Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0362 ATGGTGTATTCAAGGAAGTTTAGAGGAGTCAGGCAGAGGCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCATTACTGAAGAGAAGGGTGTGGCTAGGGACATTTGATACGGCTGAGGATGCAGCTAGAGCTTATGATCAAGCGGCTATCTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCACCAAAAGAATCATCTGATCAAGACCCCAAGCATGACAATGGATCACCATTATCTCCCAAGGCACTTTCTGAGCTCCTCAGCATGAAGCTCAGGAAATGCTGCAAGAACCCATCTCCTTCCTTGACATGTCTGCGGCTCGACAGCGACAACTCCCACATCGGCGTGTGGCAGAAGCGGGCCGGAACACGAGCAGCATCAAACTGGGTCATGAGGATAGAGCTTGGGAAGAAGGACACACAAGGTTTGGAGGATTCCTCGTCGCTATCGCAGCTCGGATCAGTACGAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAAGTCGGAATGGAATCGACGAAGAGGATAGAATTGCTATGCAAATGATCGAGGAATTGCTCAATTGGAACTGCCCTCTTCCTTCAACTTCAAGTTAA 606 49.83 MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPAPKESSDQDPKHDNGSPLSPKALSELLSMKLRKCCKNPSPSLTCLRLDSDNSHIGVWQKRAGTRAASNWVMRIELGKKDTQGLEDSSSLSQLGSVREEEEEEEEEEESRNGIDEEDRIAMQMIEELLNWNCPLPSTSS 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2069438 2070452 - evm.model.ptg000002l.1297 HCH12g0362 555209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0362 201 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0362 201 Pfam AP2 domain 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0362 201 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0362 201 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0362 201 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0362 201 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0362 201 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 149 IPR050913 -
HCH12g0362 201 FunFam Ethylene-responsive transcription factor 2 5 64 - -
HCH12g0362 201 Coils Coil 152 178 - -
HCH12g0362 201 MobiDBLite consensus disorder prediction 142 180 - -
HCH12g0362 201 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
HCH12g0362 201 MobiDBLite consensus disorder prediction 159 174 - -
HCH12g0362 201 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0362 201 MobiDBLite consensus disorder prediction 58 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0362 HCH-Chr12:2069438 HCH12g0399 HCH-Chr12:2281322 5.60E-25 dispersed
HCH10g0411 HCH-Chr10:3283636 HCH12g0362 HCH-Chr12:2069438 5.40E-59 wgd
HCH12g0362 HCH-Chr12:2069438 HCH6g0220 HCH-Chr6:2884158 4.10E-52 wgd
HCH12g0362 HCH-Chr12:2069438 HCH8g0837 HCH-Chr8:44874741 6.70E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32659 PF00847 AP2 4.20E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0362 - - - 0.0