Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0463 ATGAGGAGGCTAACTATGGCATTTCCTGCTGAGTTTGTTGTTCTGGTTTTTCTCTTTTACGCCACCGTTGGTGTTGTGGATTCAGAAGATGGAGCAACGTTGTTGGAGATTAAGAAATCATTCAGGGACGTGGATAATGTTTTATATGACTGGACAAACTCACCATCTTCTGATTACTGTATATGGAGAGGTGTAACATGTGATAATGCCACTTTCAATGTTATTTCTCTTAATCTATCAGGTCTTAATCTAGATGGTGAAATTTCTCCAGCAGTTGGAAATCTTAAGGGCCTGCAAAATCTGGATTTTAGGGGAAATAGTCTTTCTGGGCAAATTCCTGATGAGATTGGTGACTGTTCTTCGTTGCAAAATTTGGACTTGTCGTTTAATGAGATTTATGGGGACATACCATTTTCCATTTCAAAGTTGAAACAACTGGAGATGCTAATTTTGAAAAATAATCGACTGATTGGACCGATTCCTTCGACCTTATCTCAGATTCCAAACTTGAAGGTCTTAGATCTGGCCCAGAATAATCTTAGTGGGGAAATACCGAGACTAATTTACTGGAATGAAGTATTGCAATATCTTGGTTTGCGCGGTAACAATTTGGTGGGTACGCTCTCTCCAGATATGTGCCAGCTCACTGGTTTATGGTATTTTGATGTAAGAAACAACAGTTTAACAGGCAGCATACCTCAAACTATAGGCAACTGCACTGCCTTCCAGGTCTTGGACCTGTCATACAATCATCTAACTGGAGAGATACCATTCAATATCGGTTTCCTTCAAGTCGCCACACTGTCTTTACAAGGCAATCAACTATCAGGTCCTATTCCTCCAGTAATTGGTCTGATGCAGGCACTTGCAGTGTTAGATTTGAGCTGCAACATGTTAACCGGACCAATCCCTCCAATCTTAGGGAATTTGACTTATACTGAGAAACTGTATTTGCACGGAAACAAACTCACTGGGTCCATTCCGGCAGAGCTTGGGAATATGTCGAAGCTTCATTATCTAGAATTGAACGATAATCATCTTACCGGGAACATTCCAGCTCATCTTGGGAAACTCACAGATTTGTTTGACCTAAATGTTGCTAATAACAATCTTGGGGGGCCAATTCCTGATAATCTTAGCTCATGCACAAATCTTAACAGCCTAAATGTGCATGGAAACAAATTGAATGGATCCATCCCGCCGTCCTTCCAGAGGTTGGAGAGTATGACTTACCTAAATCTCTCCTCAAATGATCTAAGGGGTCCTATTCCAGTTGAGCTATCTCGGATTGGAAATTTGGATACACTAGACATTTCAAATAATAAAATTAGTGGCCCCATTCCTTCATCCTTTGGTGATTTGGAACATCTTCTGAAGCTGAATTTGAGCAGAAATCATTTAACAGGACTTATACCAGCAGAATTTGGTAATCTAAGGAGTGTAATGGAAATAGATATTTCACACAATCAGCTCTCTGGATTCATTCCTCAGGAGCTTAGTCAACTTCAAAATCTGTTTTCTTTGAGACTTGAAAACAACAATCTGTCTGGGGATGTGATGTCACTGATCAACTGCCTTAGTCTGACTGAATTAAATGTGTCTTACAACAATCTAATTGGTGACATTCCCACAAGCAACAACTTCTCAAGATTTTCATCTGACAGTTTTCTTGGAAATCTTGCTCTCTGTGGATATTGGAATAACAATGACTATCCATGTCACGAGACTCACACATCAGAGCGAGTGACAATATCTAAGGCTGCTATCCTGGGAATTGCTCTTGGTGCCCTGGTAATTCTTCTAATGATCTTGCTGACGGTGTGCCGTCCAAATAATACAATACCTTTTCCAGATGGAGCACTTGATAAACCAGTTACATACTCAACTCCCAAGCTAGTGATCCTCCACATGAATATGGCACTGCATGTGTACGAGGATATCATGAGGATGACTGAAAATTTGAGTGAAAAGTACATAATTGGTTATGGTGCTTCAAGCACAGTCTACAAATGTGTACTGAAAAATTGCAAACCTGTGGCTGTCAAGAAGCTGTATTCTCACCAACCCCATGGTATGAAGGAATTCGAGACAGAACTTGAAACCGTGGGCAGCATCAAGCACAGGAATCTTGTCAGCCTCCAAGGATACTCCTTGTCCCCCTCTGGGAACCTCCTCTTCTATGACTACATGGAAAATGGCAGTCTTTGGGACCACCTTCATGGTTCTAGCTCCACCAAGAAGAAAAAGCTTGACTGGGACACTCGGCTTAACATTGCACTCGGAGCAGCCCAAGGACTATCATATCTACACCATGATTGCAGTCCTCGCATTATTCATAGGGACGTCAAATCATCAAACATTCTATTAGACAAGGATTTTGACGCCCATCTCACCGATTTTGGCATCGCCAAGAGCCTATGCACCTCAAAGACGTATACTTCTACTTATATAATGGGCACCATTGGATACATTGATCCAGAGTATGCTCGAACTTCCCGACTTACAGAGAAATCCGATGTCTACAGCTTTGGCGTTGTGGTACTTGAGTTACTCACAGGAAGGAAAGCTGTCGACAATGAATCGAATCTCCATCATCTGATTTTATCAAAGACTGCCAACAATGCTGTCATGGAGACTGTGGATCCTGAAATAACTGCAACTTGCAAGGACCTTTCAGCTGTAAAGAAGCTATTTCAGCTGGCTCTTCTGTGCACCAAGAGGCAGCCATCAGATCGGCCAACAATGCACGAAGTGACACGCGTCCTCGGGAGTCTTCTACCATCCACCACGCCACCAAAACAGATACCAACACTAACATCCATGGCCCCAACTGCCAAAGTCCCATGCTACAAGGATGAATATGCAAACCTAAAAACCCCGCACGTGCTAAATTGTCCGTCGATGAGCACCTCGGACGCCCAACTCTTTCTCAAGTTTGGCGAGGTTATATCACAAAACAGCGAGTAA 2967 42.3 MRRLTMAFPAEFVVLVFLFYATVGVVDSEDGATLLEIKKSFRDVDNVLYDWTNSPSSDYCIWRGVTCDNATFNVISLNLSGLNLDGEISPAVGNLKGLQNLDFRGNSLSGQIPDEIGDCSSLQNLDLSFNEIYGDIPFSISKLKQLEMLILKNNRLIGPIPSTLSQIPNLKVLDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGTLSPDMCQLTGLWYFDVRNNSLTGSIPQTIGNCTAFQVLDLSYNHLTGEIPFNIGFLQVATLSLQGNQLSGPIPPVIGLMQALAVLDLSCNMLTGPIPPILGNLTYTEKLYLHGNKLTGSIPAELGNMSKLHYLELNDNHLTGNIPAHLGKLTDLFDLNVANNNLGGPIPDNLSSCTNLNSLNVHGNKLNGSIPPSFQRLESMTYLNLSSNDLRGPIPVELSRIGNLDTLDISNNKISGPIPSSFGDLEHLLKLNLSRNHLTGLIPAEFGNLRSVMEIDISHNQLSGFIPQELSQLQNLFSLRLENNNLSGDVMSLINCLSLTELNVSYNNLIGDIPTSNNFSRFSSDSFLGNLALCGYWNNNDYPCHETHTSERVTISKAAILGIALGALVILLMILLTVCRPNNTIPFPDGALDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAVKKLYSHQPHGMKEFETELETVGSIKHRNLVSLQGYSLSPSGNLLFYDYMENGSLWDHLHGSSSTKKKKLDWDTRLNIALGAAQGLSYLHHDCSPRIIHRDVKSSNILLDKDFDAHLTDFGIAKSLCTSKTYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSFGVVVLELLTGRKAVDNESNLHHLILSKTANNAVMETVDPEITATCKDLSAVKKLFQLALLCTKRQPSDRPTMHEVTRVLGSLLPSTTPPKQIPTLTSMAPTAKVPCYKDEYANLKTPHVLNCPSMSTSDAQLFLKFGEVISQNSE 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2710866 2718449 - evm.model.ptg000002l.1196 HCH12g0463 555310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0463 988 Gene3D Transferase(Phosphotransferase) domain 1 730 934 - -
HCH12g0463 988 Gene3D Ribonuclease Inhibitor 190 263 IPR032675 -
HCH12g0463 988 ProSiteProfiles Protein kinase domain profile. 654 926 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0463 988 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
HCH12g0463 988 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 302 575 - -
HCH12g0463 988 ProSiteProfiles Leucine-rich repeat profile. 169 191 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 192 301 - -
HCH12g0463 988 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 27 191 - -
HCH12g0463 988 SUPERFAMILY L domain-like 54 305 - -
HCH12g0463 988 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 625 729 - -
HCH12g0463 988 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 730 933 - -
HCH12g0463 988 CDD STKc_IRAK 660 925 - -
HCH12g0463 988 Pfam Leucine Rich repeat 525 541 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 ProSitePatterns Protein kinases ATP-binding region signature. 660 683 IPR017441 GO:0005524(InterPro)
HCH12g0463 988 Gene3D Ribonuclease Inhibitor 264 350 IPR032675 -
HCH12g0463 988 Gene3D Ribonuclease Inhibitor 351 447 IPR032675 -
HCH12g0463 988 SUPERFAMILY Protein kinase-like (PK-like) 632 922 IPR011009 -
HCH12g0463 988 Pfam Leucine Rich Repeat 289 310 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 Pfam Leucine Rich Repeat 243 262 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 Pfam Leucine Rich Repeat 336 358 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 Pfam Leucine Rich Repeat 384 406 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 Pfam Leucine Rich Repeat 314 334 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 Pfam Leucine Rich Repeat 409 428 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 Pfam Leucine Rich Repeat 218 239 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 Pfam Leucine Rich Repeat 98 119 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0463 988 Gene3D Ribonuclease Inhibitor 27 189 IPR032675 -
HCH12g0463 988 Gene3D Ribonuclease Inhibitor 448 572 IPR032675 -
HCH12g0463 988 SMART serkin_6 654 922 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0463 988 SUPERFAMILY L domain-like 263 552 - -
HCH12g0463 988 Gene3D Phosphorylase Kinase; domain 1 625 729 - -
HCH12g0463 988 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 Pfam Leucine rich repeat 145 204 IPR001611 GO:0005515(InterPro)
HCH12g0463 988 Pfam Protein kinase domain 657 919 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0463 988 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 307 922 IPR051564 GO:0016020(PANTHER)
HCH12g0463 988 SMART LRR_typ_2 334 358 IPR003591 -
HCH12g0463 988 SMART LRR_typ_2 454 477 IPR003591 -
HCH12g0463 988 SMART LRR_typ_2 478 502 IPR003591 -
HCH12g0463 988 SMART LRR_typ_2 167 191 IPR003591 -
HCH12g0463 988 SMART LRR_typ_2 95 119 IPR003591 -
HCH12g0463 988 SMART LRR_typ_2 215 239 IPR003591 -
HCH12g0463 988 SMART LRR_typ_2 406 430 IPR003591 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0463 HCH-Chr12:2710866 HCH5g0755 HCH-Chr5:5559540 4.20E-134 dispersed
HCH12g0463 HCH-Chr12:2710866 HCH4g1243 HCH-Chr4:8488622 2.30E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81109 PF00069 Pkinase 1.10E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0463 K20718 - csv:101214398 1816.97