Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0414 ATGGCGTTGTTCCGGAAGTTCTTTTATCGGAAGCCGCCGGACGGGCTTCTGGAGATCTCTGAAAGGGTTTATGTTTTTGATTGCTGCTTTACCACGGAGGTTTTGGAAGAAGACGCTTATAAAGTCTATATTGGAGGCATTGTGGGTCAACTTCGTGAGCATCTTACTGACGCTTCATTCATGGTGTTCAATTTACGAGAGGGAGATAACCAAAGCCTGATTGCTAGTATATTATCCATGTATGATATGACTGTCATGGATTATCCTCGACATTACGAAGGCTGCCCTCTACTCACTATGGAGATGATTCACCATTTCTTGAGATCCAGTGAAAGCTGGCTCTCCCTTGGACAACAGAATGTACTTTTGATGCACTGTGAACGAGGGGGATGGCCAGTCTTGGCTTTCATGTTGGCTGCTCTTTTGATTTACAGGAAGCAGTACGTCGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGTCGCCTCTTAATCCATTGCCTTCACAATTGAGGTATCTCCAATATGTTTCAAGAAGAAACGTGGGATCAGAATGGCCTCCACTTGATAGGGCACTTACTCTAGACTGCATAATAGTTAGATTTATTCCTAATATGGATGGGGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCTTTTATGGCTGCTGATCGAACTTCGAAAGTATTGTTCTCAACCCCTAAAAAGAGCAAACTTGTTCGCCAGTATAAGCAGGTAGAAAGTGAACTAGTTAAAATTGATATTGATTGCCATATCCAAGGCGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTTCGAGTCATGTTTAATACAGCTTTTATAAGATCGAACATTTTGATGCTTAATCGTGATGACATTGATATCCTATGGCATGCCAAGGATCGATTTCCTAAGGATTTTAGAGCAGAGGTGCTTTTCTCAGAGATGGATGCTGCTACATCACTTATTTCAATTGAATTGCCAAATATTGAGGAGAAAGATGGTCTTCCAGTTGAAGCATTTGCTAAAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTTAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCACAAAATAACTGCTTCAAATGTGCTTCAAGAGAAACTGGTTTGTTCTGCCAGCTTTTTAGAAAGAAACCAGTTGCTTGACTCTTCTTTTGAAAAACTAAGCTTCGAATCAGAGATATCTGAAGACAACATTAGAAGTCCTCAATCCAAGGTGCAAACAAGTCAATCTCAACTTTCAATTGAAGCGTCTCATGCTGCAAATTTGATAAGAGCAAAGATTGAGCCCCCGAGACTGCCGGTTGCCTTCCAACTACCACCCCAGTCTAAAATTATAACCCAACGGATGTCTCAAGCTTCCTTGTCTGCACCAGTCTCCTATCGTAGTTCTGGGCAACATACACCTCGCCCAATATTAAGATATCACAGTGCACCCTCTTCTCTTGGAATTACAGCTTTATTACATGATCATTCCAAATCTAGTGACAAAGAAGTCATACATACAGTGGCAGTGTCTTCACCATCATCTGCTCTGTCAGCTGTGAGTGTTTTAAGTTCACAGAAAGATATGCAACATAGTGAGTTTCCTATTTTGCCTCTCCCGCTGCCATTAGGGCCAAGTTCTACCTCAGAAAGTTCTCCAACCACCACGTGGACAACTTCAAATATTCCTAATCAGCCGTTGCTTCACCAACTTTCTTTGAAAACTGTAAATTCTTCAATTTCTCAACATTCTCAAACCACATCACCAGGTAGAAGTCAATCGTCCCCATTTTCACTTCAACCACCTACTCCTCTTCCTGGAAAATCTCTGCGCTCTTGCAATGAGAACTTGCCTTCCATACCCTCCTTTTCCCCTTCTTTCTCAGGATCATCTCCACCTTCCTCTTTTGAAAATTTATTTTCTGTTCCCACCCCTCCCCCACCATCTTCTCTTGATTCACCTTCCTTCTTGGTAACATCTTTATCTTCTATGTTGACGAATTCTTCATTTCCCTCATCTCTGCCACAACCTTTTCCTACCTCAGTACTATTATCCTCCCCAAAGACATCAATATCAGTAGTCCCTCAACCTTCTCCACCCTGTAGTATTCCTTCATCAAATGATCGTTTGGGTTCTTCTCAGTCACCTAAAAAGAACTCGATAGTTGTGCCCAGCCCTCCTCCTCCTCCTCCTCCAACTCCTCCAAGTTTTAAATCTAACTCTGGTCCTAGTGTTGTATCCTTAACATCAATGCCACCACCCCCACCCCCGCCTCCCCATTTTTCATCGAATGACTCTAAAATGACTGTTGAAAAGTTGACAGGTATGCACGATCCTCCTCATCCACCACCGCCTCCACCTTTTTTGAGTTCTAGATCTACCCTTGGTCTAAGTATTGTGTCTTCAGTGCCTCTGCCTCCACCCCCTCCTAGTTTTGCATCAAAGGATTCAGCAATGATAGTTAAGAACTTGACAGTCATATCTGGCCCTCCTCCTCCTCCTCCTCTACCCCCACCTTCTCTTATTTCTAGATCAACCCTAGGTCCTAGTGTTGTGCCTTCTGTGCCTCCACCTCCCCCTCCTCCTAGTCTTGCACCAAAGGATTCTGCCATAACAATGAAGAACTTGACAGGTGTGTGTAGCCCCCAACCTCCTCCTCCTCCTCCTCCTCCACTTTTTGCAAAATCTAGAACTACCTTATGTCCTAGTGTTGTATCATCAACTCCACCACCACCACCACCTCCAGGTTTTTCAATGAAGGATTCTGCAGTAAATAAAAATGCACATACTCCTCCTGCACCCCCTCCTCCCGCCCTTAGTGGTAATAAAATCTCAAAAGTCAATGGTACTAGTAATGGAAACATTCCTTCTATTCCTGGGCCACCTTCCAGTGCTCTCTTCAATGCAAAGGAACGGGGCCATGGACGTATGAGCCTGAAAAACCAGTCTCAACCTAAAAAGACCAATTTGAAGCCTTATCACTGGTTAAAGCTAACGAGAGCCATGCAGGGAAGCTTATGGGCAGAGGCACAAAAGACTGATGAAGCCTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTACAGTTGCACCTAATTCAGATCGTGGAAATTCTGGTGGAAATTCAAATCGCCGTGCCTCAGGGCCAAAATCGGACAAAGTTCATTTGATTGAACTTCGACGGGCGTATAATTGTGAAATTATGCTTTCTAAAGTTAAGATTCCTTTGCCTGATATGATGAGTTCTGTCCTGGCCTTGGATGAGTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATAAAGTTTTGTCCAACAAAAGAAGAAATGGAACTACTTAAGGGTTACGGTGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTTCTAGAATTGATGAAAGTGCCGCGAGTAGAATCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCATTCACAGGTCTCTGACCTCAGAAATAGTCTGAATACTATCAATTCGGCATCAGAAGAGACCAGAGGTTCGGTGAAGTTGAAAAGGGTAATGCAAACTATTCTTTCTTTGGGCAATGCTTTGAACCATGGAACGGCTAGAGGTTCTGCTATCGGATTTCGGCTTGATAGTCTTCTCAAACTCACCGATACACGGGCAAGAAACAACAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTTCCAGAACTTTTAGTTTTTCCAAAAGACCTTGTGAGTTTGGAAGCTTCTACGAAGATACAACTGAAATATTTAGCTGAGGAAATGCAAGCCATTAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGACTAATTCAGAAAATGATGGCCCTGTTTCAGAAATCTTTTGCAGGACTCTAAAGGACTTCCTTTCTCATGCTGAGGCTGAAGTGAGGTCTTTGGCCTCACTTTATTCTAATGTGGGTAGAAATGCCGATGCACTGGCTCTTTATTTTGGGGAGGATCCAGCCCGTTGCCCTTTTGAGCAAGTTGTATCAACTCTATTCAATTTTGTGCGGATGTTTGTTCGAGCGCATGACGAAAACTATAAGCAACTTGAATTCGAAAAGAAGAAAGCAAAGAAGGAAGCCGAAAAGGAGAAGTTGAAGGTCAGTACTCCGAAACAGGAGTCTAAATTCTTGATGCAGACTCCAATGTAG 4281 43.07 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDAYKVYIGGIVGQLREHLTDASFMVFNLREGDNQSLIASILSMYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYVGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCIIVRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVESELVKIDIDCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDRFPKDFRAEVLFSEMDAATSLISIELPNIEEKDGLPVEAFAKVQEIFSNVDWLSPKADAALNVLHKITASNVLQEKLVCSASFLERNQLLDSSFEKLSFESEISEDNIRSPQSKVQTSQSQLSIEASHAANLIRAKIEPPRLPVAFQLPPQSKIITQRMSQASLSAPVSYRSSGQHTPRPILRYHSAPSSLGITALLHDHSKSSDKEVIHTVAVSSPSSALSAVSVLSSQKDMQHSEFPILPLPLPLGPSSTSESSPTTTWTTSNIPNQPLLHQLSLKTVNSSISQHSQTTSPGRSQSSPFSLQPPTPLPGKSLRSCNENLPSIPSFSPSFSGSSPPSSFENLFSVPTPPPPSSLDSPSFLVTSLSSMLTNSSFPSSLPQPFPTSVLLSSPKTSISVVPQPSPPCSIPSSNDRLGSSQSPKKNSIVVPSPPPPPPPTPPSFKSNSGPSVVSLTSMPPPPPPPPHFSSNDSKMTVEKLTGMHDPPHPPPPPPFLSSRSTLGLSIVSSVPLPPPPPSFASKDSAMIVKNLTVISGPPPPPPLPPPSLISRSTLGPSVVPSVPPPPPPPSLAPKDSAITMKNLTGVCSPQPPPPPPPPLFAKSRTTLCPSVVSSTPPPPPPPGFSMKDSAVNKNAHTPPAPPPPALSGNKISKVNGTSNGNIPSIPGPPSSALFNAKERGHGRMSLKNQSQPKKTNLKPYHWLKLTRAMQGSLWAEAQKTDEASKAPEFDMSELESLFSTVAPNSDRGNSGGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMSSVLALDESALDVDQVENLIKFCPTKEEMELLKGYGGDKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFHSQVSDLRNSLNTINSASEETRGSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLVFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELTNSENDGPVSEIFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHDENYKQLEFEKKKAKKEAEKEKLKVSTPKQESKFLMQTPM 1426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2400867 2411097 - evm.model.ptg000002l.1245 HCH12g0414 555261

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0414 1426 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 1060 1083 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 878 893 - -
HCH12g0414 1426 SMART PTEN_C2_2 197 337 IPR014020 -
HCH12g0414 1426 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 603 625 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 854 869 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 562 591 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 970 988 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 661 680 - -
HCH12g0414 1426 SUPERFAMILY Formin homology 2 domain (FH2 domain) 937 1402 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 730 747 - -
HCH12g0414 1426 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1007 1408 IPR015425 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 1060 1079 - -
HCH12g0414 1426 Gene3D - 196 341 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 907 922 - -
HCH12g0414 1426 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
HCH12g0414 1426 Gene3D Formin, FH2 domain 1001 1393 IPR042201 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 1401 1426 - -
HCH12g0414 1426 PANTHER FORMIN-J 1 1408 IPR051144 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 748 765 - -
HCH12g0414 1426 Pfam Formin Homology 2 Domain 1009 1382 IPR015425 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 571 591 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 717 820 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 603 643 - -
HCH12g0414 1426 SMART it6_source 1006 1422 IPR015425 -
HCH12g0414 1426 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
HCH12g0414 1426 Coils Coil 1383 1410 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 775 789 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 852 995 - -
HCH12g0414 1426 Coils Coil 1293 1313 - -
HCH12g0414 1426 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0414 K28090 - - csv:101214019 1843.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0414 HCH-Chr12:2400867 HCH8g1276 HCH-Chr8:47946284 6.90E-255 dispersed
HCH5g0222 HCH-Chr5:1265054 HCH12g0414 HCH-Chr12:2400867 2.50E-256 transposed
HCH12g0414 HCH-Chr12:2400867 HCH8g0927 HCH-Chr8:45586913 6.2e-312 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH5g0214 . 190 1011 FH2 protein (formin) Gene Family AT3G25500 53.1 1.9e-196 683.3
HCH1g0118 . 420 891 FH2 protein (formin) Gene Family AT3G25500 65.3 6.6e-162 568.5
HCH2g0022 . 429 864 FH2 protein (formin) Gene Family AT3G25500 60.4 3.6e-139 493.0
HCH8g0107 . 526 927 FH2 protein (formin) Gene Family AT3G25500 50.8 1.7e-104 377.9
HCH5g0214 . 537 1030 FH2 protein (formin) Gene Family AT2G43800 57.5 9.1e-144 508.1
HCH2g0022 . 441 880 FH2 protein (formin) Gene Family AT2G43800 54.7 7.2e-125 445.3
HCH2g0759 . 221 558 FH2 protein (formin) Gene Family AT4G15200 53.5 7.0e-63 238.4
HCH12g1149 . 479 629 FH2 protein (formin) Gene Family AT4G15200 63.8 2.0e-49 193.7
HCH2g0759 . 419 878 FH2 protein (formin) Gene Family AT5G54650 66.7 2.2e-166 583.2
HCH5g0214 . 585 986 FH2 protein (formin) Gene Family AT5G54650 50.8 3.0e-102 370.2
HCH2g0022 . 27 884 FH2 protein (formin) Gene Family AT5G67470 54.5 4.0e-208 721.8
HCH1g0118 . 442 910 FH2 protein (formin) Gene Family AT5G67470 58.7 6.6e-134 475.3
HCH5g0214 . 589 1030 FH2 protein (formin) Gene Family AT5G67470 60.7 3.6e-132 469.5
HCH1g0992 . 334 810 FH2 protein (formin) Gene Family AT1G59910 50.2 2.1e-119 427.2
HCH4g1640 . 271 666 FH2 protein (formin) Gene Family AT1G59910 50.5 3.0e-105 380.2
HCH1g0992 . 135 806 FH2 protein (formin) Gene Family AT1G70140 51.2 6.1e-141 498.4
HCH2g0022 . 429 840 FH2 protein (formin) Gene Family AT3G05470 50.2 1.3e-105 381.3
HCH5g0222 . 943 1254 FH2 protein (formin) Gene Family AT1G42980 50.8 4.2e-69 258.5
HCH5g0222 . 1 1261 FH2 protein (formin) Gene Family AT1G31810 66.2 0.0e+00 1221.8
HCH8g1276 . 1311 1632 FH2 protein (formin) Gene Family AT5G07650 75.5 4.6e-131 465.7
HCH12g0414 . 1089 1410 FH2 protein (formin) Gene Family AT5G07650 64.6 2.4e-111 400.2
HCH8g0927 . 840 1159 FH2 protein (formin) Gene Family AT5G07650 62.0 8.4e-109 391.7
HCH5g0222 . 927 1258 FH2 protein (formin) Gene Family AT5G07650 59.6 4.6e-107 386.0
HCH8g1276 . 1238 1625 FH2 protein (formin) Gene Family AT5G07770 69.4 6.2e-141 498.0
HCH12g0414 . 1013 1403 FH2 protein (formin) Gene Family AT5G07770 58.9 5.1e-119 425.2
HCH5g0222 . 863 1252 FH2 protein (formin) Gene Family AT5G07770 56.3 2.6e-115 412.9
HCH8g0927 . 763 1151 FH2 protein (formin) Gene Family AT5G07770 56.1 4.5e-115 412.1
HCH12g0414 . 1005 1410 FH2 protein (formin) Gene Family AT3G32400 77.8 5.2e-173 604.4
HCH8g0927 . 770 1160 FH2 protein (formin) Gene Family AT3G32400 68.9 1.3e-147 520.0
HCH5g0222 . 863 1257 FH2 protein (formin) Gene Family AT3G32400 65.5 1.4e-141 500.0
HCH8g1276 . 1238 1632 FH2 protein (formin) Gene Family AT3G32400 64.7 2.0e-140 496.1
HCH12g0414 . 1 1410 FH2 protein (formin) Gene Family AT2G25050 51.6 0.0e+00 1153.7
HCH8g0927 . 1 1160 FH2 protein (formin) Gene Family AT2G25050 53.5 7.4e-295 1010.4
HCH8g1275 . 1 378 FH2 protein (formin) Gene Family AT2G25050 57.5 1.6e-124 444.5
HCH8g1276 . 1239 1632 FH2 protein (formin) Gene Family AT5G07780 63.0 2.7e-123 439.1
HCH12g0414 . 1014 1404 FH2 protein (formin) Gene Family AT5G07780 54.8 4.3e-105 378.6
HCH8g0927 . 770 1159 FH2 protein (formin) Gene Family AT5G07780 53.3 1.3e-101 367.1
HCH5g0222 . 864 1253 FH2 protein (formin) Gene Family AT5G07780 52.2 1.1e-100 364.0
HCH8g1276 . 1 1641 FH2 protein (formin) Gene Family AT5G07740 62.7 0.0e+00 1124.4
HCH8g1275 . 1 416 FH2 protein (formin) Gene Family AT5G07740 68.3 8.4e-164 575.5
HCH8g1276 . 1310 1639 FH2 protein (formin) Gene Family AT5G07760 74.7 8.0e-129 458.4
HCH12g0414 . 1088 1410 FH2 protein (formin) Gene Family AT5G07760 65.4 3.4e-111 399.8
HCH8g0927 . 839 1159 FH2 protein (formin) Gene Family AT5G07760 64.1 6.4e-110 395.6
HCH5g0222 . 937 1258 FH2 protein (formin) Gene Family AT5G07760 60.7 2.8e-105 380.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004653 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 2 1 42