Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0438 ATGATCATGGCGGACGATTTGATAATAACGGAAATCGACGAAACGGCAAATCGTCTTGGAATAGATCTTTCGAAACTCGATCTCGATTCCATTCATCTCCCTCCCGGCGAGGATTTCGGAATCATTAGCGATGATGAAGCGTTTCTTCAAGAGGACAGTCTAGAGTACGAATCTGGGTTTGGAAATATCATAATTGTCGATAATCTTCCTGTTGTTCCTCCGGAGAAGATTGAGAAACTCGAAGGTGTTATTCGTAAAATTTTCGGTCAGGTCGGCGGAATTAAGGATGGTGGCCTGTGGATGCCTCTTGATCCAAATACACATAAAACTTTAGGTTATTGCTTTATTGAGTACAATTCCCCACAGGAGGCTGTGCTTGCTAAAGAGAAGATTGATGGGTATAAGCTGGATAAATCCCATATCTTCATTGTCGACATGTTTGAGGACTTTGACAGATTTATGAAAGTTCCAGATGAGTGGGCCCCTCCTGAAACTGTTCCGTATGTTCCTGGGGAAAATCTTCACGAGTGGCTTATTGACGAGAAAGCAAGGGATCAGTTTGTTATTCGTTCTGGCTCTGATACAGAGGTCTTTTGGAATGATGCTAGACATTTGAAACCTGAGCCTGTTTACAAGCGTACATTCTGGACTGATAGTTTTGTGCAATGGTCCCCCTTGGGGACTTACTTAGCAACAGTGCACCGACAGGGAGCCGCAGTTTGGGGTGGGGCAAGTGGTTTTGAACGTCTAATGCGCTTTGCTCATCAACAGGTTAAATTAATCGACTTTTCTCCTGGTGAGAAATATCTGGTAACTTACAGCAGCCATGAGCCAAGCAATCCTCGTGATACAAATAGAATCGTGATTAATATTTTTGATGTGAAAACTGGAAAAGTGATGAGAGACTTTAAAGGAAGTCCTGATGATTTTTCAGTTGGAACTGGTGGTGTTGCTGGGGTACCTTGGCCTGTTTTCAGGTGGGGTGGTGGAAAAGACGATCAATACTTTGCCAGGATTGGGAAAAATGTGATCTCTGTCTATGAAACAGATACGTTCTCACTTATTGACAAGAAATCTTTGAAGGTTGAAAATGTTATAGATTTCTGCTGGTCCCCTACAGATCCCATTTTTGCACTCTACGTTCCTGAGCTAGGTGGAGGGAACCAGCCAGCTAGGGTGAGTCTTGTTCAAATTCCCAGTAAGGAGGAGTTGAGACAGAAAAATCTTTTCAGTGTTAGTGATTGCAAGATGTACTGGCAAAGCAATGGGGATTATCTTGCTGTCAAGGTTGATAGATACACAAAGACAAAAAAAAGCACATACACAGGATTCGAGCTTTTCCGTATTAAAGAACGGGACATCCCTATTGAGGTCCTGGAGCTTGAGAATAAGAATGACAAGATCATTGCCTTTGCCTGGGAGCCAAAGGGCCACAGGTTTGCAGTAATTCATGGTGATAACCCAAGGCCAGATATAAGTTTTTACTCAATGCGAAGTGCTCAGAACATTGGTCGTGTATCAAAACTTACCACTCTCAAAGGCAAGCAGGCCAATGCTCTTTTCTGGTCACCTGCTGGTCGCTTCATTATTCTTGCCGGACTGAAAGGTTTCAATGGACAATTGGAATTTTATAATGTTGATGAGCTTGAGACCATGGCAACAGCTGAGCATTTCATGGCTACTGATATTGAATGGGATCCTACTGGGAGGTATGTTGCAACTGCTGTAACTTCAGTTCATGAGATGGAAAACGGCTTCAACATATGGTCCTTCCATGGAAAGCTCCTCTATCGAATACTGAAGGATCATTTCTTCCAGTTTGTATGGCGGCCAAGGCCACCATCGCTCTTGAGTCCCGAGAAAGAGGAGGAAATTGCAAAGAATTTGAAGAAGTACAGCAAGAAGTACGAGGCCGAAGACCAGGATGTATCTATGCTATTGAGCGAGCAGGATCGCGAGAAACGGAGAATGTTGAAGGATGAATGGGACAAGTGGGTGAATGAATGGAAGAGATTGCACGAGGAAGAGAAATTGTTGAGGCAGAAACTGAGAGATGGAGAAGCCAGTGATGAAGAAGAGGAATATGAAGCAAAAGAGGTTGAAGTGGAGGAGACTTTGGATGTAACAGAGGAAGTCCTGCCCTTTGATTTCGAGCAGGAGTGA 2163 43.6 MIMADDLIITEIDETANRLGIDLSKLDLDSIHLPPGEDFGIISDDEAFLQEDSLEYESGFGNIIIVDNLPVVPPEKIEKLEGVIRKIFGQVGGIKDGGLWMPLDPNTHKTLGYCFIEYNSPQEAVLAKEKIDGYKLDKSHIFIVDMFEDFDRFMKVPDEWAPPETVPYVPGENLHEWLIDEKARDQFVIRSGSDTEVFWNDARHLKPEPVYKRTFWTDSFVQWSPLGTYLATVHRQGAAVWGGASGFERLMRFAHQQVKLIDFSPGEKYLVTYSSHEPSNPRDTNRIVINIFDVKTGKVMRDFKGSPDDFSVGTGGVAGVPWPVFRWGGGKDDQYFARIGKNVISVYETDTFSLIDKKSLKVENVIDFCWSPTDPIFALYVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAVIHGDNPRPDISFYSMRSAQNIGRVSKLTTLKGKQANALFWSPAGRFIILAGLKGFNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFHGKLLYRILKDHFFQFVWRPRPPSLLSPEKEEEIAKNLKKYSKKYEAEDQDVSMLLSEQDREKRRMLKDEWDKWVNEWKRLHEEEKLLRQKLRDGEASDEEEEYEAKEVEVEETLDVTEEVLPFDFEQE 720
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2522117 2525899 + evm.model.ptg000002l.1221 HCH12g0438 555285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0438 720 FunFam Eukaryotic translation initiation factor 3 subunit B 412 627 - -
HCH12g0438 720 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 149 IPR000504 GO:0003723(InterPro)
HCH12g0438 720 FunFam Eukaryotic translation initiation factor 3 subunit B 183 383 - -
HCH12g0438 720 SUPERFAMILY RNA-binding domain, RBD 60 143 IPR035979 GO:0003676(InterPro)
HCH12g0438 720 FunFam Eukaryotic translation initiation factor 3 subunit B 57 156 - -
HCH12g0438 720 PIRSF Transl_init_eIF3b 9 714 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
HCH12g0438 720 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 50 714 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
HCH12g0438 720 CDD RRM_eIF3B 61 144 IPR034363 -
HCH12g0438 720 MobiDBLite consensus disorder prediction 682 701 - -
HCH12g0438 720 Pfam RNA recognition motif 84 139 IPR000504 GO:0003723(InterPro)
HCH12g0438 720 Pfam Eukaryotic translation initiation factor eIF2A 407 607 IPR013979 -
HCH12g0438 720 Gene3D - 403 631 IPR015943 GO:0005515(InterPro)
HCH12g0438 720 Coils Coil 688 708 - -
HCH12g0438 720 Gene3D - 57 156 IPR012677 -
HCH12g0438 720 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 38 709 IPR011400 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0005852(PANTHER)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0006413(PANTHER)|GO:0031369(InterPro)
HCH12g0438 720 SMART rrm1_1 63 144 IPR000504 GO:0003723(InterPro)
HCH12g0438 720 SUPERFAMILY DPP6 N-terminal domain-like 219 599 - -
HCH12g0438 720 Gene3D - 183 383 IPR015943 GO:0005515(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0438 K03253 - csv:101213144 1300.42