Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0404 | ATGACTGTTGAGCAAAGAATTGATGACCCAAATGATCAATTTCCTGCTGGAATGCGTGTATTGGCTGTTGATGATGACCCCACTTGTCTTTTGATCTTGGAAACTTTGCTTCGTCGATGTCAATATCATGTCACTACAACCAGTCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAAAATATGTTTGACGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGTTGCTGGAGCTTGTTGGGTTGGAGATGGACCTACCTGTTATTATGCTGTCTGCAAATGGCGATCCCAAGCTTGTGATGAAGGGAATTACCCATGGAGCATGTGATTACTTGCTGAAACCTGTCCGTATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAGTTTGATCCAAAGGACCAAATGAACAAGCACGATCTCGAGAACGGTGAAGAAGCAGCTGATCCAAATGGGAAGTTTAATAAAAAAAGAAAGGATCAGAACTACGACGAGGATGAGGAAAATGATGATAATGGGCAAGAGAATGAGGATTCGTCTTCACAGAAGAAAGCTCGTGTTGTGTGGTCTGTGGAGCTGCACAGGAAGTTTGTAAATGCTGTTAACCAATTAGGCATAGACAAGGCGGTGCCTAAAAAGATATTGGATTTGATGAATGTTGAAAAACTTTCAAGAGAAAATGTAGCTAGCCATCTCCAGAAATATCGGCTTTACCTCAAGAGAATCAGCTGTGTGGCAAATCAGCAAGCCAACATGGTGACAGCATTAAGCAGTGCAGATCCTTCCTATTTGCGAATCGGTTCTCTTAATGGAATTGGAAATTTTCATTCCTTAACTGGACCTGCACAGTTTCCTTCCACTGCTTTTAGATCCATCCCAACTACTGGGATGCTTGGTAGATTGAATTCTCCTGCTTGTATTGGTATGCATGGCCTTTCTTCTTCAGGGACAGTTCAACTGGGTAACTTGAACAATTCGAGTAACGGTCAGCCTACATTTCAGCCAGTCATACTTTCTGGAAACCGTAATGGGAATATTTTCCGAGGAATGCCAGAGCCATCAGAACTCGATCAACTACGACATGTTAAGCATGTGACACATGTCGATGATCTCTCTCCGGCTTTTGATGAGAGAACTTCATTCCCTGCTTCTGTTGGCTTCCCAAATGCAAACATGACTGCTGGTAGCTTGAGCAATCCTCATTTAGGGTTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGGTGTCCTTGGTAATAGAAAATTTGGATCTCAATCTTCCATATCTTCAGTATCCTTAAATTCAGAAATATCTCATCCTTCCCTAGATAATGTTAGACCCACCAGTGATAGTTGGCCGAAAGCTGTTCATTCATCTAGAGTCCACATGAATACTTTTCCATCCAGCAACCTTTCTAATATCGCTATTCCGTATCATAGTCACTTGAGAGACAATACTACCAGTGCATTGAATATAGGAAACGGTCTTTCTGACATGTCTTCTATTACTTCAGTATCTACCCCATCCCAGAATTCAAGAACAGATTCTCAACGTCAATCAGCCTCAAGCAGCAATAAATATGAGCAAATAATCGCAAAGGTTCCAGTTCAAGATTGGAATAACCATAAAGAAGATGCCTATTACCACACAACTGTGGCCTGTAGCTTGTCAAATTCTTTGCTTCCAGTGAATGGCGCTGCTGAAATGTTGTCCAAGAATTTGGAAAATCAGAGCAGAATCTTCTGTGGAAGCAAGGATTCGAATGTGATTGGTCAAACAAATGTTCTTGATCATACAATGGTGAAACGTGATGAATTCAAGAAATCAGCAATGGAGACATCACTCATGTGGAAGCAAGGGTATCCTTATGATCAACAAAAGCTGCAAGCCAGATTTTCTTCTAGTAACTGTGGCTCCTTAGAAGACATAGCGTGTGCAATGATGAAACAGGAACAAGATAATGGAATAATATTGGAAGGAGACTTTGGATGTGATAATTACCCCATTGGAACATGCTTGTGA | 2055 | 41.27 | MTVEQRIDDPNDQFPAGMRVLAVDDDPTCLLILETLLRRCQYHVTTTSQAVMALKLLRENKNMFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDQMNKHDLENGEEAADPNGKFNKKRKDQNYDEDEENDDNGQENEDSSSQKKARVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLSRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLNGIGNFHSLTGPAQFPSTAFRSIPTTGMLGRLNSPACIGMHGLSSSGTVQLGNLNNSSNGQPTFQPVILSGNRNGNIFRGMPEPSELDQLRHVKHVTHVDDLSPAFDERTSFPASVGFPNANMTAGSLSNPHLGLTNDPLISEVQHHGVLGNRKFGSQSSISSVSLNSEISHPSLDNVRPTSDSWPKAVHSSRVHMNTFPSSNLSNIAIPYHSHLRDNTTSALNIGNGLSDMSSITSVSTPSQNSRTDSQRQSASSSNKYEQIIAKVPVQDWNNHKEDAYYHTTVACSLSNSLLPVNGAAEMLSKNLENQSRIFCGSKDSNVIGQTNVLDHTMVKRDEFKKSAMETSLMWKQGYPYDQQKLQARFSSSNCGSLEDIACAMMKQEQDNGIILEGDFGCDNYPIGTCL | 684 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2307853 | 2311976 | + | evm.model.ptg000002l.1255 | HCH12g0404 | 555251 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0404 | 684 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 14 | 401 | IPR045279 | GO:0009736(InterPro) | |
HCH12g0404 | 684 | MobiDBLite | consensus disorder prediction | 512 | 537 | - | - | |
HCH12g0404 | 684 | PIRSF | RR_ARR_type-B | 1 | 683 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
HCH12g0404 | 684 | SUPERFAMILY | Homeodomain-like | 191 | 250 | IPR009057 | - | |
HCH12g0404 | 684 | SMART | REC_2 | 18 | 130 | IPR001789 | GO:0000160(InterPro) | |
HCH12g0404 | 684 | MobiDBLite | consensus disorder prediction | 141 | 192 | - | - | |
HCH12g0404 | 684 | Pfam | Response regulator receiver domain | 20 | 128 | IPR001789 | GO:0000160(InterPro) | |
HCH12g0404 | 684 | Gene3D | - | 189 | 252 | - | - | |
HCH12g0404 | 684 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 190 | 249 | IPR017930 | - | |
HCH12g0404 | 684 | MobiDBLite | consensus disorder prediction | 141 | 173 | - | - | |
HCH12g0404 | 684 | Pfam | Myb-like DNA-binding domain | 195 | 245 | IPR001005 | - | |
HCH12g0404 | 684 | CDD | REC_typeB_ARR-like | 20 | 134 | - | - | |
HCH12g0404 | 684 | SUPERFAMILY | CheY-like | 17 | 149 | IPR011006 | - | |
HCH12g0404 | 684 | FunFam | Two-component response regulator | 189 | 252 | - | - | |
HCH12g0404 | 684 | Gene3D | - | 17 | 153 | - | - | |
HCH12g0404 | 684 | ProSiteProfiles | Response regulatory domain profile. | 19 | 134 | IPR001789 | GO:0000160(InterPro) | |
HCH12g0404 | 684 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 193 | 246 | IPR006447 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0367 | HCH-Chr10:2965992 | HCH12g0404 | HCH-Chr12:2307853 | 9.00E-128 | dispersed | |
HCH12g0404 | HCH-Chr12:2307853 | HCH6g1728 | HCH-Chr6:49883382 | 2.80E-84 | dispersed | |
HCH12g0404 | HCH-Chr12:2307853 | HCH8g0917 | HCH-Chr8:45479988 | 1.80E-139 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32665 | PF00072 | Response_reg | 3.10E-23 | CL0304 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0404 | K14491 | - | csv:101215220 | 1116.29 |