Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0393 ATGGCTTACCACAACAACCACCTCTCTCAAGATATCCCTCTTCACTTCTCCGACCAGCAACAACAAACATCCCAACCACTCTCCGACAACTCTTTGCGTAACATTTTACCCGACCAACTCACCGGTCCGGACCCGACTTCTAAATCCGACCACCACCATCACCGCCGTCACCACCACCAGCAGCTTCAAACCGCACCCAATTGGCTCAATAACGCTCTCCTCCGTAACCAAACCCATCATGGTCATTTCTCAACCGACACCACCAACACCAACACCGTCAACGCCAACACCAATTTTCTTAACCTTCATACAACAGCTTCTGATTCCACCGTCTCTCACTCTTCCAACCAATGGCTCTCCCGACCAATCCTCCACCGTAACCATAGCGATGTCATCGATGATGTCGGCGACGCTATGATTGGTGCTGCTGCTACTTTGTCACACGAATCCGCTGACTTGAAAAACGACGCTAATAGCGGTGACGGATTGAATAAGAGTGAAGGCGGCGGCGGTGGAGACGGGGTGTTGAATTGGCAACATGCGAGATATAAAGCTGAGATTTTGACTCATCCCCTTTACGAGCAGCTGCTTTCGGCCCACGTTGCTTGTCTCCGTATCGCTACGCCCGTCGATCAGTTGCCGAGGATCGACGCGCAGCTCGCTCAGTCTCAGAATGTGGTTGCTAAATACTCAGCTTTGAGCCACACTGCTCCTCCTCCTATGGTTGGTGATGATAAAGAGCTTGATCAGTTTATGACACATTATGTTCTTTTGCTTTGTTCCTTTAAAGAGCAACTCCAACAACATGTCCGGGTTCATGCTATGGAAGCAGTAATGGCTTGCTGGGATATTGAGCAATCCCTTCAAAGCTTAACAGGAGTTTCCCCGGGTGAAGGTACAGGAGCAACAATGTCTGATGATGATGAAGACCAGGTAGATAGTGATGTCAATTTGTTTGATGGGAGTTTAGATGGTCCAGACACCATGGGATTTGGTCCTCTTATTCCTACAGAGACTGAGAGGTCCTTAATGGAGAGGGTTAGGCAAGAATTGAAGCATGAATTAAAAGCGGGATACAAAGAGAAGATTGTAGACATAAGAGAAGAAATTCTGAGGAAGAGGAGAGCCGGAAAACTCCCCGGAGATACGACGTCTGTTCTCAAACAATGGTGGCAAACACATTCAAAATGGCCTTATCCTACAGAGGAAGACAAGGCAAGGTTAGTGCAAGAAACTGGTCTACAACTGAAACAGATAAACAATTGGTTCATTAATCAAAGGAAGCGAAACTGGCACAGTAATGCTTCAAGTTCTACAAACTTGAAAAGCAAACGCAAAAGCAATGCAGGTGAAAACAGCGTCGACCGTTGCACGTGA 1377 47.42 MAYHNNHLSQDIPLHFSDQQQQTSQPLSDNSLRNILPDQLTGPDPTSKSDHHHHRRHHHQQLQTAPNWLNNALLRNQTHHGHFSTDTTNTNTVNANTNFLNLHTTASDSTVSHSSNQWLSRPILHRNHSDVIDDVGDAMIGAAATLSHESADLKNDANSGDGLNKSEGGGGGDGVLNWQHARYKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALSHTAPPPMVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWDIEQSLQSLTGVSPGEGTGATMSDDDEDQVDSDVNLFDGSLDGPDTMGFGPLIPTETERSLMERVRQELKHELKAGYKEKIVDIREEILRKRRAGKLPGDTTSVLKQWWQTHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNASSSTNLKSKRKSNAGENSVDRCT 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2235004 2237906 - evm.model.ptg000002l.1266 HCH12g0393 555240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0393 458 ProSiteProfiles ELK domain profile. 350 370 IPR005539 GO:0003677(InterPro)
HCH12g0393 458 SUPERFAMILY Homeodomain-like 372 436 IPR009057 -
HCH12g0393 458 Pfam KNOX2 domain 242 292 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH12g0393 458 MobiDBLite consensus disorder prediction 18 63 - -
HCH12g0393 458 Gene3D - 371 432 - -
HCH12g0393 458 MobiDBLite consensus disorder prediction 292 311 - -
HCH12g0393 458 Pfam Homeobox KN domain 390 429 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH12g0393 458 SMART ELK_2 350 371 IPR005539 GO:0003677(InterPro)
HCH12g0393 458 SMART KNOX1_2 181 225 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH12g0393 458 Pfam ELK domain 350 371 IPR005539 GO:0003677(InterPro)
HCH12g0393 458 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 128 436 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH12g0393 458 FunFam homeobox protein knotted-1-like 3 isoform X1 371 432 - -
HCH12g0393 458 SMART KNOX2_2 238 293 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH12g0393 458 SMART HOX_1 372 437 IPR001356 GO:0003677(InterPro)
HCH12g0393 458 ProSiteProfiles 'Homeobox' domain profile. 370 433 IPR001356 GO:0003677(InterPro)
HCH12g0393 458 MobiDBLite consensus disorder prediction 433 458 - -
HCH12g0393 458 CDD homeodomain 373 434 IPR001356 GO:0003677(InterPro)
HCH12g0393 458 MobiDBLite consensus disorder prediction 18 44 - -
HCH12g0393 458 Pfam KNOX1 domain 183 224 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0393 HCH-Chr12:2235004 HCH7g0260 HCH-Chr7:1790952 1.40E-31 dispersed
HCH5g0461 HCH-Chr5:3108955 HCH12g0393 HCH-Chr12:2235004 4.00E-104 transposed
HCH12g0393 HCH-Chr12:2235004 HCH4g0456 HCH-Chr4:2948091 1.60E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32662 PF03791 KNOX2 1.90E-21 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0393 - - - 0.0