Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0447 ATGGAATCAGAAGATTCAGTAAGATTGAGATTAGAAGAATTGCATAAAGATTTGGGCAAGAGATTGAAATTTGAGGCAGCAATCTCCTCCATCACTTCTCTTCTTCGAGATCGCTACCCTACCGCTTCTCCTTCTCTCCGTCAATCGTTCTATTCTGAAATATGCCGAGTTGCAACAGTATTGAAGACGAGATTTACAGCCCCGGGTTTCTGGCTTGCCGGTCTCGGGCTTTTCGAGCTTTCGTTAACATTGCTCTCTGATAACTCTGAGAGAAAGCATCTGCAGGCTTGTGTAGCTCAGGCTAAGGAAATTCTGCACGAAGTTGAAAATCCATCTCAGCTTCCACAAAGCAATTCATCGAATGGAGGCTATCTTTTCGAGGGGCATCTCACGGTTGATCCGGAGCCACCACAGCCTCAGTGGCTGGTGCAGTCAAACCTCTTGACTACTGCCGCTACGCTCTTTGCTGCCGAATCTTCTCAAGGTCCGGTGGAAGGCAATGATACACCCGAGAATGCTGCTAATGCTAATATTCTTCAGGCGCTTATTGAAAATCTCGATAATGTTGTAGATGAGTTCCTGGACACGGCTGGTGGACCACCAAAAGTCCCTCCTGCGAGTAAAGAAATTGTTGCAAAGCTTCCTGTTATTACTATAACGGAGGAAGTTCTTGCCAAGCTAGGAAGAGATGTAGAGTGTGCCATTTGCAGGGAAAACTTAGCAGTCGATGACAAGATGCAGGAATTGCCTTGCAAGCATACGTTCCACCCACCTTGTTTGAAGCCATGGCTGGATGAGCACAACTCTTGTCCAATCTGTCGGCATGAGTTGCCTACCGACGACCATGCATATGAGAGCTGGAAGGAGCGAGAGAAAGAGGCTGAAGAAGAGAGAAAAGGTGCCGCAAATGCTGTTCGTGGTGGTGAATATATGTATATTTAA 942 46.6 MESEDSVRLRLEELHKDLGKRLKFEAAISSITSLLRDRYPTASPSLRQSFYSEICRVATVLKTRFTAPGFWLAGLGLFELSLTLLSDNSERKHLQACVAQAKEILHEVENPSQLPQSNSSNGGYLFEGHLTVDPEPPQPQWLVQSNLLTTAATLFAAESSQGPVEGNDTPENAANANILQALIENLDNVVDEFLDTAGGPPKVPPASKEIVAKLPVITITEEVLAKLGRDVECAICRENLAVDDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDDHAYESWKEREKEAEEERKGAANAVRGGEYMYI 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2612401 2614126 + evm.model.ptg000002l.1212 HCH12g0447 555294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0447 313 CDD RING-H2_RNF126-like 232 274 - -
HCH12g0447 313 SMART ring_2 233 273 IPR001841 -
HCH12g0447 313 SUPERFAMILY RING/U-box 227 280 - -
HCH12g0447 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 120 279 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
HCH12g0447 313 Coils Coil 284 304 - -
HCH12g0447 313 FunFam E3 ubiquitin-protein ligase RNF181 195 280 - -
HCH12g0447 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
HCH12g0447 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 198 280 IPR013083 -
HCH12g0447 313 Pfam Ring finger domain 232 274 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0447 HCH-Chr12:2612401 HCH3g0238 HCH-Chr3:1523968 4.20E-19 dispersed
HCH12g0447 HCH-Chr12:2612401 HCH2g1068 HCH-Chr2:53680683 2.30E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0447 K16274 - gmx:100800189 419.083