Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0472 ATGGATGAAAACAATATCAAAGCTTCAAAAGCTGCTGGATTAAGCTTGCAGTCTGAAAAGGAAAATGGAAATGGAGGCCAAATAGTTCTTGAAATTCCAAGTGAAATATATTCAAAAGAATCACATGATGGAAAAGGGCATTCTTCTTCTGTGGAAATGTCACAGTTGTTCATTCCAAGTGCAAATAAGCCTCCAAAAATTCCTAGTTTTAATGAAACCCTAGTTAGAAAAAGGTCTCTTGCAAGATCAGTTTATTCCAAACCAAAATCCAGATTTGGGGAGCAACCATATCATGTTGATTCTGATATATTTGAAGAGAATCATTCTCATTCTTTCAGTAGGGCTTCTCCAGGTAACAAATCAGCTTCCTCTGCTGCTATGACCCCTAGGGCTCAAGCTGAAGAATATGATGATAAAGAAATTTACAAGATAGTTCAAATGAGTAAAGAGAAGCATAAGAAAGTTAAAGTTAAGTCCTTGATTGAATGGATGGGAGTTTTTTTCATTACTGGTTTTTTAGTGGCTAGCTTGACTGTTAATAAGTTGAGAAATTCATTTCTCTGGGCTTTAGAGATTTGGAAATGGTGTTTGCTTGCTACTGTGATTCTCTGTGGAATGATGGTTACTAATTGGGTTATGCATGTGATTGTTTTTATGATTGAAAGAAATTTTCTACTCAAGAAGAAAGTTCTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTGACTATTTGGTTGGCTGTGGTTCTTGTTACATGGGTGTCATTGTTCGATAGAGGGAATTATAGGATTTCGAAATCGAAGTTTGCTGGTAGGATTTTGGATGCTGTTACTTGGACTCTGTTGTCTCTTCTGATAGGGGCATTGTTGTGGTTGTTGAAGACATCTTTGCTGAAAATATTGGCTTCTAAGTTCCACATGAACCAATTTTTCGATAGAATTCAAGAATCTATTTTCCATCAGTATGTTCTACAAACCCTTTCGGGGTCGCCAGTGATAGAGGAGGCAGAAAGGATTGGGAATTCCGGCCATGTACTTGCAGGTCAAGTGAGTTTCAGAAGCAAGAAGGGAAAAGAAGCAGTGAAGAAGAAGAAGGTAATTGATATGGGAAGGATTCACCAGATGAAGAGAGAAAAAGTTTCAGCTTGGACTATGAAGGTGTTGGTTGATGCTGTTACAGGTTCGGAGTTGTCGACAATCTCACAAACACTTGATGAAAGCTACCAAAATCGTGGAGCTGAAGTTGCTGATACTGACAGTGAGATCACCAATGAGATGGAAGCCATAGCAGCCGCCTATAAAATTTTCAACAATGTTGCTCTTCCTGGAAACAATTACATAGAGGAGGAGGATCTTCTCAGATTTATGATTAAAGAAGAAGTGGATCTTGTGTTACCACTGTTCGAGGGAGCTGAGACCCGGCAAATCGACAAAAAAGCTTTAACCAACTGGGTGGTTAAGGTTTATCAAGGGAGGAAAACGCTTGCACATGCCTTGAAAGACACTAAAACAGCCGTAAAGCAATTAAATAATTTAGTGACAGCACTTCTGATAATAGTAACGGTTGTTGTGTGGCTTATGTTGATGGAAATTGCTACAACAAAAGTACTTGTCTTCCTACTATCTCAAGCTGCATTGGCAGTGTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCTCTAGTCTTTGTGTTTGTCATGCATCCGTTTGACGTCGGTGACCGTTGCGTAGTTGATGGTGTTCAGTTGTTGGTTGAAGAAATGAATATCTTGACAACAGTATTCTTGAAACTCAGCAATGAGAAGGTGTATTATCCCAACTCGGTTTTGGCGACAAAACCCATCAGCAACTATTATAGAAGCCCAGACATGAGCGACACCATAGAATTCTCGATCGGTTTTATGACACCGGTGGAGAGAATCGGGGCTATGAAAGAGAAGATAAAGAGGTATTTGGAGAAAAATCCACAACACTGGCATCCAAATCACAATGTGGTGGTGAAAGAGATTGAAGATGTGAACAAGATGAAGTTTGCTCTTTATGTCAATCACACCATGAATTTTCAAGAGTGGGGCGAGAAGAATCGTCGACGAACAGAACTTGTGATGGAATTGAAGAAGATTTTCGAAGAACTGAGGATTAACTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCCGTCGAATCTGAAACAAGCACTGCAACCCAGAAAAGATTTTAG 2229 39.21 MDENNIKASKAAGLSLQSEKENGNGGQIVLEIPSEIYSKESHDGKGHSSSVEMSQLFIPSANKPPKIPSFNETLVRKRSLARSVYSKPKSRFGEQPYHVDSDIFEENHSHSFSRASPGNKSASSAAMTPRAQAEEYDDKEIYKIVQMSKEKHKKVKVKSLIEWMGVFFITGFLVASLTVNKLRNSFLWALEIWKWCLLATVILCGMMVTNWVMHVIVFMIERNFLLKKKVLYFVHGLKKSVQVTIWLAVVLVTWVSLFDRGNYRISKSKFAGRILDAVTWTLLSLLIGALLWLLKTSLLKILASKFHMNQFFDRIQESIFHQYVLQTLSGSPVIEEAERIGNSGHVLAGQVSFRSKKGKEAVKKKKVIDMGRIHQMKREKVSAWTMKVLVDAVTGSELSTISQTLDESYQNRGAEVADTDSEITNEMEAIAAAYKIFNNVALPGNNYIEEEDLLRFMIKEEVDLVLPLFEGAETRQIDKKALTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLVTALLIIVTVVVWLMLMEIATTKVLVFLLSQAALAVFMFGNTCKNIFEALVFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLSNEKVYYPNSVLATKPISNYYRSPDMSDTIEFSIGFMTPVERIGAMKEKIKRYLEKNPQHWHPNHNVVVKEIEDVNKMKFALYVNHTMNFQEWGEKNRRRTELVMELKKIFEELRINYNLLPQTVHLFPVESETSTATQKRF 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2773254 2776118 - evm.model.ptg000002l.1187 HCH12g0472 555319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0472 742 MobiDBLite consensus disorder prediction 1 26 - -
HCH12g0472 742 MobiDBLite consensus disorder prediction 110 128 - -
HCH12g0472 742 FunFam Predicted mechanosensitive ion channel 571 620 - -
HCH12g0472 742 MobiDBLite consensus disorder prediction 10 24 - -
HCH12g0472 742 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 54 733 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER)
HCH12g0472 742 SUPERFAMILY Sm-like ribonucleoproteins 561 620 IPR010920 -
HCH12g0472 742 PIRSF Memb_At2g17000 17 742 IPR016688 -
HCH12g0472 742 Gene3D - 571 620 IPR023408 -
HCH12g0472 742 MobiDBLite consensus disorder prediction 109 132 - -
HCH12g0472 742 Pfam Mechanosensitive ion channel, beta-domain 556 621 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0472 K22048 - - csv:101217197 912.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0472 HCH-Chr12:2773254 HCH6g1377 HCH-Chr6:47698743 6.60E-148 dispersed
HCH12g0472 HCH-Chr12:2773254 HCH8g0615 HCH-Chr8:42947174 8.20E-199 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1640 . 69 534 Mechanosensitive Ion Channel Family AT4G00290 60.7 1.8e-154 542.7
HCH11g0771 . 9 724 Mechanosensitive Ion Channel Family AT5G10490 55.7 7.4e-199 690.6
HCH4g0275 . 31 692 Mechanosensitive Ion Channel Family AT5G10490 57.5 3.2e-194 675.2
HCH4g0275 . 8 688 Mechanosensitive Ion Channel Family AT1G58200 57.7 7.7e-204 707.2
HCH11g0771 . 49 696 Mechanosensitive Ion Channel Family AT1G58200 51.6 3.0e-171 599.0
HCH2g0582 . 44 911 Mechanosensitive Ion Channel Family AT1G53470 55.3 3.9e-256 881.3
HCH7g0440 . 73 847 Mechanosensitive Ion Channel Family AT1G53470 55.3 3.3e-239 825.1
HCH2g0582 . 44 906 Mechanosensitive Ion Channel Family AT3G14810 54.9 7.1e-247 850.5
HCH7g0440 . 57 846 Mechanosensitive Ion Channel Family AT3G14810 53.9 5.6e-228 787.7
HCH2g0582 . 50 911 Mechanosensitive Ion Channel Family AT1G78610 58.5 7.1e-279 956.8
HCH7g0440 . 78 847 Mechanosensitive Ion Channel Family AT1G78610 60.1 7.4e-260 893.6
HCH7g0440 . 53 851 Mechanosensitive Ion Channel Family AT2G17000 55.1 7.5e-233 803.9
HCH2g0582 . 209 907 Mechanosensitive Ion Channel Family AT2G17000 60.0 9.2e-231 797.0
HCH2g0582 . 1 648 Mechanosensitive Ion Channel Family AT2G17010 50.1 2.1e-161 566.2
HCH12g0472 . 57 727 Mechanosensitive Ion Channel Family AT5G19520 56.2 8.5e-204 707.2
HCH12g0472 . 48 727 Mechanosensitive Ion Channel Family AT5G12080 60.0 5.8e-221 764.2
HCH8g0615 . 33 725 Mechanosensitive Ion Channel Family AT5G12080 53.4 8.7e-201 697.2
HCH6g1377 . 102 673 Mechanosensitive Ion Channel Family AT5G12080 50.3 2.8e-151 532.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57