Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0500 ATGATGATGATGACAAAAGGTTTAATGGTGGATGAGAATTTGTCTATCTTAACTTGTGCATCTGGAGAAATAAGTGCTTCTTCTGGTATAAGAAATGAAGCTGATGATGACCCTCTGTATTCTCAACTTTCCTCTGCTTCAACAAATCAACCACCTCCTTCATCAAAGAAGAAGAGAAATCTCCCCGGAAACCCAGATCCAGAAGCTGAAGTGATCGTCTTGTCGCCCAAAACACTTATGGCAACGAATAGATTTCTCTGTGAGATTTGTAAGAAAGGATTTAAAAGAGATCAGAATCTTCAACTTCATAGGAGAGGGCATAATTTGCCATGGAAACTAAAGCAAAGAAGCAATAAGGAAGTGAAGAAGAAAGTGTACGTTTGCCCAGAAACGACATGCGTGCACAATCATCCATCAAGGGCACTAGGAGATCTTACTGGGATTAAGAAACATTTTTCAAGGAAGCACGGTGAGAAGAAATGGAAGTGTGAAAAATGTTCAAAGCATTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGCACTAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACTCACAGAGCTTTTTGTGATGCTTTGGCCCACGAAAGTACTGCAGTTACATCATCCACCATGGCAGCTTCGAGCCCACTTCTTCCCTCTCAATCCCAATTCCAAAACGTAAACCTTCTCCACTCATTACGCCCATTCTCAGTAAAAAGAGAACAAGAACATCACTTGTATTCTCAAGTTCCTTCCAATTGGTTGCCTCCTCAAACTCCATCTCTCTCATGCAATAATAACATCCCACCATCACCGATAAATCCCGGCATCGTCTCGTCGTTTTCCACCGCCATAGACGACAGCAATGGCCAGTCTGTCATCATTCAGAACCATCAACAAAACCAAACCCAAAACCCTAACCCTACTTCTGTGTCTCCATTGTTGACAACCCTCCAAGCTCAAAACGAATTAGAATTAGGTTCTAATTCTATACCATTAATGTTTAGTTCTTGTCCTGGATGGGAAACTATGCTAACTAATAATGATAATAATAGAAGCTTTAATGGAGGTCATGGTCATGGGCTGGCTCCAAATCTTGATCAGAATAAAAGTGGTTCTGAAAGTGCTCCTCTTTTTCATCCAATGATGAGTTTTGAAGAAGCTTTAAATGGAATATTATTGAATCGAATGAATAAAGATGAGAACAAAGGTGGCGGCGGTGGTGGTGGTGGGGGAGATGGAAATGGAAATGGTGATTTTGGAGAGACAAGGGATTTCTTGGGACTTAGAGGATTGGACGACATGAATTCTTCTTCTTCAACTTATGATCTTGGAGTTGGACTGCGACAGAATCATACACAAACAACGTTCTGGCTTAACTAA 1422 41.07 MMMMTKGLMVDENLSILTCASGEISASSGIRNEADDDPLYSQLSSASTNQPPPSSKKKRNLPGNPDPEAEVIVLSPKTLMATNRFLCEICKKGFKRDQNLQLHRRGHNLPWKLKQRSNKEVKKKVYVCPETTCVHNHPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKHYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAHESTAVTSSTMAASSPLLPSQSQFQNVNLLHSLRPFSVKREQEHHLYSQVPSNWLPPQTPSLSCNNNIPPSPINPGIVSSFSTAIDDSNGQSVIIQNHQQNQTQNPNPTSVSPLLTTLQAQNELELGSNSIPLMFSSCPGWETMLTNNDNNRSFNGGHGHGLAPNLDQNKSGSESAPLFHPMMSFEEALNGILLNRMNKDENKGGGGGGGGGDGNGNGDFGETRDFLGLRGLDDMNSSSSTYDLGVGLRQNHTQTTFWLN 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2934064 2936212 + evm.model.ptg000002l.1159 HCH12g0500 555347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0500 473 SMART c2h2final6 126 156 IPR013087 -
HCH12g0500 473 SMART c2h2final6 161 181 IPR013087 -
HCH12g0500 473 SMART c2h2final6 85 107 IPR013087 -
HCH12g0500 473 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 451 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH12g0500 473 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
HCH12g0500 473 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 160 184 - -
HCH12g0500 473 SUPERFAMILY beta-beta-alpha zinc fingers 84 181 IPR036236 -
HCH12g0500 473 Gene3D Classic Zinc Finger 118 209 - -
HCH12g0500 473 MobiDBLite consensus disorder prediction 28 69 - -
HCH12g0500 473 Gene3D Classic Zinc Finger 81 108 - -
HCH12g0500 473 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 122 156 - -
HCH12g0500 473 MobiDBLite consensus disorder prediction 38 57 - -
HCH12g0500 473 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
HCH12g0500 473 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
HCH12g0500 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
HCH12g0500 473 MobiDBLite consensus disorder prediction 410 435 - -
HCH12g0500 473 FunFam protein indeterminate-domain 12-like 64 132 - -
HCH12g0500 473 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 187 225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0500 HCH-Chr12:2934064 HCH2g0698 HCH-Chr2:50767069 8.60E-85 dispersed
HCH12g0500 HCH-Chr12:2934064 HCH4g1486 HCH-Chr4:11238449 3.90E-85 wgd
HCH12g0500 HCH-Chr12:2934064 HCH6g0106 HCH-Chr6:1325702 2.60E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32671 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0500 K25870 - vvi:100257789 411.379