Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0428 ATGCAGGCAGATCAGACGGTGATAAGTTTGAGACCAGGTGGTGGCGGTGGTCTTCGTGGTACCAGATTTGTTTCCCCGAGATTCGATTCTTCTTCCTCTGATTCTTCCTCTCTTCGTCCTCATGGCGCCGCCGTTTCTATTTTTAAGACTGGAGATATACGGTTTGAAGGTCATGAGCGTGTCCAATACACTCAAGACCAGCTTCTGCAACTTAGGGAGGTTACTACTGTCCCTGAGGATATCTTGAGGATCAAGCTAGAAGTTGAGGCTGAGTTTTCTGTGGAGGATCAATCTTGGGCTCGTGCAGAGAGCAATCCGCAAACGCAATCCCAATCCCAAAGCCGTTATTTTGAGCCAGATACTCGAGATTGGCGTGGTCGATCTGGACAGTTACCTGGCTCTGGGGAGGAAGGATCTTGGGAAGCAAATCGCGAGAATAAGGATCAATCAGGGCTATCTGAGTCGAGGTTGCAAGACTTGAATAACAGGACTCAAATATCTGGTAACCAAGGGGTGGGTACTGCACCTGCTCTCACCAAGGCTGAAGTCCCTTGGTCTGTTAGAAGAGGTAATATCTCAGACAAGGATCGTGTTTTGAAGACAGTAAAAGGTATACTCAATAAATTGACTCCTGAAAAGTTTGATGTTCTCAAGGGTCAACTGATTGACTCTGGGCTGACAACCCCTGATATTTTAAAGGATGTTATGTCACTTATATTTGAGAAGGCTGTGTTTGAACCCACATTTTGTCACATGTATGCACTTTTGTGCTCTGACCTTAATGAGAACCTTCCTCCATTCCCATCTGATGTGCCCGGTGGGAAAGAAATCACATTTAAACGAGTCCTCTTAAATAATTGCCAAGAGGCATTTGAAGGTTCTGACAACCTGAGGACAGAAATCAGGCAGATGACTGGTCCGGAGCATGAAACGGAAAGAAGGGACAAAGAAAGAATGGTTAAGCTTCGAACTCTAGGAAACATGCGCCTGATAGGTGAGCTTCTTAAACAGAAAATGGTGCCTGAAAAGATTGTTCACCATATTGTTAAGGAACTTTTGGGATCTGATGTTAAAGCATGCCCTGCTGAGGAGAATGTTGAAGCTATCTGTCAATTTTTCAACACAATTGGCAAGCAGCTGGATGAGAGCCCAAAATCTAGGCGAGTGAATGATATGTATTTCAATACGTTGAAGGAGCTTACTACAAACACCCAATTAGAACCAAGGCTGAGATTTATGGTTCGTGATGTTCTTGATTTACGGGCCAACAACTGGGTTCCTAGACGTGAAGAGGTGAAAGCAAAGACCATCACTGAAATCCATTCAGAGGCTGAGAAGAATTTAGGACTCCGTCCAGGTTCCATGGCAATGATGAGAAATGGTCGAAATGCTGAGGCACTTGGGGGGATGGGTACCAGACCTGGCTTTGGGGGTATGCCAGGATTGCCTGGAAACAGGAAAATGCCTGGTATGCCTGGACTTGATTCTGACAATTGGGAGGTTCCTAGATCCCGGGCACTGCCAAGGGGTGAGGGTATAAGTCAGGCTTTTGGGCGTGTCCATTCACCATTAATAAGCAAAACGCCTTCTGTTAACTCAAAAATTTTGCCTCAGGGAAGTGGGGGTGTCATAACTGGGAAAACAAGTGCGTTGTTGCAGGGTAGTGTTGCTTCTCCTGCCCGACCTAGTTCTATATCTGGAGTCCAGCCTATGACTTACAACCCTAGGCCAGTTGCCCCAATTGCATCAGCCATGCCCTCTCCTCAGAAGCCTGCAGCTCCTCCTGTAGTATCTAATTCTGCTGATCTTCGCAAGAAAACTGTTTCACTGCTTGAGGAATACTTCAGTGTACGAATTCTTGATGAAGCTCTACAGTGTGTGGAGGAACTGAAAGCTCCAGCCTACCACCCAGAGGTGGTTAAAGAAGCTTTCATCGTAGCACTTGAAAAGATACCACCATGTGTAGAGCCAGTTGTTAAGCTCCTCGAGCACTTGCTTCGCAAGGATGTTCTGACTGCAAGGGATATTGGAACTGGGTGCCTTCTATACGGGTCAATGTTGGATGATATTGGTATTGATCTACCAAAAGCTCCAAATAATTTTGGTGAGATTCTTGGAAAGTTGGTTTTGATTGGGGGTTTGGATTTCACAGTTGTGAAGGAAGTTCTTAAGAAGGTGGAAGATAACAGTTATCAGAAAGTCATCTTTGGTGGTGCTATGAAGAGTCTTAATTCCAGCCCTTCTGGAGAAGGGATTCTGGCAAATCAGAGCGTCGAGATCCAAGCTTGTGAGAATTTACTTGCGTGA 2307 45.56 MQADQTVISLRPGGGGGLRGTRFVSPRFDSSSSDSSSLRPHGAAVSIFKTGDIRFEGHERVQYTQDQLLQLREVTTVPEDILRIKLEVEAEFSVEDQSWARAESNPQTQSQSQSRYFEPDTRDWRGRSGQLPGSGEEGSWEANRENKDQSGLSESRLQDLNNRTQISGNQGVGTAPALTKAEVPWSVRRGNISDKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGLTTPDILKDVMSLIFEKAVFEPTFCHMYALLCSDLNENLPPFPSDVPGGKEITFKRVLLNNCQEAFEGSDNLRTEIRQMTGPEHETERRDKERMVKLRTLGNMRLIGELLKQKMVPEKIVHHIVKELLGSDVKACPAEENVEAICQFFNTIGKQLDESPKSRRVNDMYFNTLKELTTNTQLEPRLRFMVRDVLDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSMAMMRNGRNAEALGGMGTRPGFGGMPGLPGNRKMPGMPGLDSDNWEVPRSRALPRGEGISQAFGRVHSPLISKTPSVNSKILPQGSGGVITGKTSALLQGSVASPARPSSISGVQPMTYNPRPVAPIASAMPSPQKPAAPPVVSNSADLRKKTVSLLEEYFSVRILDEALQCVEELKAPAYHPEVVKEAFIVALEKIPPCVEPVVKLLEHLLRKDVLTARDIGTGCLLYGSMLDDIGIDLPKAPNNFGEILGKLVLIGGLDFTVVKEVLKKVEDNSYQKVIFGGAMKSLNSSPSGEGILANQSVEIQACENLLA 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2475472 2479712 - evm.model.ptg000002l.1231 HCH12g0428 555275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0428 768 Gene3D - 598 757 - -
HCH12g0428 768 SUPERFAMILY ARM repeat 192 427 IPR016024 -
HCH12g0428 768 Pfam MA3 domain 603 714 IPR003891 -
HCH12g0428 768 Pfam MIF4G domain 199 424 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH12g0428 768 MobiDBLite consensus disorder prediction 1 20 - -
HCH12g0428 768 MobiDBLite consensus disorder prediction 99 117 - -
HCH12g0428 768 SUPERFAMILY ARM repeat 600 755 IPR016024 -
HCH12g0428 768 Gene3D - 190 425 - -
HCH12g0428 768 MobiDBLite consensus disorder prediction 99 153 - -
HCH12g0428 768 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 42 765 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
HCH12g0428 768 FunFam Eukaryotic translation initiation factor isoform 4G-2 190 425 - -
HCH12g0428 768 SMART if4_15 199 424 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH12g0428 768 ProSiteProfiles MI domain profile. 602 724 IPR003891 -
HCH12g0428 768 SMART ma3_7 603 715 IPR003891 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0428 HCH-Chr12:2475472 HCH8g0947 HCH-Chr8:45684931 5.60E-259 dispersed
HCH12g0427 HCH-Chr12:2472210 HCH12g0428 HCH-Chr12:2475472 1.00E-91 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0428 K03260 - csv:101211356 1179.08