Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g0472 | ATGGATGAAAACAATATCAAAGCTTCAAAAGCTGCTGGATTAAGCTTGCAGTCTGAAAAGGAAAATGGAAATGGAGGCCAAATAGTTCTTGAAATTCCAAGTGAAATATATTCAAAAGAATCACATGATGGAAAAGGGCATTCTTCTTCTGTGGAAATGTCACAGTTGTTCATTCCAAGTGCAAATAAGCCTCCAAAAATTCCTAGTTTTAATGAAACCCTAGTTAGAAAAAGGTCTCTTGCAAGATCAGTTTATTCCAAACCAAAATCCAGATTTGGGGAGCAACCATATCATGTTGATTCTGATATATTTGAAGAGAATCATTCTCATTCTTTCAGTAGGGCTTCTCCAGGTAACAAATCAGCTTCCTCTGCTGCTATGACCCCTAGGGCTCAAGCTGAAGAATATGATGATAAAGAAATTTACAAGATAGTTCAAATGAGTAAAGAGAAGCATAAGAAAGTTAAAGTTAAGTCCTTGATTGAATGGATGGGAGTTTTTTTCATTACTGGTTTTTTAGTGGCTAGCTTGACTGTTAATAAGTTGAGAAATTCATTTCTCTGGGCTTTAGAGATTTGGAAATGGTGTTTGCTTGCTACTGTGATTCTCTGTGGAATGATGGTTACTAATTGGGTTATGCATGTGATTGTTTTTATGATTGAAAGAAATTTTCTACTCAAGAAGAAAGTTCTTTATTTTGTTCATGGGTTGAAGAAGAGTGTCCAAGTGACTATTTGGTTGGCTGTGGTTCTTGTTACATGGGTGTCATTGTTCGATAGAGGGAATTATAGGATTTCGAAATCGAAGTTTGCTGGTAGGATTTTGGATGCTGTTACTTGGACTCTGTTGTCTCTTCTGATAGGGGCATTGTTGTGGTTGTTGAAGACATCTTTGCTGAAAATATTGGCTTCTAAGTTCCACATGAACCAATTTTTCGATAGAATTCAAGAATCTATTTTCCATCAGTATGTTCTACAAACCCTTTCGGGGTCGCCAGTGATAGAGGAGGCAGAAAGGATTGGGAATTCCGGCCATGTACTTGCAGGTCAAGTGAGTTTCAGAAGCAAGAAGGGAAAAGAAGCAGTGAAGAAGAAGAAGGTAATTGATATGGGAAGGATTCACCAGATGAAGAGAGAAAAAGTTTCAGCTTGGACTATGAAGGTGTTGGTTGATGCTGTTACAGGTTCGGAGTTGTCGACAATCTCACAAACACTTGATGAAAGCTACCAAAATCGTGGAGCTGAAGTTGCTGATACTGACAGTGAGATCACCAATGAGATGGAAGCCATAGCAGCCGCCTATAAAATTTTCAACAATGTTGCTCTTCCTGGAAACAATTACATAGAGGAGGAGGATCTTCTCAGATTTATGATTAAAGAAGAAGTGGATCTTGTGTTACCACTGTTCGAGGGAGCTGAGACCCGGCAAATCGACAAAAAAGCTTTAACCAACTGGGTGGTTAAGGTTTATCAAGGGAGGAAAACGCTTGCACATGCCTTGAAAGACACTAAAACAGCCGTAAAGCAATTAAATAATTTAGTGACAGCACTTCTGATAATAGTAACGGTTGTTGTGTGGCTTATGTTGATGGAAATTGCTACAACAAAAGTACTTGTCTTCCTACTATCTCAAGCTGCATTGGCAGTGTTCATGTTTGGAAACACATGCAAGAATATATTTGAAGCTCTAGTCTTTGTGTTTGTCATGCATCCGTTTGACGTCGGTGACCGTTGCGTAGTTGATGGTGTTCAGTTGTTGGTTGAAGAAATGAATATCTTGACAACAGTATTCTTGAAACTCAGCAATGAGAAGGTGTATTATCCCAACTCGGTTTTGGCGACAAAACCCATCAGCAACTATTATAGAAGCCCAGACATGAGCGACACCATAGAATTCTCGATCGGTTTTATGACACCGGTGGAGAGAATCGGGGCTATGAAAGAGAAGATAAAGAGGTATTTGGAGAAAAATCCACAACACTGGCATCCAAATCACAATGTGGTGGTGAAAGAGATTGAAGATGTGAACAAGATGAAGTTTGCTCTTTATGTCAATCACACCATGAATTTTCAAGAGTGGGGCGAGAAGAATCGTCGACGAACAGAACTTGTGATGGAATTGAAGAAGATTTTCGAAGAACTGAGGATTAACTACAATCTCCTGCCTCAAACAGTTCATCTCTTCCCCGTCGAATCTGAAACAAGCACTGCAACCCAGAAAAGATTTTAG | 2229 | 39.21 | MDENNIKASKAAGLSLQSEKENGNGGQIVLEIPSEIYSKESHDGKGHSSSVEMSQLFIPSANKPPKIPSFNETLVRKRSLARSVYSKPKSRFGEQPYHVDSDIFEENHSHSFSRASPGNKSASSAAMTPRAQAEEYDDKEIYKIVQMSKEKHKKVKVKSLIEWMGVFFITGFLVASLTVNKLRNSFLWALEIWKWCLLATVILCGMMVTNWVMHVIVFMIERNFLLKKKVLYFVHGLKKSVQVTIWLAVVLVTWVSLFDRGNYRISKSKFAGRILDAVTWTLLSLLIGALLWLLKTSLLKILASKFHMNQFFDRIQESIFHQYVLQTLSGSPVIEEAERIGNSGHVLAGQVSFRSKKGKEAVKKKKVIDMGRIHQMKREKVSAWTMKVLVDAVTGSELSTISQTLDESYQNRGAEVADTDSEITNEMEAIAAAYKIFNNVALPGNNYIEEEDLLRFMIKEEVDLVLPLFEGAETRQIDKKALTNWVVKVYQGRKTLAHALKDTKTAVKQLNNLVTALLIIVTVVVWLMLMEIATTKVLVFLLSQAALAVFMFGNTCKNIFEALVFVFVMHPFDVGDRCVVDGVQLLVEEMNILTTVFLKLSNEKVYYPNSVLATKPISNYYRSPDMSDTIEFSIGFMTPVERIGAMKEKIKRYLEKNPQHWHPNHNVVVKEIEDVNKMKFALYVNHTMNFQEWGEKNRRRTELVMELKKIFEELRINYNLLPQTVHLFPVESETSTATQKRF | 742 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2773254 | 2776118 | - | evm.model.ptg000002l.1187 | HCH12g0472 | 555319 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g0472 | 742 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| HCH12g0472 | 742 | MobiDBLite | consensus disorder prediction | 110 | 128 | - | - | |
| HCH12g0472 | 742 | FunFam | Predicted mechanosensitive ion channel | 571 | 620 | - | - | |
| HCH12g0472 | 742 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - | |
| HCH12g0472 | 742 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 54 | 733 | IPR016688 | GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)|GO:0050982(PANTHER) | |
| HCH12g0472 | 742 | SUPERFAMILY | Sm-like ribonucleoproteins | 561 | 620 | IPR010920 | - | |
| HCH12g0472 | 742 | PIRSF | Memb_At2g17000 | 17 | 742 | IPR016688 | - | |
| HCH12g0472 | 742 | Gene3D | - | 571 | 620 | IPR023408 | - | |
| HCH12g0472 | 742 | MobiDBLite | consensus disorder prediction | 109 | 132 | - | - | |
| HCH12g0472 | 742 | Pfam | Mechanosensitive ion channel, beta-domain | 556 | 621 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0472 | HCH-Chr12:2773254 | HCH6g1377 | HCH-Chr6:47698743 | 6.60E-148 | dispersed | |
| HCH12g0472 | HCH-Chr12:2773254 | HCH8g0615 | HCH-Chr8:42947174 | 8.20E-199 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g0472 | K22048 | - | csv:101217197 | 912.138 |