Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0398 ATGTTTCTTTGTGGCATTCTCGTTCTTCTTCTTCTTCTTTATATTAATCAATGGCAATGCCCCATTTGGGTTGGTGCTATACCATTATCGGTCCCCCCTTTTATCTCCATATCTGCTCCTGTTTCGTCTCCATCACTCTCTCCCATTTCTTCTTCTCCTTCTTCTTCTCCTCTCTTGGTAGGAACTCAAATGGAATTTCACAAGAGAATGGCTATTGCTCTTGCTGTAGTTTGCTCTACCCTTGTTGCTATTTTGTTATCATTGATTTGTTTGTGGATTTATCATAGAAGCAATGGTAAAAAATCAGATGCTGAAAAAGGAATTGGGTTAGCTCCATTTTTTAGTAAATTCAATTCTATATGGATGGTTGGAAAGAAAGGATCTGTTTCAGTAATTGATCATAAAGTATTGGAGAAAGCTACAGGTAATTTTCTAGAGACTAATATATTGGGTGAAGGTGGATTTGGACGTGTTTATAAGGCACAATTAGATGAGAAATTGGTAGTAGCTGTCAAGAAACTAGACTGTAGTAGCATAGATGCTGAGAGAGAATTTGAGAATGAAGTTAATCTATTGAGCAGGATTCGTCATCCAAATATTATTTGCCAATTGGGTTGCAGTATTGATGGAGATACAAAGTTTATAGTTTATGAACTGATGGAAAATGGATCTTTGGAAACTCAATTGCATGGGCCTTCTCATGGTTCCTCCTTAAATTGGCATATGAGGATGAAGATTGCTCTTGATGCTGCCAGGGGATTAGAATACCTTCATGAGCATTGTCATCCTGCTGTGATTCACAGAGATATGAAAACCTCCAATATTCTTCTGGATGCCAACTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCAATATGTGATGGAACCCAAAGCAAGAATAACATCAAGCTTTCTGGTACTTTGGGTTATCTAGCTCCAGAATATCTATTAGATGGTAAATTAACAGACAAAAGTGATGTATATGCATTCGGAATCGTCTTACTGGAGCTTCTACTAGGAAGAAAGCCAGTAGAGAAACTCTCACCGTCTCAATGCCAATCCATAGTTACATGGGCCATGCCTCAACTCACTGACAGATCAAAGCTGCCGAACATTGTGGATCCTGTGATCAGAAACACTATGGATCTCAAGCACTTGTATCAGGTTGCTGCTGTAGCTGTGTTATGTGTGCAACCAGAACCAAGCTACAGACCACTGATTACAGATGTTTTACACTCCCTAGTTCCCCTTGTTCCCGTGGAGCTCGGTGGGGCACTACGATTAACGCAACTCGTTGGTCGTGAGGGCGTTGATGTTACTACAAATGGACATTGA 1335 39.93 MFLCGILVLLLLLYINQWQCPIWVGAIPLSVPPFISISAPVSSPSLSPISSSPSSSPLLVGTQMEFHKRMAIALAVVCSTLVAILLSLICLWIYHRSNGKKSDAEKGIGLAPFFSKFNSIWMVGKKGSVSVIDHKVLEKATGNFLETNILGEGGFGRVYKAQLDEKLVVAVKKLDCSSIDAEREFENEVNLLSRIRHPNIICQLGCSIDGDTKFIVYELMENGSLETQLHGPSHGSSLNWHMRMKIALDAARGLEYLHEHCHPAVIHRDMKTSNILLDANFNAKLSDFGLAICDGTQSKNNIKLSGTLGYLAPEYLLDGKLTDKSDVYAFGIVLLELLLGRKPVEKLSPSQCQSIVTWAMPQLTDRSKLPNIVDPVIRNTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLVPLVPVELGGALRLTQLVGREGVDVTTNGH 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2274416 2277248 + evm.model.ptg000002l.1261 HCH12g0398 555245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0398 444 ProSiteProfiles Protein kinase domain profile. 144 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0398 444 SUPERFAMILY Protein kinase-like (PK-like) 120 414 IPR011009 -
HCH12g0398 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0398 444 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524(InterPro)
HCH12g0398 444 FunFam probable receptor-like protein kinase At1g80640 220 419 - -
HCH12g0398 444 Gene3D Transferase(Phosphotransferase) domain 1 220 419 - -
HCH12g0398 444 SMART serkin_6 144 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0398 444 FunFam Protein kinase superfamily protein 111 219 - -
HCH12g0398 444 Gene3D Phosphorylase Kinase; domain 1 115 219 - -
HCH12g0398 444 PANTHER OS01G0750732 PROTEIN 42 418 IPR050885 -
HCH12g0398 444 Pfam Protein tyrosine and serine/threonine kinase 148 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0398 HCH-Chr12:2274416 HCH12g1637 HCH-Chr12:43476148 3.60E-77 dispersed
HCH13g1208 HCH-Chr13:39449003 HCH12g0398 HCH-Chr12:2274416 1.80E-32 transposed
HCH12g0398 HCH-Chr12:2274416 HCH4g0459 HCH-Chr4:2967227 1.90E-155 wgd
HCH12g0398 HCH-Chr12:2274416 HCH4g1273 HCH-Chr4:8778717 1.70E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81106 PF07714 PK_Tyr_Ser-Thr 3.80E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0398 - - - 0.0