Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0414 ATGGCGTTGTTCCGGAAGTTCTTTTATCGGAAGCCGCCGGACGGGCTTCTGGAGATCTCTGAAAGGGTTTATGTTTTTGATTGCTGCTTTACCACGGAGGTTTTGGAAGAAGACGCTTATAAAGTCTATATTGGAGGCATTGTGGGTCAACTTCGTGAGCATCTTACTGACGCTTCATTCATGGTGTTCAATTTACGAGAGGGAGATAACCAAAGCCTGATTGCTAGTATATTATCCATGTATGATATGACTGTCATGGATTATCCTCGACATTACGAAGGCTGCCCTCTACTCACTATGGAGATGATTCACCATTTCTTGAGATCCAGTGAAAGCTGGCTCTCCCTTGGACAACAGAATGTACTTTTGATGCACTGTGAACGAGGGGGATGGCCAGTCTTGGCTTTCATGTTGGCTGCTCTTTTGATTTACAGGAAGCAGTACGTCGGGGAGCAGAAAACTTTGGACATGATTTACAAGCAAGCACCTCGGGAGCTTTTGCAGTTGATGTCGCCTCTTAATCCATTGCCTTCACAATTGAGGTATCTCCAATATGTTTCAAGAAGAAACGTGGGATCAGAATGGCCTCCACTTGATAGGGCACTTACTCTAGACTGCATAATAGTTAGATTTATTCCTAATATGGATGGGGAAGGTGGTTGCCGCCCAATATTTAGGATATATGGACAGGATCCTTTTATGGCTGCTGATCGAACTTCGAAAGTATTGTTCTCAACCCCTAAAAAGAGCAAACTTGTTCGCCAGTATAAGCAGGTAGAAAGTGAACTAGTTAAAATTGATATTGATTGCCATATCCAAGGCGATGTTGTTCTTGAATGTATAAGTTTGGACAATGATCTGGAAAGGGAGGAGATGATGTTTCGAGTCATGTTTAATACAGCTTTTATAAGATCGAACATTTTGATGCTTAATCGTGATGACATTGATATCCTATGGCATGCCAAGGATCGATTTCCTAAGGATTTTAGAGCAGAGGTGCTTTTCTCAGAGATGGATGCTGCTACATCACTTATTTCAATTGAATTGCCAAATATTGAGGAGAAAGATGGTCTTCCAGTTGAAGCATTTGCTAAAGTTCAAGAGATCTTTAGCAATGTGGACTGGCTTAGCCCAAAGGCAGATGCAGCTCTTAATGTGCTTCACAAAATAACTGCTTCAAATGTGCTTCAAGAGAAACTGGTTTGTTCTGCCAGCTTTTTAGAAAGAAACCAGTTGCTTGACTCTTCTTTTGAAAAACTAAGCTTCGAATCAGAGATATCTGAAGACAACATTAGAAGTCCTCAATCCAAGGTGCAAACAAGTCAATCTCAACTTTCAATTGAAGCGTCTCATGCTGCAAATTTGATAAGAGCAAAGATTGAGCCCCCGAGACTGCCGGTTGCCTTCCAACTACCACCCCAGTCTAAAATTATAACCCAACGGATGTCTCAAGCTTCCTTGTCTGCACCAGTCTCCTATCGTAGTTCTGGGCAACATACACCTCGCCCAATATTAAGATATCACAGTGCACCCTCTTCTCTTGGAATTACAGCTTTATTACATGATCATTCCAAATCTAGTGACAAAGAAGTCATACATACAGTGGCAGTGTCTTCACCATCATCTGCTCTGTCAGCTGTGAGTGTTTTAAGTTCACAGAAAGATATGCAACATAGTGAGTTTCCTATTTTGCCTCTCCCGCTGCCATTAGGGCCAAGTTCTACCTCAGAAAGTTCTCCAACCACCACGTGGACAACTTCAAATATTCCTAATCAGCCGTTGCTTCACCAACTTTCTTTGAAAACTGTAAATTCTTCAATTTCTCAACATTCTCAAACCACATCACCAGGTAGAAGTCAATCGTCCCCATTTTCACTTCAACCACCTACTCCTCTTCCTGGAAAATCTCTGCGCTCTTGCAATGAGAACTTGCCTTCCATACCCTCCTTTTCCCCTTCTTTCTCAGGATCATCTCCACCTTCCTCTTTTGAAAATTTATTTTCTGTTCCCACCCCTCCCCCACCATCTTCTCTTGATTCACCTTCCTTCTTGGTAACATCTTTATCTTCTATGTTGACGAATTCTTCATTTCCCTCATCTCTGCCACAACCTTTTCCTACCTCAGTACTATTATCCTCCCCAAAGACATCAATATCAGTAGTCCCTCAACCTTCTCCACCCTGTAGTATTCCTTCATCAAATGATCGTTTGGGTTCTTCTCAGTCACCTAAAAAGAACTCGATAGTTGTGCCCAGCCCTCCTCCTCCTCCTCCTCCAACTCCTCCAAGTTTTAAATCTAACTCTGGTCCTAGTGTTGTATCCTTAACATCAATGCCACCACCCCCACCCCCGCCTCCCCATTTTTCATCGAATGACTCTAAAATGACTGTTGAAAAGTTGACAGGTATGCACGATCCTCCTCATCCACCACCGCCTCCACCTTTTTTGAGTTCTAGATCTACCCTTGGTCTAAGTATTGTGTCTTCAGTGCCTCTGCCTCCACCCCCTCCTAGTTTTGCATCAAAGGATTCAGCAATGATAGTTAAGAACTTGACAGTCATATCTGGCCCTCCTCCTCCTCCTCCTCTACCCCCACCTTCTCTTATTTCTAGATCAACCCTAGGTCCTAGTGTTGTGCCTTCTGTGCCTCCACCTCCCCCTCCTCCTAGTCTTGCACCAAAGGATTCTGCCATAACAATGAAGAACTTGACAGGTGTGTGTAGCCCCCAACCTCCTCCTCCTCCTCCTCCTCCACTTTTTGCAAAATCTAGAACTACCTTATGTCCTAGTGTTGTATCATCAACTCCACCACCACCACCACCTCCAGGTTTTTCAATGAAGGATTCTGCAGTAAATAAAAATGCACATACTCCTCCTGCACCCCCTCCTCCCGCCCTTAGTGGTAATAAAATCTCAAAAGTCAATGGTACTAGTAATGGAAACATTCCTTCTATTCCTGGGCCACCTTCCAGTGCTCTCTTCAATGCAAAGGAACGGGGCCATGGACGTATGAGCCTGAAAAACCAGTCTCAACCTAAAAAGACCAATTTGAAGCCTTATCACTGGTTAAAGCTAACGAGAGCCATGCAGGGAAGCTTATGGGCAGAGGCACAAAAGACTGATGAAGCCTCCAAAGCTCCGGAGTTTGACATGTCCGAACTTGAAAGTCTTTTCTCTACAGTTGCACCTAATTCAGATCGTGGAAATTCTGGTGGAAATTCAAATCGCCGTGCCTCAGGGCCAAAATCGGACAAAGTTCATTTGATTGAACTTCGACGGGCGTATAATTGTGAAATTATGCTTTCTAAAGTTAAGATTCCTTTGCCTGATATGATGAGTTCTGTCCTGGCCTTGGATGAGTCGGCATTAGATGTGGATCAGGTTGAGAACCTAATAAAGTTTTGTCCAACAAAAGAAGAAATGGAACTACTTAAGGGTTACGGTGGGGATAAGGACAACTTGGGAAAATGTGAACAATTCTTTCTAGAATTGATGAAAGTGCCGCGAGTAGAATCCAAGCTAAGGGTTTTTTCTTTCAAGATACAATTCCATTCACAGGTCTCTGACCTCAGAAATAGTCTGAATACTATCAATTCGGCATCAGAAGAGACCAGAGGTTCGGTGAAGTTGAAAAGGGTAATGCAAACTATTCTTTCTTTGGGCAATGCTTTGAACCATGGAACGGCTAGAGGTTCTGCTATCGGATTTCGGCTTGATAGTCTTCTCAAACTCACCGATACACGGGCAAGAAACAACAAGATGACTCTCATGCATTATCTATGTAAGGTGCTTGCTGAAAAGCTTCCAGAACTTTTAGTTTTTCCAAAAGACCTTGTGAGTTTGGAAGCTTCTACGAAGATACAACTGAAATATTTAGCTGAGGAAATGCAAGCCATTAGCAAAGGGCTTGAGAAGGTTGTTCAGGAATTGACTAATTCAGAAAATGATGGCCCTGTTTCAGAAATCTTTTGCAGGACTCTAAAGGACTTCCTTTCTCATGCTGAGGCTGAAGTGAGGTCTTTGGCCTCACTTTATTCTAATGTGGGTAGAAATGCCGATGCACTGGCTCTTTATTTTGGGGAGGATCCAGCCCGTTGCCCTTTTGAGCAAGTTGTATCAACTCTATTCAATTTTGTGCGGATGTTTGTTCGAGCGCATGACGAAAACTATAAGCAACTTGAATTCGAAAAGAAGAAAGCAAAGAAGGAAGCCGAAAAGGAGAAGTTGAAGGTCAGTACTCCGAAACAGGAGTCTAAATTCTTGATGCAGACTCCAATGTAG 4281 43.07 MALFRKFFYRKPPDGLLEISERVYVFDCCFTTEVLEEDAYKVYIGGIVGQLREHLTDASFMVFNLREGDNQSLIASILSMYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLGQQNVLLMHCERGGWPVLAFMLAALLIYRKQYVGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYVSRRNVGSEWPPLDRALTLDCIIVRFIPNMDGEGGCRPIFRIYGQDPFMAADRTSKVLFSTPKKSKLVRQYKQVESELVKIDIDCHIQGDVVLECISLDNDLEREEMMFRVMFNTAFIRSNILMLNRDDIDILWHAKDRFPKDFRAEVLFSEMDAATSLISIELPNIEEKDGLPVEAFAKVQEIFSNVDWLSPKADAALNVLHKITASNVLQEKLVCSASFLERNQLLDSSFEKLSFESEISEDNIRSPQSKVQTSQSQLSIEASHAANLIRAKIEPPRLPVAFQLPPQSKIITQRMSQASLSAPVSYRSSGQHTPRPILRYHSAPSSLGITALLHDHSKSSDKEVIHTVAVSSPSSALSAVSVLSSQKDMQHSEFPILPLPLPLGPSSTSESSPTTTWTTSNIPNQPLLHQLSLKTVNSSISQHSQTTSPGRSQSSPFSLQPPTPLPGKSLRSCNENLPSIPSFSPSFSGSSPPSSFENLFSVPTPPPPSSLDSPSFLVTSLSSMLTNSSFPSSLPQPFPTSVLLSSPKTSISVVPQPSPPCSIPSSNDRLGSSQSPKKNSIVVPSPPPPPPPTPPSFKSNSGPSVVSLTSMPPPPPPPPHFSSNDSKMTVEKLTGMHDPPHPPPPPPFLSSRSTLGLSIVSSVPLPPPPPSFASKDSAMIVKNLTVISGPPPPPPLPPPSLISRSTLGPSVVPSVPPPPPPPSLAPKDSAITMKNLTGVCSPQPPPPPPPPLFAKSRTTLCPSVVSSTPPPPPPPGFSMKDSAVNKNAHTPPAPPPPALSGNKISKVNGTSNGNIPSIPGPPSSALFNAKERGHGRMSLKNQSQPKKTNLKPYHWLKLTRAMQGSLWAEAQKTDEASKAPEFDMSELESLFSTVAPNSDRGNSGGNSNRRASGPKSDKVHLIELRRAYNCEIMLSKVKIPLPDMMSSVLALDESALDVDQVENLIKFCPTKEEMELLKGYGGDKDNLGKCEQFFLELMKVPRVESKLRVFSFKIQFHSQVSDLRNSLNTINSASEETRGSVKLKRVMQTILSLGNALNHGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLVFPKDLVSLEASTKIQLKYLAEEMQAISKGLEKVVQELTNSENDGPVSEIFCRTLKDFLSHAEAEVRSLASLYSNVGRNADALALYFGEDPARCPFEQVVSTLFNFVRMFVRAHDENYKQLEFEKKKAKKEAEKEKLKVSTPKQESKFLMQTPM 1426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2400867 2411097 - evm.model.ptg000002l.1245 HCH12g0414 555261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0414 1426 Gene3D Protein tyrosine phosphatase superfamily 14 191 IPR029021 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 1060 1083 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 878 893 - -
HCH12g0414 1426 SMART PTEN_C2_2 197 337 IPR014020 -
HCH12g0414 1426 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 603 625 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 854 869 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 562 591 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 970 988 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 661 680 - -
HCH12g0414 1426 SUPERFAMILY Formin homology 2 domain (FH2 domain) 937 1402 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 730 747 - -
HCH12g0414 1426 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1007 1408 IPR015425 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 1060 1079 - -
HCH12g0414 1426 Gene3D - 196 341 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 907 922 - -
HCH12g0414 1426 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
HCH12g0414 1426 Gene3D Formin, FH2 domain 1001 1393 IPR042201 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 1401 1426 - -
HCH12g0414 1426 PANTHER FORMIN-J 1 1408 IPR051144 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 748 765 - -
HCH12g0414 1426 Pfam Formin Homology 2 Domain 1009 1382 IPR015425 -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 571 591 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 717 820 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 603 643 - -
HCH12g0414 1426 SMART it6_source 1006 1422 IPR015425 -
HCH12g0414 1426 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
HCH12g0414 1426 Coils Coil 1383 1410 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 775 789 - -
HCH12g0414 1426 MobiDBLite consensus disorder prediction 852 995 - -
HCH12g0414 1426 Coils Coil 1293 1313 - -
HCH12g0414 1426 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0414 HCH-Chr12:2400867 HCH8g1276 HCH-Chr8:47946284 6.90E-255 dispersed
HCH5g0222 HCH-Chr5:1265054 HCH12g0414 HCH-Chr12:2400867 2.50E-256 transposed
HCH12g0414 HCH-Chr12:2400867 HCH8g0927 HCH-Chr8:45586913 6.2e-312 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0414 K28090 - csv:101214019 1843.55