Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0437 ATGGAGAAAAAACAATCTTCTTCTTCTTCTTCTTCAGTATCAAATCATGAGAATATATTGTGTCAAAAGTACTTGTCGGTTCTGGTTTTAGTATTATTCGGAGTTGCCGCTGTTTCTTCATCCTCGGCTACTGCTTTGTCTTTCAATTCCTACGCCGCCACGTGTCCTGCTGCTGAGTTTCTGGTCAGAAATACAGTTAGATCGGCTTCGGCCGTTGACCCGACCATTCCCGGAAAGCTCCTTCGTTTACTCTTCCATGATTGCTTTGTCCAGGGCTGTGACGCATCTGTCCTTCTCCAAGGAAACGGAACAGAACGAACTGATCCAGGAAACAAATCACTCGGAGGATTTGAAGTAATCGATTCAGCCAAGAGAGCTCTCGAGTTTTTCTGTCCGGGAACAGTTTCCTGCGCCGATATCATCGTTTTAGCTGCTAGAGATGCCGTTGAATTCGCCGGCGGTCCTTCAGTTCAGGTTCCGACAGGTCGTAGAGACGGCAAAATTTCAGCAGCTTCAAACGTCCGACCAAACATCGTAGACACAAGCTTCACAGTCGATGAAATGCTAAATCTCTTTTCCTCTAAAGGGTTATCGGTGGACGATCTCGTCGTACTTTCCGGCGCTCATACCATCGGAACGGCTCATTGCAGCGCCTTCAGCGATCGCTTCAGGCGAAACCCAGATGGGAATTTGACGCTCGTCGATGCCTCACTCGACGGTGCTTATGCCGACGAGTTAATGCGGCGGTGCCCGGCCGGTGCCGGCCCGTCAGTTACGGTCGATAATGATCCCATAACATCGTTTGTTTTTGACAATCAGTATTATAGAAATATTTTGTCGCGTAGAGGGCTGCTTCAGTCCGATTCCGTTCTTTTAAAAGACAGAAGGACGATGGCTCAGGTGGAGAGCCTGGCGAATGATCAGATTGGGTTTTTTGAGAGGTGGGCTCAATCGTTCTTGAAACTCAGTGGTATCGGAGTCAAAGGTGGCGATGTGGGAGAGATTAGATTGTCTTGTTCTGCTACAAATATTGTTTGA 1038 47.88 MEKKQSSSSSSSVSNHENILCQKYLSVLVLVLFGVAAVSSSSATALSFNSYAATCPAAEFLVRNTVRSASAVDPTIPGKLLRLLFHDCFVQGCDASVLLQGNGTERTDPGNKSLGGFEVIDSAKRALEFFCPGTVSCADIIVLAARDAVEFAGGPSVQVPTGRRDGKISAASNVRPNIVDTSFTVDEMLNLFSSKGLSVDDLVVLSGAHTIGTAHCSAFSDRFRRNPDGNLTLVDASLDGAYADELMRRCPAGAGPSVTVDNDPITSFVFDNQYYRNILSRRGLLQSDSVLLKDRRTMAQVESLANDQIGFFERWAQSFLKLSGIGVKGGDVGEIRLSCSATNIV 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2517565 2520104 + evm.model.ptg000002l.1222 HCH12g0437 555284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0437 345 CDD secretory_peroxidase 46 342 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH12g0437 345 SUPERFAMILY Heme-dependent peroxidases 46 343 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 FunFam Peroxidase 49 190 - -
HCH12g0437 345 PRINTS Plant peroxidase signature 115 128 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Plant peroxidase signature 134 144 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Plant peroxidase signature 55 74 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Plant peroxidase signature 79 99 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Plant peroxidase signature 277 294 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Plant peroxidase signature 200 212 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Plant peroxidase signature 153 168 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Plant peroxidase signature 261 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Plant peroxidase signature 317 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 Pfam Peroxidase 62 307 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 Gene3D - 51 343 - -
HCH12g0437 345 PANTHER - 30 342 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 ProSitePatterns Peroxidases proximal heme-ligand signature. 201 211 IPR019793 -
HCH12g0437 345 PRINTS Haem peroxidase superfamily signature 153 165 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Haem peroxidase superfamily signature 201 216 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Haem peroxidase superfamily signature 263 278 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Haem peroxidase superfamily signature 77 91 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 PRINTS Haem peroxidase superfamily signature 135 152 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 Gene3D Peroxidase, domain 2 179 322 - -
HCH12g0437 345 ProSiteProfiles Plant heme peroxidase family profile. 45 343 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH12g0437 345 FunFam Peroxidase 179 322 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0437 HCH-Chr12:2517565 HCH13g0941 HCH-Chr13:12695733 5.50E-65 dispersed
HCH12g0437 HCH-Chr12:2517565 HCH14g0676 HCH-Chr14:35297952 8.80E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0437 K00430 - csv:101211842 518.85