Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0442 ATGGGCTATCTGAATTCAGTCTTGTCTTGCTCTAGCCAGATTCATGCCGCTGAAGAAGCTCCTGTTAGCGGCGGTGGACTTAGTCAGAATGGCAAGTTCAGCTATGGATATGCTAGTTCTCCAGGGAAGCGGTCTTCCATGGAGGATTTTTACGAGACACGAATTGATGGCGTGGAGGGAGAAATAGTTGGTCTCTTTGGGGTTTTTGATGGTCATGGGGGTGCGCGGGCTGCTGAGTATGTGAAGCAAAATCTTTTTAGTAATTTGATTGGCCACCCAAAGTTCATATCCGATACCAAATCAGCAATAGCTGATGCATACAATCACACAGACTCAGAATTTCTGAAATCAGAAAATAATCAAAACAGAGATGCTGGATCAACTGCTTCCACTGCCATCCTTGTTGGCGACCGTTTACTTGTTGCAAATGTGGGTGATTCTAGAGCTGTTATTTGCCGGGGTGGCAATGCCATTGCTGTCTCCCGAGATCATAAGCCTGACCAAACTGATGAGCGACAAAGGATTGAAGATGCTGGAGGATTTGTGATGTGGGCTGGAACTTGGAGAGTTGGAGGCGTTCTTGCTGTTTCACGTGCATTTGGTGATAGGTTGTTAAAGCAGTATGTTGTTGCTGATCCTGAGATTCAGGAAGTAAAGATCGATAACTCTCTTGAGTTTCTTATACTCGCAAGTGATGGACTTTGGGATGTCGTCTCCAATGAGGAGGCTGTTGCAATGATTAAGCCAATTCAGGACCCAGAAGAGGCGGCCAAGAGGCTGATGCAGGAAGCATATCAGAGGGGCAGTGCAGATAACATTACTTGTGTCGTGGTTCGTTTTTTGGCCAATCAAGGAAGCCCTTCTGGGTAA 870 46.21 MGYLNSVLSCSSQIHAAEEAPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVEGEIVGLFGVFDGHGGARAAEYVKQNLFSNLIGHPKFISDTKSAIADAYNHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEVKIDNSLEFLILASDGLWDVVSNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGSPSG 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2557650 2561177 + evm.model.ptg000002l.1217 HCH12g0442 555289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0442 289 Gene3D - 26 284 IPR036457 -
HCH12g0442 289 PANTHER PROTEIN PHOSPHATASE 30 279 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH12g0442 289 CDD PP2Cc 33 280 IPR001932 -
HCH12g0442 289 FunFam probable protein phosphatase 2C 59 26 284 - -
HCH12g0442 289 SMART PP2C_SIG_2 45 280 IPR001932 -
HCH12g0442 289 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
HCH12g0442 289 SUPERFAMILY PP2C-like 28 280 IPR036457 -
HCH12g0442 289 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169(InterPro)
HCH12g0442 289 SMART PP2C_4 24 278 IPR001932 -
HCH12g0442 289 Pfam Protein phosphatase 2C 63 273 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g1300 HCH-Chr11:44995154 HCH12g0442 HCH-Chr12:2557650 2.70E-92 dispersed
HCH11g1331 HCH-Chr11:45244950 HCH12g0442 HCH-Chr12:2557650 1.90E-29 dispersed
HCH12g0442 HCH-Chr12:2557650 HCH13g0185 HCH-Chr13:1245736 1.00E-96 dispersed
HCH12g0442 HCH-Chr12:2557650 HCH7g0133 HCH-Chr7:899353 1.00E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0442 K17506 - csv:101216117 555.058