Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0447 | ATGGAATCAGAAGATTCAGTAAGATTGAGATTAGAAGAATTGCATAAAGATTTGGGCAAGAGATTGAAATTTGAGGCAGCAATCTCCTCCATCACTTCTCTTCTTCGAGATCGCTACCCTACCGCTTCTCCTTCTCTCCGTCAATCGTTCTATTCTGAAATATGCCGAGTTGCAACAGTATTGAAGACGAGATTTACAGCCCCGGGTTTCTGGCTTGCCGGTCTCGGGCTTTTCGAGCTTTCGTTAACATTGCTCTCTGATAACTCTGAGAGAAAGCATCTGCAGGCTTGTGTAGCTCAGGCTAAGGAAATTCTGCACGAAGTTGAAAATCCATCTCAGCTTCCACAAAGCAATTCATCGAATGGAGGCTATCTTTTCGAGGGGCATCTCACGGTTGATCCGGAGCCACCACAGCCTCAGTGGCTGGTGCAGTCAAACCTCTTGACTACTGCCGCTACGCTCTTTGCTGCCGAATCTTCTCAAGGTCCGGTGGAAGGCAATGATACACCCGAGAATGCTGCTAATGCTAATATTCTTCAGGCGCTTATTGAAAATCTCGATAATGTTGTAGATGAGTTCCTGGACACGGCTGGTGGACCACCAAAAGTCCCTCCTGCGAGTAAAGAAATTGTTGCAAAGCTTCCTGTTATTACTATAACGGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTAGAGTGTGCCATTTGCAGGGAAAACTTAGCAGTCGATGACAAGATGCAGGAATTGCCTTGCAAGCATACGTTCCACCCACCTTGTTTGAAGCCATGGCTGGATGAGCACAACTCTTGTCCAATCTGTCGGCATGAGTTGCCTACCGACGACCATGCATATGAGAGCTGGAAGGAGCGAGAGAAAGAGGCTGAAGAAGAGAGAAAAGGTGCCGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTAA | 942 | 46.6 | MESEDSVRLRLEELHKDLGKRLKFEAAISSITSLLRDRYPTASPSLRQSFYSEICRVATVLKTRFTAPGFWLAGLGLFELSLTLLSDNSERKHLQACVAQAKEILHEVENPSQLPQSNSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFAAESSQGPVEGNDTPENAANANILQALIENLDNVVDEFLDTAGGPPKVPPASKEIVAKLPVITITEEVLAKLGRDVECAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHAYESWKEREKEAEEERKGAANAVRGGEYMYI | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2612401 | 2614126 | + | evm.model.ptg000002l.1212 | HCH12g0447 | 555294 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0447 | 313 | CDD | RING-H2_RNF126-like | 232 | 274 | - | - | |
HCH12g0447 | 313 | SMART | ring_2 | 233 | 273 | IPR001841 | - | |
HCH12g0447 | 313 | SUPERFAMILY | RING/U-box | 227 | 280 | - | - | |
HCH12g0447 | 313 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 120 | 279 | - | GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER) | |
HCH12g0447 | 313 | Coils | Coil | 284 | 304 | - | - | |
HCH12g0447 | 313 | FunFam | E3 ubiquitin-protein ligase RNF181 | 195 | 280 | - | - | |
HCH12g0447 | 313 | ProSiteProfiles | Zinc finger RING-type profile. | 233 | 274 | IPR001841 | - | |
HCH12g0447 | 313 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 280 | IPR013083 | - | |
HCH12g0447 | 313 | Pfam | Ring finger domain | 232 | 274 | IPR001841 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0447 | HCH-Chr12:2612401 | HCH3g0238 | HCH-Chr3:1523968 | 4.20E-19 | dispersed | |
HCH12g0447 | HCH-Chr12:2612401 | HCH2g1068 | HCH-Chr2:53680683 | 2.30E-17 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0447 | K16274 | - | gmx:100800189 | 419.083 |