Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0399 | ATGGCCAGACAGCAAAAACGATACCGTGGCGTCCGACAAAGGCACTGGGGCTCTTGGGTTTCCGAAATTCGCCACCCTCTATTGAAGACAAGAATATGGCTGGGGACGTTTGAAACAGCAGAAGACGCAGCGAGAGCTTATGATGAAGCAGCCAGGATGATGTGTGGGCCAAGAGCAAGAACCAACTTTCCGTACAATCAAAATGCAATGATATCTCATTCCCAGTCATCTTCTAAGCTTCTATCGCCAACTTTGATAGCAAAACTTCACAGATGCTGTATAGCTTCTCTTCAACTTGGCAATCAAAACCCACAAGAATATAAGCAAGAACCGGCGTCTGATCGTGTAATGGTGAAAAATGTGAACATGGAAAGAGAGTGTGAGGGATTCAAGACGAAGACGATGGAAGATGATGATCACATTGAGCAGATGATAGAGGAGTTGCTTTATTATGGGTCCATGGAGTTTTTGTAA | 474 | 44.51 | MARQQKRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARMMCGPRARTNFPYNQNAMISHSQSSSKLLSPTLIAKLHRCCIASLQLGNQNPQEYKQEPASDRVMVKNVNMERECEGFKTKTMEDDDHIEQMIEELLYYGSMEFL | 157 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2281322 | 2281963 | + | evm.model.ptg000002l.1260 | HCH12g0399 | 555246 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0399 | 157 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0399 | 157 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0399 | 157 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0399 | 157 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677(InterPro) | |
HCH12g0399 | 157 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0399 | 157 | Gene3D | AP2/ERF domain | 6 | 66 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0399 | 157 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0399 | 157 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 4 | 129 | - | - | |
HCH12g0399 | 157 | FunFam | Ethylene-responsive transcription factor 2 | 6 | 66 | - | - | |
HCH12g0399 | 157 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0411 | HCH-Chr10:3283636 | HCH12g0399 | HCH-Chr12:2281322 | 3.00E-25 | dispersed | |
HCH12g0362 | HCH-Chr12:2069438 | HCH12g0399 | HCH-Chr12:2281322 | 5.60E-25 | dispersed | |
HCH12g0399 | HCH-Chr12:2281322 | HCH4g0462 | HCH-Chr4:2986000 | 2.40E-47 | dispersed | |
HCH12g0399 | HCH-Chr12:2281322 | HCH4g0461 | HCH-Chr4:2981854 | 1.10E-47 | wgd | |
HCH12g0399 | HCH-Chr12:2281322 | HCH4g1272 | HCH-Chr4:8772694 | 1.00E-42 | wgd | |
HCH12g0399 | HCH-Chr12:2281322 | HCH6g0276 | HCH-Chr6:3882899 | 1.90E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32663 | PF00847 | AP2 | 9.60E-13 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0399 | - | - | - | 0.0 |