Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0426 ATGGGTATATACCTCAGCAGTCCCAAAACTGAAAAGTTTTCTGAAGATGGTGAGAGTGATAGGCTTAAATATGGTCTATCATCGATGCAAGGATGGCGTGCCACAATGGAAGATGCTCATGCTGCATATCCTAGTTTGGATTCCTGCACTTCCTTCTTTGGTGTTTACGATGGCCATGGAGGTAAGGTGGTTGCAAAGTTCTGTGCCAAGTATCTTCACCAACAAGTGATGAAAAATGAAGCTTATGTGGCGGGAGATATTGAAACTTCTGTGCAGAAAGCATTTTTCAGAATGGATGAAATGATGCGTGGACAAAGAGGTTGGAGAGAATTAGCCGTTTTGGGTGATAGAATAAACAAGTTCACTGGCATGATTGAAGGGTTGATATGGTCACCGAGAAGCAGTGATGCAAATTACCAGGCTGATGATTGGGCTTTTGAGGAGGGTCCACACTCTGATTTTACGGGCCCAACTTCAGGATGTACAGCTTGTGTTGCAATTCTTAGAAATAGCAAACTCGTTGTTGCAAATGCAGGCGATTCTCGTTGTGTGATATCAAGAAAGGGTCAGGCTCACAACCTCTCTAGAGATCACAAGCCTGATCTTGAAGTTGAGAGGGAAAGAATTCTGAAAGCTGGGGGTTTTATTCATGCCGGGCGAGTCAATGGTAGCTTGAACCTTGCCAGAGCAATTGGTGATATGGAATTTAAGCAGAATAAATTTTTACCTGCTGAAAAGCAAATTGTCACTGCAAATCCTGATGTAATCACTGTTGAGCTTTGTGATGACGACGATTTTATTGTTCTAGCATGCGATGGCATATGGGATTGCATGTCTAGCCAGCAACTGGTAGATTTTATACATGAACAGCTGAAATCAGAAAGTAAACTCTCTGCAGTTTGTGAGAGAGTACTTGATAGGTGTTTGGCACCTTCCACAGCTGGTGAGGGATGTGATAACATGACAATGATCTTGGTGCAGTTTAAGAAACCCATCCAATCGAACAACATCGGTGCTAATGAGCAATCTTCACCGTCCGCCAATCCGGAAAATACTGATACAAAGCAAGCCGATGAGTCGAACCAGTGA 1089 43.16 MGIYLSSPKTEKFSEDGESDRLKYGLSSMQGWRATMEDAHAAYPSLDSCTSFFGVYDGHGGKVVAKFCAKYLHQQVMKNEAYVAGDIETSVQKAFFRMDEMMRGQRGWRELAVLGDRINKFTGMIEGLIWSPRSSDANYQADDWAFEEGPHSDFTGPTSGCTACVAILRNSKLVVANAGDSRCVISRKGQAHNLSRDHKPDLEVERERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDVITVELCDDDDFIVLACDGIWDCMSSQQLVDFIHEQLKSESKLSAVCERVLDRCLAPSTAGEGCDNMTMILVQFKKPIQSNNIGANEQSSPSANPENTDTKQADESNQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2465023 2469920 - evm.model.ptg000002l.1233 HCH12g0426 555273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0426 362 SMART PP2C_SIG_2 28 328 IPR001932 -
HCH12g0426 362 CDD PP2Cc 23 328 IPR001932 -
HCH12g0426 362 SUPERFAMILY PP2C-like 3 329 IPR036457 -
HCH12g0426 362 MobiDBLite consensus disorder prediction 335 362 - -
HCH12g0426 362 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169(InterPro)
HCH12g0426 362 PANTHER PROTEIN PHOSPHATASE 2C 19 329 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
HCH12g0426 362 Gene3D - 1 329 IPR036457 -
HCH12g0426 362 Pfam Protein phosphatase 2C 23 104 IPR001932 -
HCH12g0426 362 Pfam Protein phosphatase 2C 136 314 IPR001932 -
HCH12g0426 362 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
HCH12g0426 362 SMART PP2C_4 11 326 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0426 HCH-Chr12:2465023 HCH4g1111 HCH-Chr4:7273095 9.30E-31 dispersed
HCH12g0048 HCH-Chr12:251006 HCH12g0426 HCH-Chr12:2465023 2.60E-31 transposed
HCH12g0426 HCH-Chr12:2465023 HCH4g1258 HCH-Chr4:8649790 5.30E-167 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0426 K17499 - mdm:103442179 627.476