Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0478 ATGAACTTGGATGCAGCAGAAGATGAATCAACTTCTGAGATTCATATTCCAGCAGAAATTGATTGGGATATGTTAGATAAATCTAAGTTCTTTTTCCTTGGTGCTGCTTTGTTTTCTGGTGTAAACACTGCCCTTTATCCTATTGTTGTTTTAAAGACTAGATTACAAGTTTCAGCAGCTAAGCTATCTTGCTCTAAGATGTCTTATTCTATTATGAGGCACGAGGGTTTAAGAGGGTTTTACAGAGGTTTTGGTACCTCTTTAATGGGAACGGTCCCGGCTCGAGCTTTTTACATGGCCGCCCTTGAAGTTACCAAGAGTGGTGTTGGAAGTGCAACTGTTAGATTAGGCTTTTCGGATACTACGGCGATGGCGATTGCTAATGGTGCTGCAGGAATGAGCTCGGCCATGGCTGCACAATTGGTTTGGACCCCAATTGATGTTGTAAGTCAAAGACTAATGGTCCAAGGTTGCTCCAAAAACAGTGTTTCTAATCTCAATTCGTGTGTTTATAAAAACGGTATCGACGCGTTTAGAAAGATTGTTTATGCAGATGGTTTGCGAGGATTATATAGGGGATTTGGGATTTCAATATTGACATACGCACCATCAAATGCAGTTTGGTGGGCTTCTTACTCTGTAGCTCACCGACTCATTTGGAGTGGTTTTGGCTACTATAGAAGTAAGGAGGATGAAAATTGCATCAATGGTGGTGGTTACGGCTTTAAAGCTGATTCTAAGGCAATGGTGGCAGTTCAGGGATTGAGTGCAGCCATGGCAAGTGGGGTTTCAGCGATCATAACTATGCCATTGGATACTATCAAGACTAGATTGCAAGTTTTGGATGGAAAGGATAATGGCCAAAGACGGCCTCTAACGGCTTTGCAGACAGTAAGGAAACTGTTTAATGAAGGTGGATTGAATGCTTGTTACCGAGGCTTGGGGCCAAGGTGGGCTTCAATGGCCATCTCGGCCACCACGATGATCACAACCTACGAGTTTCTCAAACGGCTATCGGCTAAGAATCCAAATTGTTTGAGCTGA 1044 43.1 MNLDAAEDESTSEIHIPAEIDWDMLDKSKFFFLGAALFSGVNTALYPIVVLKTRLQVSAAKLSCSKMSYSIMRHEGLRGFYRGFGTSLMGTVPARAFYMAALEVTKSGVGSATVRLGFSDTTAMAIANGAAGMSSAMAAQLVWTPIDVVSQRLMVQGCSKNSVSNLNSCVYKNGIDAFRKIVYADGLRGLYRGFGISILTYAPSNAVWWASYSVAHRLIWSGFGYYRSKEDENCINGGGYGFKADSKAMVAVQGLSAAMASGVSAIITMPLDTIKTRLQVLDGKDNGQRRPLTALQTVRKLFNEGGLNACYRGLGPRWASMAISATTMITTYEFLKRLSAKNPNCLS 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2801697 2802740 - evm.model.ptg000002l.1181 HCH12g0478 555325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0478 347 Pfam Mitochondrial carrier protein 41 108 IPR018108 -
HCH12g0478 347 Pfam Mitochondrial carrier protein 251 340 IPR018108 -
HCH12g0478 347 Pfam Mitochondrial carrier protein 126 219 IPR018108 -
HCH12g0478 347 SUPERFAMILY Mitochondrial carrier 23 335 IPR023395 -
HCH12g0478 347 PRINTS Mitochondrial carrier protein signature 40 58 IPR002067 GO:0055085(InterPro)
HCH12g0478 347 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085(InterPro)
HCH12g0478 347 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085(InterPro)
HCH12g0478 347 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 6 343 - -
HCH12g0478 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 248 338 IPR018108 -
HCH12g0478 347 Gene3D Mitochondrial carrier domain 29 344 IPR023395 -
HCH12g0478 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
HCH12g0478 347 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 218 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0478 HCH-Chr12:2801697 HCH13g0668 HCH-Chr13:5330930 1.40E-71 dispersed
HCH12g0478 HCH-Chr12:2801697 HCH4g1500 HCH-Chr4:11418458 3.40E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0478 K15121 - csv:101213436 608.986