Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0404 ATGACTGTTGAGCAAAGAATTGATGACCCAAATGATCAATTTCCTGCTGGAATGCGTGTATTGGCTGTTGATGATGACCCCACTTGTCTTTTGATCTTGGAAACTTTGCTTCGTCGATGTCAATATCATGTCACTACAACCAGTCAGGCTGTTATGGCACTCAAGTTGTTGAGAGAAAACAAAAATATGTTTGACGTGGTTATCAGTGATGTCCACATGCCTGACATGGATGGATTTAAGTTGCTGGAGCTTGTTGGGTTGGAGATGGACCTACCTGTTATTATGCTGTCTGCAAATGGCGATCCCAAGCTTGTGATGAAGGGAATTACCCATGGAGCATGTGATTACTTGCTGAAACCTGTCCGTATTGAGGAGCTAAAGAACATTTGGCAGCATGTAATCAGGAGAAAGAAGTTTGATCCAAAGGACCAAATGAACAAGCACGATCTCGAGAACGGTGAAGAAGCAGCTGATCCAAATGGGAAGTTTAATAAAAAAAGAAAGGATCAGAACTACGACGAGGATGAGGAAAATGATGATAATGGGCAAGAGAATGAGGATTCGTCTTCACAGAAGAAAGCTCGTGTTGTGTGGTCTGTGGAGCTGCACAGGAAGTTTGTAAATGCTGTTAACCAATTAGGCATAGACAAGGCGGTGCCTAAAAAGATATTGGATTTGATGAATGTTGAAAAACTTTCAAGAGAAAATGTAGCTAGCCATCTCCAGAAATATCGGCTTTACCTCAAGAGAATCAGCTGTGTGGCAAATCAGCAAGCCAACATGGTGACAGCATTAAGCAGTGCAGATCCTTCCTATTTGCGAATCGGTTCTCTTAATGGAATTGGAAATTTTCATTCCTTAACTGGACCTGCACAGTTTCCTTCCACTGCTTTTAGATCCATCCCAACTACTGGGATGCTTGGTAGATTGAATTCTCCTGCTTGTATTGGTATGCATGGCCTTTCTTCTTCAGGGACAGTTCAACTGGGTAACTTGAACAATTCGAGTAACGGTCAGCCTACATTTCAGCCAGTCATACTTTCTGGAAACCGTAATGGGAATATTTTCCGAGGAATGCCAGAGCCATCAGAACTCGATCAACTACGACATGTTAAGCATGTGACACATGTCGATGATCTCTCTCCGGCTTTTGATGAGAGAACTTCATTCCCTGCTTCTGTTGGCTTCCCAAATGCAAACATGACTGCTGGTAGCTTGAGCAATCCTCATTTAGGGTTAACTAATGATCCCTTGATTTCAGAAGTCCAGCATCATGGTGTCCTTGGTAATAGAAAATTTGGATCTCAATCTTCCATATCTTCAGTATCCTTAAATTCAGAAATATCTCATCCTTCCCTAGATAATGTTAGACCCACCAGTGATAGTTGGCCGAAAGCTGTTCATTCATCTAGAGTCCACATGAATACTTTTCCATCCAGCAACCTTTCTAATATCGCTATTCCGTATCATAGTCACTTGAGAGACAATACTACCAGTGCATTGAATATAGGAAACGGTCTTTCTGACATGTCTTCTATTACTTCAGTATCTACCCCATCCCAGAATTCAAGAACAGATTCTCAACGTCAATCAGCCTCAAGCAGCAATAAATATGAGCAAATAATCGCAAAGGTTCCAGTTCAAGATTGGAATAACCATAAAGAAGATGCCTATTACCACACAACTGTGGCCTGTAGCTTGTCAAATTCTTTGCTTCCAGTGAATGGCGCTGCTGAAATGTTGTCCAAGAATTTGGAAAATCAGAGCAGAATCTTCTGTGGAAGCAAGGATTCGAATGTGATTGGTCAAACAAATGTTCTTGATCATACAATGGTGAAACGTGATGAATTCAAGAAATCAGCAATGGAGACATCACTCATGTGGAAGCAAGGGTATCCTTATGATCAACAAAAGCTGCAAGCCAGATTTTCTTCTAGTAACTGTGGCTCCTTAGAAGACATAGCGTGTGCAATGATGAAACAGGAACAAGATAATGGAATAATATTGGAAGGAGACTTTGGATGTGATAATTACCCCATTGGAACATGCTTGTGA 2055 41.27 MTVEQRIDDPNDQFPAGMRVLAVDDDPTCLLILETLLRRCQYHVTTTSQAVMALKLLRENKNMFDVVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKFDPKDQMNKHDLENGEEAADPNGKFNKKRKDQNYDEDEENDDNGQENEDSSSQKKARVVWSVELHRKFVNAVNQLGIDKAVPKKILDLMNVEKLSRENVASHLQKYRLYLKRISCVANQQANMVTALSSADPSYLRIGSLNGIGNFHSLTGPAQFPSTAFRSIPTTGMLGRLNSPACIGMHGLSSSGTVQLGNLNNSSNGQPTFQPVILSGNRNGNIFRGMPEPSELDQLRHVKHVTHVDDLSPAFDERTSFPASVGFPNANMTAGSLSNPHLGLTNDPLISEVQHHGVLGNRKFGSQSSISSVSLNSEISHPSLDNVRPTSDSWPKAVHSSRVHMNTFPSSNLSNIAIPYHSHLRDNTTSALNIGNGLSDMSSITSVSTPSQNSRTDSQRQSASSSNKYEQIIAKVPVQDWNNHKEDAYYHTTVACSLSNSLLPVNGAAEMLSKNLENQSRIFCGSKDSNVIGQTNVLDHTMVKRDEFKKSAMETSLMWKQGYPYDQQKLQARFSSSNCGSLEDIACAMMKQEQDNGIILEGDFGCDNYPIGTCL 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2307853 2311976 + evm.model.ptg000002l.1255 HCH12g0404 555251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0404 684 PANTHER TWO-COMPONENT RESPONSE REGULATOR 14 401 IPR045279 GO:0009736(InterPro)
HCH12g0404 684 MobiDBLite consensus disorder prediction 512 537 - -
HCH12g0404 684 PIRSF RR_ARR_type-B 1 683 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
HCH12g0404 684 SUPERFAMILY Homeodomain-like 191 250 IPR009057 -
HCH12g0404 684 SMART REC_2 18 130 IPR001789 GO:0000160(InterPro)
HCH12g0404 684 MobiDBLite consensus disorder prediction 141 192 - -
HCH12g0404 684 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160(InterPro)
HCH12g0404 684 Gene3D - 189 252 - -
HCH12g0404 684 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 190 249 IPR017930 -
HCH12g0404 684 MobiDBLite consensus disorder prediction 141 173 - -
HCH12g0404 684 Pfam Myb-like DNA-binding domain 195 245 IPR001005 -
HCH12g0404 684 CDD REC_typeB_ARR-like 20 134 - -
HCH12g0404 684 SUPERFAMILY CheY-like 17 149 IPR011006 -
HCH12g0404 684 FunFam Two-component response regulator 189 252 - -
HCH12g0404 684 Gene3D - 17 153 - -
HCH12g0404 684 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160(InterPro)
HCH12g0404 684 NCBIfam myb-like DNA-binding domain, SHAQKYF class 193 246 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0367 HCH-Chr10:2965992 HCH12g0404 HCH-Chr12:2307853 9.00E-128 dispersed
HCH12g0404 HCH-Chr12:2307853 HCH6g1728 HCH-Chr6:49883382 2.80E-84 dispersed
HCH12g0404 HCH-Chr12:2307853 HCH8g0917 HCH-Chr8:45479988 1.80E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32665 PF00072 Response_reg 3.10E-23 CL0304 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0404 K14491 - csv:101215220 1116.29