Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0444 ATGGTTTGCGAGATGGAGACCGATGTTTTCGAAGATATGGACATTGAAGGCCTTCCTTCTATGTGGCCTGAGGATGTTGGACCTGATGTTAGAAATCAGTTTAATGTAGAAAGGCCAGGAGCTGATCAAGATATGTTGGAAGAAGTTAACATAATCGAGGAGCCGACCTTTGTCGATTTCAAGAGACTTGTAGAGTTAACGAACTATACTGAGAAAGGATCTTCTCAATTGCAGTATCTTGCAAAACAGTTGGAGTATAAACAGGCAAATGCCGTGCGTCTCCTTAAAGAAGAACTCGACATTTTAAGCAAACAGCGGAAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAGGAGCATCTATTTGAAGAAGAAAGATATGGTGGTGATAAACGGCCTATCTCTATATTGGAAGAATCTTATGATCTATGGCAAGATATTCCAAGGAGGAAAACTGATTTTGTTGTTCAGAGTAAGAGAGTTGAAATAGATGCAGAGTATGATACAGTGACGTTCTGGAAACAGCGAGCGACTCATCTCGAGAAGTTGTTGGAAGCGAGTCTACAGCGAGAGCAGATGCTTGCAGAGAAGCTTCAGGAGAACATTAAAGATATTGAAAAGCAGTCCTCACCAGTTGAAGAATTGTCACAGATTCTGAAGAGAGCAGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCCGTTGTTATTGGTCATCAGGACAACGAGTTGCGTTATCGATTTATCTACAATCATTTTCCTAGTCTGCAAGGAGAGGATATTATAGGAAGAACAGACGTTGAGATTTTTAGTGGAGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTTTAGAGAAAGGGTTACCTGCAAAGAGGGAAATACAGTTTGACACAGAGTTATTTGGGTCGAAAACATTTTTGATTTACGTTGAACCTGTTTTCAGCAAGGCCGGAGAGACAATTGGAATTAATTATATGGGAATGGATATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATAGCTGTACAAAAAGCCAAGGAATCAGAACTAAACAAAACAATTCATATTACGGAGGAGACTATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATAAGATCTCCTCTATCTGGGGTGGTTAGTATGACTGAGATTCTCTCCGCCACAAAACTTGATCGGGAACAGCGACAATTAATAGATGTTATGATGTCTTCAGGAGATTTGGTGCTTCAACTTATAAATGATATCTTGGACCTTTCTAAAGTGGAATCAGGAGTCATGAAGTTGGAAGCTACCAAGTTCCGTCCAAGAGAGGTTGTAAAGCATGTTTTACAGACTGCCGCTGCGTCATTGCGAAAGTTTTTAGTTCTGGAAGGACGTGTAGCAGATGATGTTCCCATAGAGGTCATTGGAGACGTTCTTAGGATTCGGCAAATTCTCACCAACTTGATCAGCAATGCAATCAAGTTCACTCATAAGGGGAAGGTTGGGATTAAACTTTACGTGTTACCTGGACCACCTTTTGGGAAAGGGGGAGGATGCCATAAAAAATCAACAACAGATAACTCAACAGCTTCAACAAATGGTTTGGAAGAAGGATGTTATCCAGCACCTCAGAAGAACGGGCAAAAACACGGCGACCGAACTCGTTTACATTGTGATGCACCAGGAACCCCACGTAATAGTGATACTACAATAAAAGAAGATGGAGAGAATGAAATTTGTTCACCTGAAGCAGCTGTATGGATACGCTGCGACGTATATGATACAGGAATTGGAATACCAGAAAATGCATTACCTACCCTTTTCAAGAGGTACATGCAAGCTAGTGCCGATCATGCTCGAAAGTATGGAGGGACCGGACTAGGACTGGCGATATGCAAACAACTGGTTGAGTTGATGGGTGGTCATCTCACCGTCTCTAGCCGAGAGAATTGTGGATCTACATTTACATTTGTATTACCGTACAAGGTTTCAACCTCGTGTGATCCTTCTGATGATTCTGATGAGTACTCGGACGAGATCGATAGCGAGTCTCTAAATGGTGATATGACTGAGGGGTTTTTCCAATTCCAACCTCACAGTTTGAGTTCACTATCCTCTTCTAATGGATCCAACAGGACGCCGAAATTGTTGACACATTCAGTTGGTCATCCTGGCTCAACAAAACTCAATGGATTCACTCCCTCGAACAACATCGAATCAAGTGAAGCTTCTTCTGTTAGAGATGCCGGTTCAATTGAAAGTACAGTAACCTCAAGTGAATCACAATGTTCATCTAGTCCGAACTCAAATCTTGATAATGAGAAACCAGCTCATGGAGGAAACCAATGTCAACATGACAAAAAAGCCCGATCTCAAAATGAGAACATGAATTCCCTTCATAGATCAGCCAAAACAAAACAAGAAGATACATCAGAAACAACAAGTAAACCCCAAGGAATCGATCAGGGGAAGGAGAAACCCAACACAAGTTCCCCCTGTATAGAAACGACGACATCGGAACCCAAAATTCTCCTTGTTGAGGATAACAAGACCAATATAATGGTGACACAGTCCATGATGAAGAAGTTCGGCCATAAGATCGATGTGGTGACCAACGGAGTCGAAGCTGTGCGTGCAGTTCATCACCGTGCTTACGATCTCATTCTAATGGATGTTTTCATGCCAATTATGGATGGTCTTCAAGCAACGAGGTTAATTCGTTCTTTTGAGGAAACAGGAAGCTGGGAAGCAGCTGTAAATGCTGGAATCGACCTAACGGCACATTGTCCGGCTCCCTCCTCCGGCAAGAGGATGCCAATCATTGCTATGACAGCAAATGCCTTGTCAGAAAGCGCAGATGAGTGCTATGAAAACGGTATGGACTCATTCGTATCAAAGCCCATCACTTTTCAAAAGTTGAAGGAATGTCTTGAACGATATTTACCACGACATCCGTTGTAA 2979 41.83 MVCEMETDVFEDMDIEGLPSMWPEDVGPDVRNQFNVERPGADQDMLEEVNIIEEPTFVDFKRLVELTNYTEKGSSQLQYLAKQLEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYGGDKRPISILEESYDLWQDIPRRKTDFVVQSKRVEIDAEYDTVTFWKQRATHLEKLLEASLQREQMLAEKLQENIKDIEKQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDNELRYRFIYNHFPSLQGEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMTEILSATKLDREQRQLIDVMMSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRVADDVPIEVIGDVLRIRQILTNLISNAIKFTHKGKVGIKLYVLPGPPFGKGGGCHKKSTTDNSTASTNGLEEGCYPAPQKNGQKHGDRTRLHCDAPGTPRNSDTTIKEDGENEICSPEAAVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENCGSTFTFVLPYKVSTSCDPSDDSDEYSDEIDSESLNGDMTEGFFQFQPHSLSSLSSSNGSNRTPKLLTHSVGHPGSTKLNGFTPSNNIESSEASSVRDAGSIESTVTSSESQCSSSPNSNLDNEKPAHGGNQCQHDKKARSQNENMNSLHRSAKTKQEDTSETTSKPQGIDQGKEKPNTSSPCIETTTSEPKILLVEDNKTNIMVTQSMMKKFGHKIDVVTNGVEAVRAVHHRAYDLILMDVFMPIMDGLQATRLIRSFEETGSWEAAVNAGIDLTAHCPAPSSGKRMPIIAMTANALSESADECYENGMDSFVSKPITFQKLKECLERYLPRHPL 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2574668 2582711 - evm.model.ptg000002l.1215 HCH12g0444 555291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0444 992 FunFam Histidine kinase 5 841 988 - -
HCH12g0444 992 CDD HATPase_EvgS-ArcB-TorS-like 487 666 - -
HCH12g0444 992 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 668 IPR036890 -
HCH12g0444 992 MobiDBLite consensus disorder prediction 729 783 - -
HCH12g0444 992 MobiDBLite consensus disorder prediction 527 541 - -
HCH12g0444 992 MobiDBLite consensus disorder prediction 785 800 - -
HCH12g0444 992 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 591 667 IPR003594 -
HCH12g0444 992 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH12g0444 992 MobiDBLite consensus disorder prediction 524 579 - -
HCH12g0444 992 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH12g0444 992 PRINTS Bacterial sensor protein C-terminal signature 594 608 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH12g0444 992 PRINTS Bacterial sensor protein C-terminal signature 629 647 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH12g0444 992 PRINTS Bacterial sensor protein C-terminal signature 653 666 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH12g0444 992 SMART REC_2 847 983 IPR001789 GO:0000160(InterPro)
HCH12g0444 992 MobiDBLite consensus disorder prediction 706 723 - -
HCH12g0444 992 Pfam Response regulator receiver domain 849 916 IPR001789 GO:0000160(InterPro)
HCH12g0444 992 ProSiteProfiles Histidine kinase domain profile. 378 669 IPR005467 -
HCH12g0444 992 FunFam Putative histidine kinase 5 359 436 - -
HCH12g0444 992 Coils Coil 92 112 - -
HCH12g0444 992 SMART HKATPase_4 482 669 IPR003594 -
HCH12g0444 992 MobiDBLite consensus disorder prediction 818 844 - -
HCH12g0444 992 Gene3D - 839 987 - -
HCH12g0444 992 Gene3D PAS domain 213 348 - -
HCH12g0444 992 CDD REC_hyHK_CKI1_RcsC-like 849 983 - -
HCH12g0444 992 SUPERFAMILY CheY-like 846 990 IPR011006 -
HCH12g0444 992 MobiDBLite consensus disorder prediction 706 844 - -
HCH12g0444 992 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH12g0444 992 Gene3D - 358 436 - -
HCH12g0444 992 ProSiteProfiles Response regulatory domain profile. 848 987 IPR001789 GO:0000160(InterPro)
HCH12g0444 992 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH12g0444 992 Coils Coil 181 208 - -
HCH12g0444 992 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 52 988 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
HCH12g0444 992 Coils Coil 342 362 - -
HCH12g0444 992 Gene3D - 437 673 IPR036890 -
HCH12g0444 992 FunFam Histidine kinase 5 213 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0444 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0444 HCH-Chr12:2574668 HCH1g0075 HCH-Chr1:6270979 2.90E-42 dispersed
HCH12g0444 HCH-Chr12:2574668 HCH7g0328 HCH-Chr7:2343186 5.50E-41 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH13g1345 . 3 1232 Histidine Kinase Gene Family AT2G17820 63.6 0.0e+00 1460.3
HCH1g0075 . 18 991 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1352.4
HCH10g1380 . 20 985 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1323.9
HCH7g0328 . 278 1230 Histidine Kinase Gene Family AT2G01830 53.6 9.0e-276 946.8
HCH10g0077 . 58 1008 Histidine Kinase Gene Family AT2G01830 53.2 1.3e-274 943.0
HCH2g0666 . 287 1240 Histidine Kinase Gene Family AT2G01830 52.7 4.1e-268 921.4
HCH12g0444 . 1 987 Histidine Kinase Gene Family AT5G10720 58.5 1.4e-296 1015.8
HCH8g0009 . 1 1122 Histidine Kinase Gene Family AT1G09570 78.6 0.0e+00 1788.9
HCH7g0347 . 13 1111 Histidine Kinase Gene Family AT1G09570 54.6 0.0e+00 1209.9
HCH7g1026 . 41 1127 Histidine Kinase Gene Family AT1G09570 54.2 0.0e+00 1189.1
HCH7g1026 . 37 1068 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1662.5
HCH3g0755 . 10 1023 Histidine Kinase Gene Family AT2G18790 58.8 0.0e+00 1216.8
HCH7g0347 . 27 1068 Histidine Kinase Gene Family AT2G18790 52.6 1.1e-311 1066.2
HCH8g0009 . 21 1056 Histidine Kinase Gene Family AT2G18790 51.5 1.6e-310 1062.4
HCH7g0347 . 20 1115 Histidine Kinase Gene Family AT5G35840 63.1 0.0e+00 1389.0
HCH7g1026 . 41 1129 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1149.0
HCH8g0009 . 9 1116 Histidine Kinase Gene Family AT5G35840 51.2 0.0e+00 1107.8
HCH7g1026 . 37 1129 Histidine Kinase Gene Family AT4G16250 76.6 0.0e+00 1700.3
HCH3g0755 . 10 1095 Histidine Kinase Gene Family AT4G16250 57.0 0.0e+00 1252.7
HCH8g0009 . 8 1117 Histidine Kinase Gene Family AT4G16250 51.5 0.0e+00 1120.5
HCH7g0347 . 19 1114 Histidine Kinase Gene Family AT4G16250 52.3 0.0e+00 1114.0
HCH3g0755 . 24 1109 Histidine Kinase Gene Family AT4G18130 61.6 0.0e+00 1335.1
HCH7g1026 . 45 1127 Histidine Kinase Gene Family AT4G18130 58.8 0.0e+00 1270.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005508 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32668 PF02518 HATPase_c 1.50E-27 CL0025 HCH TR