Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0444 ATGGTTTGCGAGATGGAGACCGATGTTTTCGAAGATATGGACATTGAAGGCCTTCCTTCTATGTGGCCTGAGGATGTTGGACCTGATGTTAGAAATCAGTTTAATGTAGAAAGGCCAGGAGCTGATCAAGATATGTTGGAAGAAGTTAACATAATCGAGGAGCCGACCTTTGTCGATTTCAAGAGACTTGTAGAGTTAACGAACTATACTGAGAAAGGATCTTCTCAATTGCAGTATCTTGCAAAACAGTTGGAGTATAAACAGGCAAATGCCGTGCGTCTCCTTAAAGAAGAACTCGACATTTTAAGCAAACAGCGGAAAGAAGTTGAGCTCAAGAAATTGAAGATATTAGAGGAGCATCTATTTGAAGAAGAAAGATATGGTGGTGATAAACGGCCTATCTCTATATTGGAAGAATCTTATGATCTATGGCAAGATATTCCAAGGAGGAAAACTGATTTTGTTGTTCAGAGTAAGAGAGTTGAAATAGATGCAGAGTATGATACAGTGACGTTCTGGAAACAGCGAGCGACTCATCTCGAGAAGTTGTTGGAAGCGAGTCTACAGCGAGAGCAGATGCTTGCAGAGAAGCTTCAGGAGAACATTAAAGATATTGAAAAGCAGTCCTCACCAGTTGAAGAATTGTCACAGATTCTGAAGAGAGCAGACAATTTTTTGCATTTTGTTCTGCAGAATGCACCCGTTGTTATTGGTCATCAGGACAACGAGTTGCGTTATCGATTTATCTACAATCATTTTCCTAGTCTGCAAGGAGAGGATATTATAGGAAGAACAGACGTTGAGATTTTTAGTGGAGCTGGTGTTAAAGAATCTCAAGATTTCAAGAAAGAAGTTTTAGAGAAAGGGTTACCTGCAAAGAGGGAAATACAGTTTGACACAGAGTTATTTGGGTCGAAAACATTTTTGATTTACGTTGAACCTGTTTTCAGCAAGGCCGGAGAGACAATTGGAATTAATTATATGGGAATGGATATAACTGATCAGGTTAAAAAACGAGAAAAGATGGCAAAGCTTCGTGAGGAGATAGCTGTACAAAAAGCCAAGGAATCAGAACTAAACAAAACAATTCATATTACGGAGGAGACTATGCGAGCAAAGCAAATGCTAGCAACCATGTCACATGAAATAAGATCTCCTCTATCTGGGGTGGTTAGTATGACTGAGATTCTCTCCGCCACAAAACTTGATCGGGAACAGCGACAATTAATAGATGTTATGATGTCTTCAGGAGATTTGGTGCTTCAACTTATAAATGATATCTTGGACCTTTCTAAAGTGGAATCAGGAGTCATGAAGTTGGAAGCTACCAAGTTCCGTCCAAGAGAGGTTGTAAAGCATGTTTTACAGACTGCCGCTGCGTCATTGCGAAAGTTTTTAGTTCTGGAAGGACGTGTAGCAGATGATGTTCCCATAGAGGTCATTGGAGACGTTCTTAGGATTCGGCAAATTCTCACCAACTTGATCAGCAATGCAATCAAGTTCACTCATAAGGGGAAGGTTGGGATTAAACTTTACGTGTTACCTGGACCACCTTTTGGGAAAGGGGGAGGATGCCATAAAAAATCAACAACAGATAACTCAACAGCTTCAACAAATGGTTTGGAAGAAGGATGTTATCCAGCACCTCAGAAGAACGGGCAAAAACACGGCGACCGAACTCGTTTACATTGTGATGCACCAGGAACCCCACGTAATAGTGATACTACAATAAAAGAAGATGGAGAGAATGAAATTTGTTCACCTGAAGCAGCTGTATGGATACGCTGCGACGTATATGATACAGGAATTGGAATACCAGAAAATGCATTACCTACCCTTTTCAAGAGGTACATGCAAGCTAGTGCCGATCATGCTCGAAAGTATGGAGGGACCGGACTAGGACTGGCGATATGCAAACAACTGGTTGAGTTGATGGGTGGTCATCTCACCGTCTCTAGCCGAGAGAATTGTGGATCTACATTTACATTTGTATTACCGTACAAGGTTTCAACCTCGTGTGATCCTTCTGATGATTCTGATGAGTACTCGGACGAGATCGATAGCGAGTCTCTAAATGGTGATATGACTGAGGGGTTTTTCCAATTCCAACCTCACAGTTTGAGTTCACTATCCTCTTCTAATGGATCCAACAGGACGCCGAAATTGTTGACACATTCAGTTGGTCATCCTGGCTCAACAAAACTCAATGGATTCACTCCCTCGAACAACATCGAATCAAGTGAAGCTTCTTCTGTTAGAGATGCCGGTTCAATTGAAAGTACAGTAACCTCAAGTGAATCACAATGTTCATCTAGTCCGAACTCAAATCTTGATAATGAGAAACCAGCTCATGGAGGAAACCAATGTCAACATGACAAAAAAGCCCGATCTCAAAATGAGAACATGAATTCCCTTCATAGATCAGCCAAAACAAAACAAGAAGATACATCAGAAACAACAAGTAAACCCCAAGGAATCGATCAGGGGAAGGAGAAACCCAACACAAGTTCCCCCTGTATAGAAACGACGACATCGGAACCCAAAATTCTCCTTGTTGAGGATAACAAGACCAATATAATGGTGACACAGTCCATGATGAAGAAGTTCGGCCATAAGATCGATGTGGTGACCAACGGAGTCGAAGCTGTGCGTGCAGTTCATCACCGTGCTTACGATCTCATTCTAATGGATGTTTTCATGCCAATTATGGATGGTCTTCAAGCAACGAGGTTAATTCGTTCTTTTGAGGAAACAGGAAGCTGGGAAGCAGCTGTAAATGCTGGAATCGACCTAACGGCACATTGTCCGGCTCCCTCCTCCGGCAAGAGGATGCCAATCATTGCTATGACAGCAAATGCCTTGTCAGAAAGCGCAGATGAGTGCTATGAAAACGGTATGGACTCATTCGTATCAAAGCCCATCACTTTTCAAAAGTTGAAGGAATGTCTTGAACGATATTTACCACGACATCCGTTGTAA 2979 41.83 MVCEMETDVFEDMDIEGLPSMWPEDVGPDVRNQFNVERPGADQDMLEEVNIIEEPTFVDFKRLVELTNYTEKGSSQLQYLAKQLEYKQANAVRLLKEELDILSKQRKEVELKKLKILEEHLFEEERYGGDKRPISILEESYDLWQDIPRRKTDFVVQSKRVEIDAEYDTVTFWKQRATHLEKLLEASLQREQMLAEKLQENIKDIEKQSSPVEELSQILKRADNFLHFVLQNAPVVIGHQDNELRYRFIYNHFPSLQGEDIIGRTDVEIFSGAGVKESQDFKKEVLEKGLPAKREIQFDTELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVKKREKMAKLREEIAVQKAKESELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMTEILSATKLDREQRQLIDVMMSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAAASLRKFLVLEGRVADDVPIEVIGDVLRIRQILTNLISNAIKFTHKGKVGIKLYVLPGPPFGKGGGCHKKSTTDNSTASTNGLEEGCYPAPQKNGQKHGDRTRLHCDAPGTPRNSDTTIKEDGENEICSPEAAVWIRCDVYDTGIGIPENALPTLFKRYMQASADHARKYGGTGLGLAICKQLVELMGGHLTVSSRENCGSTFTFVLPYKVSTSCDPSDDSDEYSDEIDSESLNGDMTEGFFQFQPHSLSSLSSSNGSNRTPKLLTHSVGHPGSTKLNGFTPSNNIESSEASSVRDAGSIESTVTSSESQCSSSPNSNLDNEKPAHGGNQCQHDKKARSQNENMNSLHRSAKTKQEDTSETTSKPQGIDQGKEKPNTSSPCIETTTSEPKILLVEDNKTNIMVTQSMMKKFGHKIDVVTNGVEAVRAVHHRAYDLILMDVFMPIMDGLQATRLIRSFEETGSWEAAVNAGIDLTAHCPAPSSGKRMPIIAMTANALSESADECYENGMDSFVSKPITFQKLKECLERYLPRHPL 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2574668 2582711 - evm.model.ptg000002l.1215 HCH12g0444 555291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0444 992 FunFam Histidine kinase 5 841 988 - -
HCH12g0444 992 CDD HATPase_EvgS-ArcB-TorS-like 487 666 - -
HCH12g0444 992 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 425 668 IPR036890 -
HCH12g0444 992 MobiDBLite consensus disorder prediction 729 783 - -
HCH12g0444 992 MobiDBLite consensus disorder prediction 527 541 - -
HCH12g0444 992 MobiDBLite consensus disorder prediction 785 800 - -
HCH12g0444 992 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 591 667 IPR003594 -
HCH12g0444 992 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 436 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH12g0444 992 MobiDBLite consensus disorder prediction 524 579 - -
HCH12g0444 992 Pfam His Kinase A (phospho-acceptor) domain 373 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH12g0444 992 PRINTS Bacterial sensor protein C-terminal signature 594 608 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH12g0444 992 PRINTS Bacterial sensor protein C-terminal signature 629 647 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH12g0444 992 PRINTS Bacterial sensor protein C-terminal signature 653 666 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH12g0444 992 SMART REC_2 847 983 IPR001789 GO:0000160(InterPro)
HCH12g0444 992 MobiDBLite consensus disorder prediction 706 723 - -
HCH12g0444 992 Pfam Response regulator receiver domain 849 916 IPR001789 GO:0000160(InterPro)
HCH12g0444 992 ProSiteProfiles Histidine kinase domain profile. 378 669 IPR005467 -
HCH12g0444 992 FunFam Putative histidine kinase 5 359 436 - -
HCH12g0444 992 Coils Coil 92 112 - -
HCH12g0444 992 SMART HKATPase_4 482 669 IPR003594 -
HCH12g0444 992 MobiDBLite consensus disorder prediction 818 844 - -
HCH12g0444 992 Gene3D - 839 987 - -
HCH12g0444 992 Gene3D PAS domain 213 348 - -
HCH12g0444 992 CDD REC_hyHK_CKI1_RcsC-like 849 983 - -
HCH12g0444 992 SUPERFAMILY CheY-like 846 990 IPR011006 -
HCH12g0444 992 MobiDBLite consensus disorder prediction 706 844 - -
HCH12g0444 992 SMART HisKA_10 371 436 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH12g0444 992 Gene3D - 358 436 - -
HCH12g0444 992 ProSiteProfiles Response regulatory domain profile. 848 987 IPR001789 GO:0000160(InterPro)
HCH12g0444 992 CDD HisKA 370 432 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH12g0444 992 Coils Coil 181 208 - -
HCH12g0444 992 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 52 988 - GO:0000155(PANTHER)|GO:0005887(PANTHER)|GO:0009927(PANTHER)|GO:0046777(PANTHER)
HCH12g0444 992 Coils Coil 342 362 - -
HCH12g0444 992 Gene3D - 437 673 IPR036890 -
HCH12g0444 992 FunFam Histidine kinase 5 213 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0444 HCH-Chr12:2574668 HCH1g0075 HCH-Chr1:6270979 2.90E-42 dispersed
HCH12g0444 HCH-Chr12:2574668 HCH7g0328 HCH-Chr7:2343186 5.50E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32668 PF02518 HATPase_c 1.50E-27 CL0025 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0444 - - - 0.0