Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g0496 | ATGGATGATTTTGTTCATGCAGTGCTGGCGTCGGCGACACCGAGCTTCCCTGTGGGTGCAATATTATTCACGGTGATCGGCGTTGTGGCCGGAGTTGTGGTGTATTTATATGGACCATACTGGGGTGTGAGAAAGGTACCCGGTCCACCAACTCCTCCACTGGTTGGACACCTTCCCTTGCTGGCTAAGTACGGCCCAGATGTTTTCTCTGTCCTTGCCAAGCAATATGGTCCTATTTTCAGGTTTCATATGGGTAGGCAACCATTGATAATTATAGCAGACCCAGAGCTTTGTAAAGAAGTTGGTATTAAAAAATTCAAGGACATCCCAAATAGAAGTGTTCCATCTCCAATCTCAGCTTCTCCTCTGCATCAGAAGGGTCTTTTCTTCACAAGGGATACGAGATGGTCAACAATGCGAAACACCATATTATCGGTCTATCAGCCTTCCCATCTAGCGAGATTAATACCCACTATGCAATCAATCATTGAATCTGCAACTCAAAGTCTCCATTCATCCATTGAAGAAGACATTACTTTCTCCAATCTCTCCCTCAAATTGACCACTGATGTGATTGGAACAGCGGCCTTTGGTGTCAACTTCGGCCTCTCTAATCCGCAAGCAACCAGAGCCTCTGCTGGTGAAATCAATGGTCAAGACGACAAAAATGATGAAGTTTCAGACTTCATCAATCAACATATCTACTCAACAACGCAGCTAAAGATGGATTTATCAGGTTCCTTCTCAATAATACTGGGATTACTTGTCCCCGTACTCCAAGAACCATTTAGACATATCCTAAAAAGAATACCATTCACCATGGACTGGAAAGTTGAGCGGACAAATCAGAAGTTAAGTGGTCGGCTTGATGAGATTGTGGAGAAGAGAATGAATTGCAACGATCGAGGTTCAAAAGACTTCTTATCACTCATTCTGAGGGCAAGGGAATCAGAGACAGTATCAAGGAATGTTTTCACCCCAGACTACATCAGCGCAGTTACTTACGAGCATCTACTTGCCGGGTCAGCTACCACAGCATTTACATTGTCTTCCACTGTGTATTTAATTGCTGGGCATCCAAAAGTAGAGGAAAAGTTGCTAGTAGAGATTGACAGCTTTAGTCCATCGGATCAGATACCAACAGCTAACGATCTTCAGCAGAAGTTTCCATATCTTGATCAGGTGATTAAAGAAGCTATGAGATTCTATACTGTTTCACCTCTAGTTGCCAGAGAAACAGCCAAAGACGTAGAGATTGGTGGATATCTTCTTCCCAAGGGGACATGGGTCTGGTTAGCACTTGGAGTACTAGCCAAGGATCCAAAGAACTTTCCAGAACCAGAAAAATTTAAACCAGAGAGGTTTGATCAGGATTGTGAAGAGGAGAAACAAAGGCATCCTTATGCTTCCATCCCGTTTGGAATTGGTCCTAGAGCATGCATCGGCCAAAAATTTGCACTTCAAGAATTAAAGCTCTCTCTGATTCAATTGTATCGAAAGTTTGTATTCCGTCACTCCCCCTCCATGGAAAAACCTCTTGAACTCGAGTATGGAGTTATTCTCAACTTCAAGAATGGTGTCAAGCTCAGAGTGATAAACCGTACATAA | 1608 | 43.28 | MDDFVHAVLASATPSFPVGAILFTVIGVVAGVVVYLYGPYWGVRKVPGPPTPPLVGHLPLLAKYGPDVFSVLAKQYGPIFRFHMGRQPLIIIADPELCKEVGIKKFKDIPNRSVPSPISASPLHQKGLFFTRDTRWSTMRNTILSVYQPSHLARLIPTMQSIIESATQSLHSSIEEDITFSNLSLKLTTDVIGTAAFGVNFGLSNPQATRASAGEINGQDDKNDEVSDFINQHIYSTTQLKMDLSGSFSIILGLLVPVLQEPFRHILKRIPFTMDWKVERTNQKLSGRLDEIVEKRMNCNDRGSKDFLSLILRARESETVSRNVFTPDYISAVTYEHLLAGSATTAFTLSSTVYLIAGHPKVEEKLLVEIDSFSPSDQIPTANDLQQKFPYLDQVIKEAMRFYTVSPLVARETAKDVEIGGYLLPKGTWVWLALGVLAKDPKNFPEPEKFKPERFDQDCEEEKQRHPYASIPFGIGPRACIGQKFALQELKLSLIQLYRKFVFRHSPSMEKPLELEYGVILNFKNGVKLRVINRT | 535 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 2908578 | 2910937 | - | evm.model.ptg000002l.1163 | HCH12g0496 | 555343 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g0496 | 535 | SUPERFAMILY | Cytochrome P450 | 40 | 534 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | P450 superfamily signature | 471 | 480 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | P450 superfamily signature | 340 | 357 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | P450 superfamily signature | 394 | 405 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | P450 superfamily signature | 480 | 491 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | Pfam | Cytochrome P450 | 47 | 519 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | FunFam | Cytochrome P450 3A4 | 33 | 535 | - | - | |
| HCH12g0496 | 535 | Gene3D | Cytochrome P450 | 36 | 535 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PANTHER | THROMBOXANE-A SYNTHASE | 21 | 534 | - | - | |
| HCH12g0496 | 535 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 473 | 482 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH12g0496 | 535 | PRINTS | E-class P450 group I signature | 480 | 503 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | E-class P450 group I signature | 187 | 205 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | E-class P450 group I signature | 349 | 375 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | E-class P450 group I signature | 393 | 411 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | E-class P450 group I signature | 433 | 457 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | E-class P450 group I signature | 470 | 480 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | E-class P450 group I signature | 73 | 92 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0496 | 535 | PRINTS | E-class P450 group I signature | 329 | 346 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0496 | HCH-Chr12:2908578 | HCH12g0675 | HCH-Chr12:4115860 | 7.80E-26 | dispersed | |
| HCH12g0496 | HCH-Chr12:2908578 | HCH1g0254 | HCH-Chr1:41739573 | 3.20E-27 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g0496 | K20771 | - | csv:101209772 | 905.205 |