATAGACTACTTAAAGGACAAGATTCAACCTTCTTTTGTAAAAGAGCGTCGAGCAATGAAGAGAGAGTATGAAGAATTCAAGGTTCGAATTAACGCGCTTGTTGCCAAGGCACAAAAGATGCCTGAGGAAGGTTGGACCATGCAGGATGGAACACCGTGGCCAGGAAATAATCCCAGGGATCATCCTGGAATGATTCAGGTTTTCTTGGGTCACAGTGGAGGCCTTGATACTGATGGGAACGAGCTACCACGACTCGTATATGTTTCTCGTGAGAAGCGACCAGGCTTCCAGCATCACAAGAAAGCTGGAGCAATGAATGCATTGATTCGAGTTTCAGCCGTCCTTACTAACGGAGCATATCTTTTAAATGTCGATTGTGATCACTACTTCAACAACAGCAAAGCTCTCAAAGAAGCGATGTGTTTCATGATGGATCCTGCTTATGGAAAGAAAACGTGTTATGTACAGTTCCCACAACGTTTTGATGGCATTGACTTGCACGATCGATATGCCAATCGAAATATTGTGTTTTTTGATATAAACTTGAAGGGGTTGGATGGTCTCCAAGGTCCTGTCTATGTGGGAACTGGTTGTTGTTTCAATAGGCAAGCTTTATATGGATACGATCCAGTTCTGACTGAGGCGGATTTGGAACCAAATATTATCATTAAGAGTTGTTGTGGTTCAAGAAAGAAGGGCAAGAACAAGAAGTATATCGACAAAAAGAGGGCCGCTAAAAGAACAGAATCTACCATTCCAATCTTTAACATGGAAGATATTGAGGAAGGTGTTGAAGGATACGATGATGAGAGGTCACTCTTGATGTCTCAGAAGAGTTTAGAAAAGCGTTTCGGCCAATCTCCAGTTTTTATCGCAGCCACTTTCATGGAGCAGGGAGGTATTCCACCTACAACTAATCCTGCAACTCTTCTAAAGGAAGCAATCCATGTTATCAGTTGTGGATATGAAGATAAGACAGAATGGGGCAAAGAGATTGGGTGGATCTATGGTTCTGTGACAGAAGATATCTTAACTGGTTTTAAGATGCATGCTCGTGGTTGGATATCAATTTATTGCATGCCTCCACGCCCAGCATTCAAGGGATCTGCTCCCATCAATCTTTCTGATCGATTGAACCAGGTGCTTCGATGGGCTTTGGGTTCAATTGAAATCTTGCTGAGCAGGCATTGTCCCATATGGTATGGCTACAATGGAAAACTAAAGCTTTTGGAGAGGCTAGCATACATCAATACTATTGTGTACCCAATCACTTCTATTCCACTGCTTGCATACTGTATGCTTCCGGCGTTTTGTCTTCTAACTGGAAAATTCATTATTCCTGAGATAAGCAACTTTGCAAGTATGTGGTTCATCCTCCTTTTCGTCTCCATCTTCGCAACCGGTATTCTTGAACTTAGATGGAGTGGGGTTAGCATTGAAGACTGGTGGAGGAATGAACAGTTTTGGGTCATTGGTGGTACTTCAGCACATCTGTTTGCTGTCTTCCAAGGGCTCCTAAAGGTTCTTGCTGGGATTGACACTAACTTCACTGTCACATCAAAGGCAAATGACGAAGATGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACTTCTCTCCTCATCCCCCCAACTACCGTCCTTATTATGAATATGGTCGGTATAGTGGCGGGTGTTTCATATGCGATAAATAGCGGTTACCAGTCTTGGGGTCCACTCTTTGGTAAGCTATTTTTTGCTCTGTGGGTGGTTGTCCATTTATATCCATTCCTAAAGGGTTTATTAGGAAGGCAAAATCGTACACCTACCATTGTCATTGTCTGGTCTATCCTCCTGGCTTCCATATTTTCGTTGCTCTGGGTGCGGATCGATCCATTCACCTCAGCATCTGTAAAGGCTGCCAACGGTCAATGTGGTATCAATTGCTAG | 3249 | 44.17 | MEANAGLVAGSYKRNELVRIRHDSDSGTKPLKNINSQTCQICGDTVGLTASGDIFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYRRHKGSPRVDGDDEEDDIDDIENEFNYVQGSSKAKRQWHGEDADLASSARHESQQPIPLLTNGQPVSGEIPCATPDNQSVRTTSGPLGPSEKHMHSHPYVDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQEKNMMQLTSRYNEGKGDIEGTGSNGEELQMADDARQPMSRVVPIPSSHLTPYRVVIILRLIILAFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWSPINRETYLERLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILSVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFVQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGLQGPVYVGTGCCFNRQALYGYDPVLTEADLEPNIIIKSCCGSRKKGKNKKYIDKKRAAKRTESTIPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPTTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGKLKLLERLAYINTIVYPITSIPLLAYCMLPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKANDEDGDFAELYVFKWTSLLIPPTTVLIMNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVVVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSASVKAANGQCGINC | 1082 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2028533 | 2034620 | + | evm.model.ptg000002l.1305 | HCH12g0354 | 555201 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0354 | 1082 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 376 | 650 | IPR029044 | - | |
HCH12g0354 | 1082 | FunFam | Cellulose synthase | 475 | 649 | - | - | |
HCH12g0354 | 1082 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 278 | 1051 | - | GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER) | |
HCH12g0354 | 1082 | MobiDBLite | consensus disorder prediction | 159 | 194 | - | - | |
HCH12g0354 | 1082 | CDD | mRING-HC-C4C4_CesA | 37 | 87 | - | - | |
HCH12g0354 | 1082 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 112 | IPR013083 | - | |
HCH12g0354 | 1082 | SUPERFAMILY | RING/U-box | 22 | 111 | - | - | |
HCH12g0354 | 1082 | Coils | Coil | 456 | 476 | - | - | |
HCH12g0354 | 1082 | FunFam | Cellulose synthase | 21 | 112 | - | - | |
HCH12g0354 | 1082 | MobiDBLite | consensus disorder prediction | 118 | 142 | - | - | |
HCH12g0354 | 1082 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 516 | 653 | IPR029044 | - | |
HCH12g0354 | 1082 | Pfam | Cellulose synthase | 358 | 1071 | IPR005150 | GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro) | |
HCH12g0354 | 1082 | ProSiteProfiles | Zinc finger RING-type profile. | 39 | 85 | IPR001841 | - | |
HCH12g0354 | 1082 | Pfam | Zinc-binding RING-finger | 29 | 105 | IPR027934 | - | |
HCH12g0354 | 1082 | MobiDBLite | consensus disorder prediction | 159 | 174 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0354 | HCH-Chr12:2028533 | HCH9g1098 | HCH-Chr9:13073945 | 0.00E+00 | dispersed | |
HCH12g0354 | HCH-Chr12:2028533 | HCH2g0720 | HCH-Chr2:50892902 | 1.10E-111 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0354 | K10999 | - | csv:101205724 | 2155.95 |