Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g0495 | ATGGGTGGTTCTGGGAAATGGATGAAAGCTCTTATAGGTCACAAAAAGTCTGAAAAAGAAGACCATGAGAAATTGGGCAGTAAGACTAAGAAATGGAGGCTATGGAGAAGCTCATCAGGTGATTTAAGCTCTGCATGGAAGGGTTACAAAGGGTCACATAAAGCAGCTTCTGAGGGGTCTGATTCCCCACGAGCAGGAGTTGCTGATTCTTTTACTGCTGCAGTTGCCACTGTTCTTCGTGCTCCACCTAAAGATTTCAGGGTTGTTAGGCAAGAATGGGCTGCAATCCGAATCCAAACCGCTTTTCGCGGTTTCTTGTCTAGAAGAGCTCTTAAGGCCTTGAAAGGAGTGGTGAGGCTTCAAGCTCTAGTTCGAGGTCGGCTGGTAAGGAAGCAGGCTGCTGTCACATTGAGGTGCATGCAGGCTCTGGTTCGAGTTCAAGCACGAGTCAGGGCTCGTCGCGTGAGAATGTCGGTGGAGGGGCAGGCTGTGCAGCAATTGCTTAATGAACATCGTAGCAAGGCTGATCAATTGAAGCAAGCTGAGGAAGGTTGGTGTGATAGCAAAGGAACATTGGAAGATATTAAAGCTAAGTTACAAATGAGGCAAGATGGAGCCTTTAAGAGGGAGAGAGCAATTGCATACTCTATTGTTCAAAAGCAACTGAAGTCAACCCCGAGTTCGATTTCAAGAACAAATGCTTCAAATTACGTCCTCAAGAATTATGAACTTGACAAGAACAATTGGGGATGGAGTTGGTTAGAGAGGTGGATGGCAGCGAAGCCATGGGAGACGAGGTTGATGGAACAATCCCGCTCTGATTCCTTTGAAGCAACTCCACCTTCAAAGAGCTATACAGAGTCTGTTGTGTCTAAACATTCCAAAGGGTCTGAACCAAGTTCAGTGAAAGTTAGAAAGAACAATGTATCAACTAGGATTTCTGCTAAGCCTCCCTCAACTGGTCAAGCCGCACGTTCTTGTTCTAGCCCGAGTTCTGATTTCTGGTATGACGAGAGCTCAGCTTCATCTTCGATCTGCACCTCGACAACTCCAGTGTCAGGAAATGGTGTTTTGGCTGTCGATAGAACAGAGAATAGCTGTAACAGTAGGCCCAGTTACATGAACCTTACAGAGTCGACTAAGGCCAAGCAGAAAACATATGGTTACTCGTCACACCGAGTTCAAAGACAGTCCATGGATGAGTTTCAATTCCTTCAGAAGTCAGCAGCTTTCTCAAATGGGGATTCCAAAAGTAGTGCTGGCTCTGATACTTCAGCCAATCCTTTCAAGTCATTGATGCTGCCAACACGGTTGGATAGGAATGGAACAAAGCTAAGGTAA | 1341 | 45.94 | MGGSGKWMKALIGHKKSEKEDHEKLGSKTKKWRLWRSSSGDLSSAWKGYKGSHKAASEGSDSPRAGVADSFTAAVATVLRAPPKDFRVVRQEWAAIRIQTAFRGFLSRRALKALKGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSVEGQAVQQLLNEHRSKADQLKQAEEGWCDSKGTLEDIKAKLQMRQDGAFKRERAIAYSIVQKQLKSTPSSISRTNASNYVLKNYELDKNNWGWSWLERWMAAKPWETRLMEQSRSDSFEATPPSKSYTESVVSKHSKGSEPSSVKVRKNNVSTRISAKPPSTGQAARSCSSPSSDFWYDESSASSSICTSTTPVSGNGVLAVDRTENSCNSRPSYMNLTESTKAKQKTYGYSSHRVQRQSMDEFQFLQKSAAFSNGDSKSSAGSDTSANPFKSLMLPTRLDRNGTKLR | 446 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2906074 | 2908042 | + | evm.model.ptg000002l.1164 | HCH12g0495 | 555342 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g0495 | 446 | Coils | Coil | 164 | 184 | - | - | |
| HCH12g0495 | 446 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| HCH12g0495 | 446 | SMART | iq_5 | 90 | 112 | IPR000048 | GO:0005515(InterPro) | |
| HCH12g0495 | 446 | SMART | iq_5 | 113 | 134 | IPR000048 | GO:0005515(InterPro) | |
| HCH12g0495 | 446 | MobiDBLite | consensus disorder prediction | 411 | 431 | - | - | |
| HCH12g0495 | 446 | Pfam | IQ calmodulin-binding motif | 115 | 132 | IPR000048 | GO:0005515(InterPro) | |
| HCH12g0495 | 446 | Pfam | IQ calmodulin-binding motif | 93 | 112 | IPR000048 | GO:0005515(InterPro) | |
| HCH12g0495 | 446 | ProSiteProfiles | IQ motif profile. | 115 | 142 | - | - | |
| HCH12g0495 | 446 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
| HCH12g0495 | 446 | MobiDBLite | consensus disorder prediction | 411 | 446 | - | - | |
| HCH12g0495 | 446 | MobiDBLite | consensus disorder prediction | 272 | 328 | - | - | |
| HCH12g0495 | 446 | PANTHER | IQ-DOMAIN 5-RELATED | 5 | 400 | - | - | |
| HCH12g0495 | 446 | ProSiteProfiles | IQ motif profile. | 91 | 119 | - | - | |
| HCH12g0495 | 446 | FunFam | IQ-domain 11 | 90 | 141 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH11g0260 | HCH-Chr11:2400309 | HCH12g0495 | HCH-Chr12:2906074 | 9.90E-27 | dispersed | |
| HCH12g0145 | HCH-Chr12:780979 | HCH12g0495 | HCH-Chr12:2906074 | 1.10E-10 | dispersed | |
| HCH12g0495 | HCH-Chr12:2906074 | HCH13g0419 | HCH-Chr13:2901832 | 3.30E-30 | dispersed | |
| HCH3g0272 | HCH-Chr3:1724809 | HCH12g0495 | HCH-Chr12:2906074 | 2.50E-12 | transposed | |
| HCH8g0320 | HCH-Chr8:25360599 | HCH12g0495 | HCH-Chr12:2906074 | 1.20E-43 | transposed | |
| HCH12g0495 | HCH-Chr12:2906074 | HCH4g0529 | HCH-Chr4:3451552 | 9.20E-105 | wgd | |
| HCH12g0495 | HCH-Chr12:2906074 | HCH4g1489 | HCH-Chr4:11277810 | 6.10E-56 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g0495 | - | - | - | 0.0 |