Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g0427 | ATGATGAAAAACGAAGCTTATGGAGATGTTGGAACTTCTGTGAAGAAATCATTTTCCAGAATACTTACTATATTGACTCCTGAAAATTTTGATGTTCTCAAGGATCAACTGATTGACTCTAGAATTACATCCCCTTATATTTTAATGGATGTGGTATCACTTATATATGAGAAGGCTGTGTGTGAACCCAGATTCTGTCCCATGTATGCACTTTTGTGCTCATTCCTTAGTTGGAACCTTCCTTCAATCCCATCTTATGAGCCCGGTGATAAAGATATCACGTTTAAACGACTCCTTATAAATCTCTGCCAACAGGAATTTGAAAGTAATTTCCTTGTGAAGACAAAAATCAGGCAGATGGCTAATCCGGAGCATGAAATGGAAATAAGGGACAAAGAAATAATGGTTAAGCTACGAGCTCTAGGAAACATACGCCTGATAGGTGAGCTTTTTAAACAGAAAATGTTGCCTGAGAGGATTGCTCACGAAATTGTCAAGGAGCTTTTGGGATCTGATGATATTAATGCATGCCCTGCTGAGAAGAATGTTGAGGCTATCTGTCAATTTTTTAACACAATTGGCGAGCGGCTCGATGAGAACCCAAAATCTCGGCAATGGAATGATGTGTATTTCAATACGTTGAAGGAACTTACTACAAACACCCAATTAGAACCAAGGTTGAGAATTATGGTCCGTGATGTTCTTGATTTACGGGCCAATAACTGGGTTCCTACCCCAGAAGAGGATGAGTTTGAGAAAACTATGTCGGGAATAACGAGATTTGTGACTGAAGTTATGTCGAAGTATAACGACCAGATGAGTTTGAAGTTGGACGAAGAGAAGAGAAAGAATAGAATGCTTAAAATTACAATTGTGTTATTACTTTTTGCTTGCATATGGTGTATTATGCGATGA | 915 | 38.36 | MMKNEAYGDVGTSVKKSFSRILTILTPENFDVLKDQLIDSRITSPYILMDVVSLIYEKAVCEPRFCPMYALLCSFLSWNLPSIPSYEPGDKDITFKRLLINLCQQEFESNFLVKTKIRQMANPEHEMEIRDKEIMVKLRALGNIRLIGELFKQKMLPERIAHEIVKELLGSDDINACPAEKNVEAICQFFNTIGERLDENPKSRQWNDVYFNTLKELTTNTQLEPRLRIMVRDVLDLRANNWVPTPEEDEFEKTMSGITRFVTEVMSKYNDQMSLKLDEEKRKNRMLKITIVLLLFACIWCIMR | 304 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2472210 | 2474175 | - | evm.model.ptg000002l.1232 | HCH12g0427 | 555274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g0427 | 304 | Gene3D | - | 11 | 243 | - | - | |
| HCH12g0427 | 304 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA | 15 | 266 | IPR045208 | GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER) | |
| HCH12g0427 | 304 | Pfam | MIF4G domain | 19 | 241 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) | |
| HCH12g0427 | 304 | SUPERFAMILY | ARM repeat | 14 | 244 | IPR016024 | - | |
| HCH12g0427 | 304 | SMART | if4_15 | 15 | 241 | IPR003890 | GO:0003723(InterPro)|GO:0005515(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0427 | HCH-Chr12:2472210 | HCH6g1375 | HCH-Chr6:47686395 | 2.40E-43 | dispersed | |
| HCH12g0427 | HCH-Chr12:2472210 | HCH12g0428 | HCH-Chr12:2475472 | 1.00E-91 | tandem | |
| HCH12g0427 | HCH-Chr12:2472210 | HCH8g0947 | HCH-Chr8:45684931 | 1.40E-80 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g0427 | K03260 | - | gmx:100781275 | 310.842 |