Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0485 ATGACAGAGATGGAAGGGATGTTATCTGATCATGTAAATAAGGTTTCGAATGAGCCAAATGAGAGCGGTGTTGAGGATTGTATTAGTAAATGTTCAGAAGATGACAGCACTGTGAGAACAGTTTTGGCTCCTGATATGAGAATAGGAGGGAATCCTTTTATCTCTGATGTGGTACTGCAAAACAAAAGCAATTGGGTTGTTCCTGATGAGGCAATAGCACGGGAGAGCGAGGAAGATGATTCTGTATCAATGGATGGTGATTATAATATTGATTCTATTTCAGTGGTGAGTGACAATAGTAGCATATGTGGAGAGGAGTATGTGGTCTTTGAAGCGTCTTCTGAAGTCGGAGGTCTAAAATCTTTGGCCTTTGAGGAGAGCATTTGCACATTAAATAGTGTGTCTGGGTCATCCAACCTGCCAGAGTCAAATATTGAGAAAGAGAGTATGCCTCTTGTGAGCAGAACTGTCAGTCGCAGTGTTTTTGAGGTGGAGTATGTACCTCTGTGGGGTTTCACGTCTATTTGTGGAAGGAGGCCCGAGATGGAAGATTCGATTGCAACTATTCCTCGGTTGTTGAAAATTCCTATCGAGATGCTGATTGGTGACCATGTCCTTAATGGTATGAGCAAATGTTTATCTCATCAAACTGTTCATTTCTTTGGGGTCTACGATGGCCATGGTGGTTCTCAGGTTGCAAACTACTGTCGTGATAGGTTCCATTTTGCTTTAGCTGAGGAGATAGAATTTGTTAAGGAAGGTCTGGTTTTAGGAGCTGTCAAGGACAGTTGCCAAGAGCAATGGAAAAGGACATTTGCCAACTGCTTTCTTAAAGTTGATGCTGAAGTTGGAGGAAAAGCCAATGTAGTTCCCATTGCACCAGAAACTGTTGGGTCCACCGCCGTTGTTGCCATCATTTGTTCATCGCATATTATCGTTGCGAATTGTGGAGATTCAAGAGCAGTTTTATGTCGTGGGAAAGAACCTATGCCATTGTCAGTGGATCATAAACCAAATAGAGAAGATGAATACGCAAGAATTGAAGCTGCTGGAGGCAAGGTCATTCAATGGAATGGACATCGGGTTTTCGGTGTTCTTGCGATGTCTAGATCAATTGGTGATAGATATTTGAAACCATGGATAATTCCTGAACCAGAAGTGACCTTTCTTCCTCGAGCCAAGGAAGATGAATGTCTCATCGTAGCCAGTGATGGTTTATGGGATGTCATGTCAAATGAAGAAGTATGCGACCTTGCACGGAGGCGAATACTTCTCTGGCACAAAAAGAATGGTATTACGCTTACTCCAGAAAGAGATGGAATTGATCCTGCAGCTCAAGCTGCAGCAGAGTACCTCTCAAACCGCGCTCTACAAAAGGGGAGTAAGGACAACATCACTGTGATTGTGGTGGATTTGAAAGCTCAAAGGAAGTTTAAGACCAAAACGTGA 1449 42.93 MTEMEGMLSDHVNKVSNEPNESGVEDCISKCSEDDSTVRTVLAPDMRIGGNPFISDVVLQNKSNWVVPDEAIARESEEDDSVSMDGDYNIDSISVVSDNSSICGEEYVVFEASSEVGGLKSLAFEESICTLNSVSGSSNLPESNIEKESMPLVSRTVSRSVFEVEYVPLWGFTSICGRRPEMEDSIATIPRLLKIPIEMLIGDHVLNGMSKCLSHQTVHFFGVYDGHGGSQVANYCRDRFHFALAEEIEFVKEGLVLGAVKDSCQEQWKRTFANCFLKVDAEVGGKANVVPIAPETVGSTAVVAIICSSHIIVANCGDSRAVLCRGKEPMPLSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVTFLPRAKEDECLIVASDGLWDVMSNEEVCDLARRRILLWHKKNGITLTPERDGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKTKT 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2838184 2840148 - evm.model.ptg000002l.1174 HCH12g0485 555332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0485 482 CDD PP2Cc 171 472 IPR001932 -
HCH12g0485 482 PANTHER PROTEIN PHOSPHATASE 126 471 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
HCH12g0485 482 ProSiteProfiles PPM-type phosphatase domain profile. 169 472 IPR001932 -
HCH12g0485 482 SUPERFAMILY PP2C-like 160 473 IPR036457 -
HCH12g0485 482 Pfam Protein phosphatase 2C 197 465 IPR001932 -
HCH12g0485 482 ProSitePatterns PPM-type phosphatase domain signature. 220 228 IPR000222 GO:0043169(InterPro)
HCH12g0485 482 FunFam Protein phosphatase 2C 16 157 482 - -
HCH12g0485 482 Gene3D - 156 482 IPR036457 -
HCH12g0485 482 SMART PP2C_4 157 470 IPR001932 -
HCH12g0485 482 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0485 HCH-Chr12:2838184 HCH8g0706 HCH-Chr8:43775944 2.90E-72 dispersed
HCH12g0485 HCH-Chr12:2838184 HCH4g0520 HCH-Chr4:3411272 7.70E-182 wgd
HCH12g0485 HCH-Chr12:2838184 HCH6g0091 HCH-Chr6:1159140 5.80E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0485 K14497 - cit:102628329 653.284