Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0412 ATGGAGGAAAGGCACGTTCTGTTTGGCAAATATGAAATCGGAAGATTACTCGGGAAAGGAACATTCGCGAAAGTCTATTACGGGAAGGAATTGGAATCCGGAGAAAACGTAGCGATTAAAGTTATTAACAAAGATCAGGTCAAGAAGGAAGGAATGATGGAGCAAATCAAGCGTGAGATTTCTGTTATGCGTCTCGTTCGTCATCCGAATATCGTGGAGTTGAAGGAAGTTATGGCGACGAAAACCAAAATCTTCTTCGTCATGGATTACATACGTGGCGGTGAGCTATTCGCTAAAGTCGCCAGAGGAAAACTCAAAGAAGATATGGCTCGTAAGTATTTCCAGCAATTGATCAGCGCCGTTGATTTCTGTCATAGTCGAGGAGTTTCTCATCGTGATTTGAAACCGGAGAATTTGTTGCTTGATGAGAACGAAGACCTGAAAATCTCCGATTTCGGTCTCTCCGCCTTACCGGAACAGCTCCGGTACGACGGTCTTCTACACACGCAGTGTGGAACGCCGGCGTACGTCGCCCCGGAAGTTTTGAAAAGAAGAGGCTACGACGGAGCGAAAGCCGATATCTGGTCTTGCGGTGTGATTTTATACGTTTTGTTAGCTGGATTCCTTCCGTTTCAAGATGAGAATGTAATGACGATGTATAAGAAAGTTTTCAAAGCTGAATTTGAATGTCCGCCGTGGTTTTCGGCAGAATCGAAGCGGTTAATTTCGAAGATTCTCGTTGTGGATCCTGAAAGACGAATTACGATTCCAGCAATTAAACGCGTGCCTTGGTTCCGAAGAGAATTCTCGAGATCGCGCTCGATGAAAGAGCTGAATGCTTTTAAAACAGATGATTCCGGTTTCGATTCGGATTCGGATTTCGATCCGGATAGTCCGAAATTATCAACGCCGAAATTCTTCAATGCGTTCGAATTGATATCGTCGATGTCGTCTGGATTCGATTTATCGAGTTTGTTCGAGAATAAAAAGAAGACAGGATCGATGTTCACTTCGAGATTTTCTGTATCGGTGATTATGGAGAAGATTGAGAAGGCGGCGCAGAGATTGAGTTTTAAAGTATCGGAAGTGAAAGATTTTAAGCTCCGGCTGTTAGGTCCAGCGGAAGGACGGAAAGGAAAGCTTTCAGTGACGGCGGAGGTATTCGAGATAGCGCCGGAAGTTTCCATCGTTGAATTCTCGAAGTCGTCCGGCGATACTTTGGAATATGCCAAGTTTTGTGACGAAGACGTGAGGCCGGCGCTGAAAGATATTGTTTGGAAGTGGCAAGGGGATTGTGATTGTGATTGTGGCCCTAACGTCGACGGAAACGGACATAACGGTCAAGTTGACGGCGACGACGATTTTTTGGTAAAGGAATAA 1380 45.0 MEERHVLFGKYEIGRLLGKGTFAKVYYGKELESGENVAIKVINKDQVKKEGMMEQIKREISVMRLVRHPNIVELKEVMATKTKIFFVMDYIRGGELFAKVARGKLKEDMARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEQLRYDGLLHTQCGTPAYVAPEVLKRRGYDGAKADIWSCGVILYVLLAGFLPFQDENVMTMYKKVFKAEFECPPWFSAESKRLISKILVVDPERRITIPAIKRVPWFRREFSRSRSMKELNAFKTDDSGFDSDSDFDPDSPKLSTPKFFNAFELISSMSSGFDLSSLFENKKKTGSMFTSRFSVSVIMEKIEKAAQRLSFKVSEVKDFKLRLLGPAEGRKGKLSVTAEVFEIAPEVSIVEFSKSSGDTLEYAKFCDEDVRPALKDIVWKWQGDCDCDCGPNVDGNGHNGQVDGDDDFLVKE 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2388446 2389825 + evm.model.ptg000002l.1247 HCH12g0412 555259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0412 459 SUPERFAMILY Protein kinase-like (PK-like) 7 307 IPR011009 -
HCH12g0412 459 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524(InterPro)
HCH12g0412 459 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 419 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH12g0412 459 Gene3D Transferase(Phosphotransferase) domain 1 2 302 - -
HCH12g0412 459 SMART serkin_6 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0412 459 FunFam Non-specific serine/threonine protein kinase 302 426 - -
HCH12g0412 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0412 459 FunFam Non-specific serine/threonine protein kinase 2 90 - -
HCH12g0412 459 Gene3D Kinase associated domain 1, KA1 303 427 - -
HCH12g0412 459 Pfam NAF domain 304 360 IPR004041 GO:0007165(InterPro)
HCH12g0412 459 ProSiteProfiles NAF domain profile. 302 327 IPR018451 GO:0007165(InterPro)
HCH12g0412 459 ProSiteProfiles Protein kinase domain profile. 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0412 459 FunFam Non-specific serine/threonine protein kinase 4 300 - -
HCH12g0412 459 CDD STKc_SnRK3 10 264 - -
HCH12g0412 459 Pfam Protein kinase domain 11 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0412 459 CDD CIPK_C 308 422 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0412 HCH-Chr12:2388446 HCH3g0713 HCH-Chr3:5105713 8.20E-133 dispersed
HCH12g0412 HCH-Chr12:2388446 HCH6g0291 HCH-Chr6:4133601 1.90E-166 wgd
HCH12g0412 HCH-Chr12:2388446 HCH8g0925 HCH-Chr8:45556791 2.70E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81107 PF00069 Pkinase 8.40E-74 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0412 - - - 0.0