Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0486 ATGGAGGATCGAGAGGAGGAAGGGAAACCGGAAGAAGAGGTACTAGGTTCCAGTTTAACGATGGAGAAAGTGGCGGCTGCTAAGAAATTTATAGAGAATCATTACAAAGCTCAGATGAAAAACATTCAAGAACGGAAAGAGAGACGGTGGATGCTTGAAAGAAAGTTAGCTTCCTCAGATGTGCCTAAGGAAGAGCAAATCAATCTTATCAAAGATTTAGAGCGGAAAGAAACTGAGTTTATGAGACTCAAAAGGCACAAGATATGTGTTGATGACTTTGAGCTTTTAACCATCATCGGGAGGGGGGCTTTTGGTGAGGTTCGATTATGCCGTGAGAAGAAATCTGGCGACATATATGCCATGAAAAAGTTGAAAAAATCTGAAATGCTTATGAGAGGACAGGTGGAACATGTTAGAGCAGAAAGGAATTTGTTAGCGGAAGTTGCCAGCCATTGTATAGTGAAACTTTATTACTCATTCCAGGATGCCGAGTACTTATATTTGATCATGGAATATCTGCCAGGTGGAGATATGATGACTTTGCTAATGAGGGAAGACACATTAACTGAAAATGTGTCTAAATTTTACATTGCACAAAGTGTTCTTGCAATAGAATCTATCCACAGGCACCACTATATTCACAGGGATATTAAACCTGATAATCTTCTTTTGGACAAATATGGTCACATGAAGCTTTCTGATTTTGGCCTGTGTAAGCCCCTGGATACTTTAACTCTATCAGCGCTGCATGAAAATAAAACGATGGATGATGAAACTTTGGCAGAACCAATGGATATTGACGACAATAAGAGTAGTTGGAGGAGTCCCAGTGAACAGCTACATCATTGGCAAATGAACCGAAGGAAGTTGGCATTTTCAACAGTTGGAACACCAGATTATATTGCTCCAGAAGTATTACTTAAAAAAGGATATGGGATGGAATGTGACTGGTGGTCTCTGGGTGCAATAATGTATGAAATGCTCGTAGGCTACCCTCCATTTTACTCCGATGACCCAATCACCACATGCAGAAAGATTGTTCATTGGAAAAATCACTTGAAGTTTCCAGAAGATGCAAAGTTGACGCATGAAGCAAAGGATCTCATCTGTAGGTTGCTTTGTGACGTTGAACATAGACTTGGTACTGGAGGAGCACACCAAATAAAAGCTCATCCTTGGTTCAAAGATGTTGTCTGGGATAGACTATATGAAATGGAGGCAGCATTTAAGCCTGAAGTCAATGGAGAGCTCGATACTCAGAACTTTATGAAGTTTGATGAATTGGATCCTCCTATACCAGGAAAACGTGGCTCAGGACCCTCCAGGAAGATGCTATTGACTCCCAAAGATCTCAGCTTTGTTGGGTATACGTACAAGAACTTTGATGCTGTCAAAGGGCTTCATGGATCACTTGATTCTCAGAGACCGTCAATGGAACTGCCTTCAATAGATGTATTAAATGGGTCTGGAGGAGACTACACAACTGAACTATTAGCCAAGGAGGCTGAAGTGCAGATGCTAGCATTATCGGGAGATCCCATGTTACCATAA 1551 41.13 MEDREEEGKPEEEVLGSSLTMEKVAAAKKFIENHYKAQMKNIQERKERRWMLERKLASSDVPKEEQINLIKDLERKETEFMRLKRHKICVDDFELLTIIGRGAFGEVRLCREKKSGDIYAMKKLKKSEMLMRGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLMREDTLTENVSKFYIAQSVLAIESIHRHHYIHRDIKPDNLLLDKYGHMKLSDFGLCKPLDTLTLSALHENKTMDDETLAEPMDIDDNKSSWRSPSEQLHHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPITTCRKIVHWKNHLKFPEDAKLTHEAKDLICRLLCDVEHRLGTGGAHQIKAHPWFKDVVWDRLYEMEAAFKPEVNGELDTQNFMKFDELDPPIPGKRGSGPSRKMLLTPKDLSFVGYTYKNFDAVKGLHGSLDSQRPSMELPSIDVLNGSGGDYTTELLAKEAEVQMLALSGDPMLP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2843049 2849543 - evm.model.ptg000002l.1173 HCH12g0486 555333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0486 516 FunFam Non-specific serine/threonine protein kinase 293 412 - -
HCH12g0486 516 SMART pkinase_C_6 395 460 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0486 516 CDD MobB_NDR_LATS-like 27 88 - -
HCH12g0486 516 Gene3D Transferase(Phosphotransferase) domain 1 177 243 - -
HCH12g0486 516 Gene3D Transferase(Phosphotransferase) domain 1 293 414 - -
HCH12g0486 516 CDD STKc_NDR_like 91 459 - -
HCH12g0486 516 SMART serkin_6 93 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0486 516 FunFam Non-specific serine/threonine protein kinase 177 244 - -
HCH12g0486 516 Pfam Protein kinase C terminal domain 413 458 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0486 516 FunFam Non-specific serine/threonine protein kinase 413 423 - -
HCH12g0486 516 FunFam Non-specific serine/threonine protein kinase 54 176 - -
HCH12g0486 516 ProSitePatterns Protein kinases ATP-binding region signature. 99 122 IPR017441 GO:0005524(InterPro)
HCH12g0486 516 Gene3D Phosphorylase Kinase; domain 1 56 176 - -
HCH12g0486 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0486 516 Pfam Protein kinase domain 285 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0486 516 Pfam Protein kinase domain 94 242 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0486 516 SUPERFAMILY Protein kinase-like (PK-like) 77 432 IPR011009 -
HCH12g0486 516 ProSiteProfiles Protein kinase domain profile. 93 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0486 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 26 462 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
HCH12g0486 516 ProSiteProfiles AGC-kinase C-terminal domain profile. 395 468 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0486 HCH-Chr12:2843049 HCH3g0004 HCH-Chr3:57801 1.30E-65 dispersed
HCH14g1147 HCH-Chr14:38320155 HCH12g0486 HCH-Chr12:2843049 1.00E-182 transposed
HCH4g0643 HCH-Chr4:4208583 HCH12g0486 HCH-Chr12:2843049 1.00E-163 transposed
HCH5g0741 HCH-Chr5:5399767 HCH12g0486 HCH-Chr12:2843049 7.10E-67 transposed
HCH5g1322 HCH-Chr5:50162037 HCH12g0486 HCH-Chr12:2843049 1.30E-180 transposed
HCH6g1494 HCH-Chr6:48512087 HCH12g0486 HCH-Chr12:2843049 3.80E-185 transposed
HCH12g0486 HCH-Chr12:2843049 HCH8g0627 HCH-Chr8:43070543 2.50E-223 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81111 PF00069 Pkinase 1.50E-41 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0486 K08790 - csv:101212228 980.319