Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0495 ATGGGTGGTTCTGGGAAATGGATGAAAGCTCTTATAGGTCACAAAAAGTCTGAAAAAGAAGACCATGAGAAATTGGGCAGTAAGACTAAGAAATGGAGGCTATGGAGAAGCTCATCAGGTGATTTAAGCTCTGCATGGAAGGGTTACAAAGGGTCACATAAAGCAGCTTCTGAGGGGTCTGATTCCCCACGAGCAGGAGTTGCTGATTCTTTTACTGCTGCAGTTGCCACTGTTCTTCGTGCTCCACCTAAAGATTTCAGGGTTGTTAGGCAAGAATGGGCTGCAATCCGAATCCAAACCGCTTTTCGCGGTTTCTTGTCTAGAAGAGCTCTTAAGGCCTTGAAAGGAGTGGTGAGGCTTCAAGCTCTAGTTCGAGGTCGGCTGGTAAGGAAGCAGGCTGCTGTCACATTGAGGTGCATGCAGGCTCTGGTTCGAGTTCAAGCACGAGTCAGGGCTCGTCGCGTGAGAATGTCGGTGGAGGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGTAGCAAGGCTGATCAATTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGAACATTGGAAGATATTAAAGCTAAGTTACAAATGAGGCAAGATGGAGCCTTTAAGAGGGAGAGAGCAATTGCATACTCTATTGTTCAAAAGCAACTGAAGTCAACCCCGAGTTCGATTTCAAGAACAAATGCTTCAAATTACGTCCTCAAGAATTATGAACTTGACAAGAACAATTGGGGATGGAGTTGGTTAGAGAGGTGGATGGCAGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCCCGCTCTGATTCCTTTGAAGCAACTCCACCTTCAAAGAGCTATACAGAGTCTGTTGTGTCTAAACATTCCAAAGGGTCTGAACCAAGTTCAGTGAAAGTTAGAAAGAACAATGTATCAACTAGGATTTCTGCTAAGCCTCCCTCAACTGGTCAAGCCGCACGTTCTTGTTCTAGCCCGAGTTCTGATTTCTGGTATGACGAGAGCTCAGCTTCATCTTCGATCTGCACCTCGACAACTCCAGTGTCAGGAAATGGTGTTTTGGCTGTCGATAGAACAGAGAATAGCTGTAACAGTAGGCCCAGTTACATGAACCTTACAGAGTCGACTAAGGCCAAGCAGAAAACATATGGTTACTCGTCACACCGAGTTCAAAGACAGTCCATGGATGAGTTTCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCCAAAAGTAGTGCTGGCTCTGATACTTCAGCCAATCCTTTCAAGTCATTGATGCTGCCAACACGGTTGGATAGGAATGGAACAAAGCTAAGGTAA 1341 45.94 MGGSGKWMKALIGHKKSEKEDHEKLGSKTKKWRLWRSSSGDLSSAWKGYKGSHKAASEGSDSPRAGVADSFTAAVATVLRAPPKDFRVVRQEWAAIRIQTAFRGFLSRRALKALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADQLKQAEEGWCDSKGTLEDIKAKLQMRQDGAFKRERAIAYSIVQKQLKSTPSSISRTNASNYVLKNYELDKNNWGWSWLERWMAAKPWETRLMEQSRSDSFEATPPSKSYTESVVSKHSKGSEPSSVKVRKNNVSTRISAKPPSTGQAARSCSSPSSDFWYDESSASSSICTSTTPVSGNGVLAVDRTENSCNSRPSYMNLTESTKAKQKTYGYSSHRVQRQSMDEFQFLQKSAAFSNGDSKSSAGSDTSANPFKSLMLPTRLDRNGTKLR 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2906074 2908042 + evm.model.ptg000002l.1164 HCH12g0495 555342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0495 446 Coils Coil 164 184 - -
HCH12g0495 446 MobiDBLite consensus disorder prediction 1 28 - -
HCH12g0495 446 SMART iq_5 90 112 IPR000048 GO:0005515(InterPro)
HCH12g0495 446 SMART iq_5 113 134 IPR000048 GO:0005515(InterPro)
HCH12g0495 446 MobiDBLite consensus disorder prediction 411 431 - -
HCH12g0495 446 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515(InterPro)
HCH12g0495 446 Pfam IQ calmodulin-binding motif 93 112 IPR000048 GO:0005515(InterPro)
HCH12g0495 446 ProSiteProfiles IQ motif profile. 115 142 - -
HCH12g0495 446 MobiDBLite consensus disorder prediction 11 28 - -
HCH12g0495 446 MobiDBLite consensus disorder prediction 411 446 - -
HCH12g0495 446 MobiDBLite consensus disorder prediction 272 328 - -
HCH12g0495 446 PANTHER IQ-DOMAIN 5-RELATED 5 400 - -
HCH12g0495 446 ProSiteProfiles IQ motif profile. 91 119 - -
HCH12g0495 446 FunFam IQ-domain 11 90 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0495 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0260 HCH-Chr11:2400309 HCH12g0495 HCH-Chr12:2906074 9.90E-27 dispersed
HCH12g0145 HCH-Chr12:780979 HCH12g0495 HCH-Chr12:2906074 1.10E-10 dispersed
HCH12g0495 HCH-Chr12:2906074 HCH13g0419 HCH-Chr13:2901832 3.30E-30 dispersed
HCH3g0272 HCH-Chr3:1724809 HCH12g0495 HCH-Chr12:2906074 2.50E-12 transposed
HCH8g0320 HCH-Chr8:25360599 HCH12g0495 HCH-Chr12:2906074 1.20E-43 transposed
HCH12g0495 HCH-Chr12:2906074 HCH4g0529 HCH-Chr4:3451552 9.20E-105 wgd
HCH12g0495 HCH-Chr12:2906074 HCH4g1489 HCH-Chr4:11277810 6.10E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0657 . 101 278 IQD Protein Family AT3G09710 55.8 2.3e-50 196.8
HCH13g0419 . 1 471 IQD Protein Family AT3G52290 55.7 3.1e-105 379.0
HCH8g0320 . 1 410 IQD Protein Family AT3G22190 55.8 2.5e-91 332.8
HCH12g0495 . 1 440 IQD Protein Family AT2G26180 58.8 4.0e-118 421.8
HCH14g0967 . 1 279 IQD Protein Family AT2G33990 50.5 2.8e-61 232.3
HCH6g0649 . 44 222 IQD Protein Family AT2G33990 53.9 2.1e-48 189.5
HCH6g0649 . 47 257 IQD Protein Family AT3G15050 56.3 1.3e-58 223.4
HCH10g0074 . 1 546 IQD Protein Family AT3G59690 52.3 2.3e-107 386.3
HCH13g1014 . 1 495 IQD Protein Family AT4G00820 54.5 4.5e-122 435.3
HCH7g1783 . 1 512 IQD Protein Family AT4G00820 53.0 1.0e-121 434.1
HCH7g1783 . 1 512 IQD Protein Family AT1G01110 51.8 8.3e-121 431.0
HCH13g1014 . 1 495 IQD Protein Family AT1G01110 52.4 1.4e-120 430.3
HCH4g1441 . 1 385 IQD Protein Family AT3G16490 54.5 1.4e-77 287.0
HCH5g1306 . 1 380 IQD Protein Family AT3G16490 53.2 1.2e-71 267.3
HCH8g0696 . 1 397 IQD Protein Family AT3G16490 52.1 3.2e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39