Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0472 ATGGATGAAAACAATATCAAAGCTTCAAAAGCTGCTGGATTAAGCTTGCAGTCTGAAAAGGAAAATGGAAATGGAGGCCAAATAGTTCTTGAAATTCCAAGTGAAATATATTCAAAAGAATCACATGATGGAAAAGGGCATTCTTCTTCTGTGGAAATGTCACAGTTGTTCATTCCAAGTGCAAATAAGCCTCCAAAAATTCCTAGTTTTAATGAAACCCTAGTTAGAAAAAGGTCTCTTGCAAGATCAGTTTATTCCAAACCAAAATCCAGATTTGGGGAGCAACCATATCATGTTGATTCTGATATATTTGAAGAGAATCATTCTCATTCTTTCAGTAGGGCTTCTCCAGGTAACAAATCAGCTTCCTCTGCTGCTATGACCCCTAGGGCTCAAGCTGAAGAATATGATGATAAAGAAATTTACAAGATAGTTCAAATGAGTAAAGAGAAGCATAAGAAAGTTAAAGTTAAGTCCTTGATTGAATGGATGGGAGTTTTTTTCATTACTGGTTTTTTAGTGGCTAGCTTGACTGTTAATAAGTTGAGAAATTCATTTCTCTGGGCTTTAGAGATTTGGAAATGGTGTTTGCTTGCTACTGTGATTCTCTGTGGAATGATGGTTACTAATTGGGTTATGCATGTGATTGTTTTTATGATTGAAAGAAATTTTCTACTCAAGAAGAAAGTTCTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTGACTATTTGGTTGGCTGTGGTTCTTGTTACATGGGTGTCATTGTTCGATAGAGGGAATTATAGGATTTCGAAATCGAAGTTTGCTGGTAGGATTTTGGATGCTGTTACTTGGACTCTGTTGTCTCTTCTGATAGGGGCATTGTTGTGGTTGTTGAAGACATCTTTGCTGAAAATATTGGCTTCTAAGTTCCACATGAACCAATTTTTCGATAGAATTCAAGAATCTATTTTCCATCAGTATGTTCTACAAACCCTTTCGGGGTCGCCAGTGATAGAGGAGGCAGAAAGGATTGGGAATTCCGGCCATGTACTTGCAGGTCAAGTGAGTTTCAGAAGCAAGAAGGGAAAAGAAGCAGTGAAGAAGAAGAAGGTAATTGATATGGGAAGGATTCACCAGATGAAGAGAGAAAAAGTTTCAGCTTGGACTATGAAGGTGTTGGTTGATGCTGTTACAGGTTCGGAGTTGTCGACAATCTCACAAACACTTGATGAAAGCTACCAAAATCGTGGAGCTGAAGTTGCTGATACTGACAGTGAGATCACCAATGAGATGGAAGCCATAGCAGCCGCCTATAAAATTTTCAACAATGTTGCTCTTCCTGGAAACAATTACATAGAGGAGGAGGATCTTCTCAGATTTATGATTAAAGAAGAAGTGGATCTTGTGTTACCACTGTTCGAGGGAGCTGAGACCCGGCAAATCGACAAAAAAGCTTTAACCAACTGGGTGGTTAAGGTTTATCAAGGGAGGAAAACGCTTGCACATGCCTTGAAAGACACTAAAACAGCCGTAAAGCAATTAAATAATTTAGTGACAGCACTTCTGATAATAGTAACGGTTGTTGTGTGGCTTATGTTGATGGAAATTGCTACAACAAAAGTACTTGTCTTCCTACTATCTCAAGCTGCATTGGCAGTGTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCTCTAGTCTTTGTGTTTGTCATGCATCCGTTTGACGTCGGTGACCGTTGCGTAGTTGATGGTGTTCAGTTGTTGGTTGAAGAAATGAATATCTTGACAACAGTATTCTTGAAACTCAGCAATGAGAAGGTGTATTATCCCAACTCGGTTTTGGCGACAAAACCCATCAGCAACTATTATAGAAGCCCAGACATGAGCGACACCATAGAATTCTCGATCGGTTTTATGACACCGGTGGAGAGAATCGGGGCTATGAAAGAGAAGATAAAGAGGTATTTGGAGAAAAATCCACAACACTGGCATCCAAATCACAATGTGGTGGTGAAAGAGATTGAAGATGTGAACAAGATGAAGTTTGCTCTTTATGTCAATCACACCATGAATTTTCAAGAGTGGGGCGAGAAGAATCGTCGACGAACAGAACTTGTGATGGAATTGAAGAAGATTTTCGAAGAACTGAGGATTAACTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCCGTCGAATCTGAAACAAGCACTGCAACCCAGAAAAGATTTTAG 2229 39.21 MDENNIKASKAAGLSLQSEKENGNGGQIVLEIPSEIYSKESHDGKGHSSSVEMSQLFIPSANKPPKIPSFNETLVRKRSLARSVYSKPKSRFGEQPYHVDSDIFEENHSHSFSRASPGNKSASSAAMTPRAQAEEYDDKEIYKIVQMSKEKHKKVKVKSLIEWMGVFFITGFLVASLTVNKLRNSFLWALEIWKWCLLATVILCGMMVTNWVMHVIVFMIERNFLLKKKVLYFVHGLKKSVQVTIWLAVVLVTWVSLFDRGNYRISKSKFAGRILDAVTWTLLSLLIGALLWLLKTSLLKILASKFHMNQFFDRIQESIFHQYVLQTLSGSPVIEEAERIGNSGHVLAGQVSFRSKKGKEAVKKKKVIDMGRIHQMKREKVSAWTMKVLVDAVTGSELSTISQTLDESYQNRGAEVADTDSEITNEMEAIAAAYKIFNNVALPGNNYIEEEDLLRFMIKEEVDLVLPLFEGAETRQIDKKALTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLVTALLIIVTVVVWLMLMEIATTKVLVFLLSQAALAVFMFGNTCKNIFEALVFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLSNEKVYYPNSVLATKPISNYYRSPDMSDTIEFSIGFMTPVERIGAMKEKIKRYLEKNPQHWHPNHNVVVKEIEDVNKMKFALYVNHTMNFQEWGEKNRRRTELVMELKKIFEELRINYNLLPQTVHLFPVESETSTATQKRF 742
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 2773254 2776118 - evm.model.ptg000002l.1187 HCH12g0472 555319
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0472 742 MobiDBLite consensus disorder prediction 1 26 - -
HCH12g0472 742 MobiDBLite consensus disorder prediction 110 128 - -
HCH12g0472 742 FunFam Predicted mechanosensitive ion channel 571 620 - -
HCH12g0472 742 MobiDBLite consensus disorder prediction 10 24 - -
HCH12g0472 742 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 54 733 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
HCH12g0472 742 SUPERFAMILY Sm-like ribonucleoproteins 561 620 IPR010920 -
HCH12g0472 742 PIRSF Memb_At2g17000 17 742 IPR016688 -
HCH12g0472 742 Gene3D - 571 620 IPR023408 -
HCH12g0472 742 MobiDBLite consensus disorder prediction 109 132 - -
HCH12g0472 742 Pfam Mechanosensitive ion channel, beta-domain 556 621 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0472 HCH-Chr12:2773254 HCH6g1377 HCH-Chr6:47698743 6.60E-148 dispersed
HCH12g0472 HCH-Chr12:2773254 HCH8g0615 HCH-Chr8:42947174 8.20E-199 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0472 K22048 - csv:101217197 912.138