Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0362 | ATGGTGTATTCAAGGAAGTTTAGAGGAGTCAGGCAGAGGCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCATTACTGAAGAGAAGGGTGTGGCTAGGGACATTTGATACGGCTGAGGATGCAGCTAGAGCTTATGATCAAGCGGCTATCTTGATGAATGGCCAAAACGCCAAGACCAATTTCCCTGCACCAAAAGAATCATCTGATCAAGACCCCAAGCATGACAATGGATCACCATTATCTCCCAAGGCACTTTCTGAGCTCCTCAGCATGAAGCTCAGGAAATGCTGCAAGAACCCATCTCCTTCCTTGACATGTCTGCGGCTCGACAGCGACAACTCCCACATCGGCGTGTGGCAGAAGCGGGCCGGAACACGAGCAGCATCAAACTGGGTCATGAGGATAGAGCTTGGGAAGAAGGACACACAAGGTTTGGAGGATTCCTCGTCGCTATCGCAGCTCGGATCAGTACGAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAAGTCGGAATGGAATCGACGAAGAGGATAGAATTGCTATGCAAATGATCGAGGAATTGCTCAATTGGAACTGCCCTCTTCCTTCAACTTCAAGTTAA | 606 | 49.83 | MVYSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFDTAEDAARAYDQAAILMNGQNAKTNFPAPKESSDQDPKHDNGSPLSPKALSELLSMKLRKCCKNPSPSLTCLRLDSDNSHIGVWQKRAGTRAASNWVMRIELGKKDTQGLEDSSSLSQLGSVREEEEEEEEEEESRNGIDEEDRIAMQMIEELLNWNCPLPSTSS | 201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2069438 | 2070452 | - | evm.model.ptg000002l.1297 | HCH12g0362 | 555209 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0362 | 201 | Gene3D | AP2/ERF domain | 5 | 64 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0362 | 201 | Pfam | AP2 domain | 6 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0362 | 201 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0362 | 201 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0362 | 201 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0362 | 201 | CDD | AP2 | 6 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0362 | 201 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 149 | IPR050913 | - | |
HCH12g0362 | 201 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
HCH12g0362 | 201 | Coils | Coil | 152 | 178 | - | - | |
HCH12g0362 | 201 | MobiDBLite | consensus disorder prediction | 142 | 180 | - | - | |
HCH12g0362 | 201 | SUPERFAMILY | DNA-binding domain | 6 | 64 | IPR016177 | GO:0003677(InterPro) | |
HCH12g0362 | 201 | MobiDBLite | consensus disorder prediction | 159 | 174 | - | - | |
HCH12g0362 | 201 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0362 | 201 | MobiDBLite | consensus disorder prediction | 58 | 84 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0362 | HCH-Chr12:2069438 | HCH12g0399 | HCH-Chr12:2281322 | 5.60E-25 | dispersed | |
HCH10g0411 | HCH-Chr10:3283636 | HCH12g0362 | HCH-Chr12:2069438 | 5.40E-59 | wgd | |
HCH12g0362 | HCH-Chr12:2069438 | HCH6g0220 | HCH-Chr6:2884158 | 4.10E-52 | wgd | |
HCH12g0362 | HCH-Chr12:2069438 | HCH8g0837 | HCH-Chr8:44874741 | 6.70E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32659 | PF00847 | AP2 | 4.20E-13 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0362 | - | - | - | 0.0 |