Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0399 ATGGCCAGACAGCAAAAACGATACCGTGGCGTCCGACAAAGGCACTGGGGCTCTTGGGTTTCCGAAATTCGCCACCCTCTATTGAAGACAAGAATATGGCTGGGGACGTTTGAAACAGCAGAAGACGCAGCGAGAGCTTATGATGAAGCAGCCAGGATGATGTGTGGGCCAAGAGCAAGAACCAACTTTCCGTACAATCAAAATGCAATGATATCTCATTCCCAGTCATCTTCTAAGCTTCTATCGCCAACTTTGATAGCAAAACTTCACAGATGCTGTATAGCTTCTCTTCAACTTGGCAATCAAAACCCACAAGAATATAAGCAAGAACCGGCGTCTGATCGTGTAATGGTGAAAAATGTGAACATGGAAAGAGAGTGTGAGGGATTCAAGACGAAGACGATGGAAGATGATGATCACATTGAGCAGATGATAGAGGAGTTGCTTTATTATGGGTCCATGGAGTTTTTGTAA 474 44.51 MARQQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARMMCGPRARTNFPYNQNAMISHSQSSSKLLSPTLIAKLHRCCIASLQLGNQNPQEYKQEPASDRVMVKNVNMERECEGFKTKTMEDDDHIEQMIEELLYYGSMEFL 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2281322 2281963 + evm.model.ptg000002l.1260 HCH12g0399 555246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0399 157 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0399 157 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0399 157 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0399 157 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
HCH12g0399 157 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0399 157 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0399 157 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0399 157 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 129 - -
HCH12g0399 157 FunFam Ethylene-responsive transcription factor 2 6 66 - -
HCH12g0399 157 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0411 HCH-Chr10:3283636 HCH12g0399 HCH-Chr12:2281322 3.00E-25 dispersed
HCH12g0362 HCH-Chr12:2069438 HCH12g0399 HCH-Chr12:2281322 5.60E-25 dispersed
HCH12g0399 HCH-Chr12:2281322 HCH4g0462 HCH-Chr4:2986000 2.40E-47 dispersed
HCH12g0399 HCH-Chr12:2281322 HCH4g0461 HCH-Chr4:2981854 1.10E-47 wgd
HCH12g0399 HCH-Chr12:2281322 HCH4g1272 HCH-Chr4:8772694 1.00E-42 wgd
HCH12g0399 HCH-Chr12:2281322 HCH6g0276 HCH-Chr6:3882899 1.90E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32663 PF00847 AP2 9.60E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0399 - - - 0.0