Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0500 | ATGATGATGATGACAAAAGGTTTAATGGTGGATGAGAATTTGTCTATCTTAACTTGTGCATCTGGAGAAATAAGTGCTTCTTCTGGTATAAGAAATGAAGCTGATGATGACCCTCTGTATTCTCAACTTTCCTCTGCTTCAACAAATCAACCACCTCCTTCATCAAAGAAGAAGAGAAATCTCCCCGGAAACCCAGATCCAGAAGCTGAAGTGATCGTCTTGTCGCCCAAAACACTTATGGCAACGAATAGATTTCTCTGTGAGATTTGTAAGAAAGGATTTAAAAGAGATCAGAATCTTCAACTTCATAGGAGAGGGCATAATTTGCCATGGAAACTAAAGCAAAGAAGCAATAAGGAAGTGAAGAAGAAAGTGTACGTTTGCCCAGAAACGACATGCGTGCACAATCATCCATCAAGGGCACTAGGAGATCTTACTGGGATTAAGAAACATTTTTCAAGGAAGCACGGTGAGAAGAAATGGAAGTGTGAAAAATGTTCAAAGCATTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGATTTGTGGCACTAGAGAGTATAGATGTGACTGTGGAACCCTCTTCTCTAGGAGGGACAGTTTCATAACTCACAGAGCTTTTTGTGATGCTTTGGCCCACGAAAGTACTGCAGTTACATCATCCACCATGGCAGCTTCGAGCCCACTTCTTCCCTCTCAATCCCAATTCCAAAACGTAAACCTTCTCCACTCATTACGCCCATTCTCAGTAAAAAGAGAACAAGAACATCACTTGTATTCTCAAGTTCCTTCCAATTGGTTGCCTCCTCAAACTCCATCTCTCTCATGCAATAATAACATCCCACCATCACCGATAAATCCCGGCATCGTCTCGTCGTTTTCCACCGCCATAGACGACAGCAATGGCCAGTCTGTCATCATTCAGAACCATCAACAAAACCAAACCCAAAACCCTAACCCTACTTCTGTGTCTCCATTGTTGACAACCCTCCAAGCTCAAAACGAATTAGAATTAGGTTCTAATTCTATACCATTAATGTTTAGTTCTTGTCCTGGATGGGAAACTATGCTAACTAATAATGATAATAATAGAAGCTTTAATGGAGGTCATGGTCATGGGCTGGCTCCAAATCTTGATCAGAATAAAAGTGGTTCTGAAAGTGCTCCTCTTTTTCATCCAATGATGAGTTTTGAAGAAGCTTTAAATGGAATATTATTGAATCGAATGAATAAAGATGAGAACAAAGGTGGCGGCGGTGGTGGTGGTGGGGGAGATGGAAATGGAAATGGTGATTTTGGAGAGACAAGGGATTTCTTGGGACTTAGAGGATTGGACGACATGAATTCTTCTTCTTCAACTTATGATCTTGGAGTTGGACTGCGACAGAATCATACACAAACAACGTTCTGGCTTAACTAA | 1422 | 41.07 | MMMMTKGLMVDENLSILTCASGEISASSGIRNEADDDPLYSQLSSASTNQPPPSSKKKRNLPGNPDPEAEVIVLSPKTLMATNRFLCEICKKGFKRDQNLQLHRRGHNLPWKLKQRSNKEVKKKVYVCPETTCVHNHPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKHYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAHESTAVTSSTMAASSPLLPSQSQFQNVNLLHSLRPFSVKREQEHHLYSQVPSNWLPPQTPSLSCNNNIPPSPINPGIVSSFSTAIDDSNGQSVIIQNHQQNQTQNPNPTSVSPLLTTLQAQNELELGSNSIPLMFSSCPGWETMLTNNDNNRSFNGGHGHGLAPNLDQNKSGSESAPLFHPMMSFEEALNGILLNRMNKDENKGGGGGGGGGDGNGNGDFGETRDFLGLRGLDDMNSSSSTYDLGVGLRQNHTQTTFWLN | 473 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 2934064 | 2936212 | + | evm.model.ptg000002l.1159 | HCH12g0500 | 555347 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0500 | 473 | SMART | c2h2final6 | 126 | 156 | IPR013087 | - | |
HCH12g0500 | 473 | SMART | c2h2final6 | 161 | 181 | IPR013087 | - | |
HCH12g0500 | 473 | SMART | c2h2final6 | 85 | 107 | IPR013087 | - | |
HCH12g0500 | 473 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 44 | 451 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
HCH12g0500 | 473 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 139 | 218 | - | - | |
HCH12g0500 | 473 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 160 | 184 | - | - | |
HCH12g0500 | 473 | SUPERFAMILY | beta-beta-alpha zinc fingers | 84 | 181 | IPR036236 | - | |
HCH12g0500 | 473 | Gene3D | Classic Zinc Finger | 118 | 209 | - | - | |
HCH12g0500 | 473 | MobiDBLite | consensus disorder prediction | 28 | 69 | - | - | |
HCH12g0500 | 473 | Gene3D | Classic Zinc Finger | 81 | 108 | - | - | |
HCH12g0500 | 473 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 122 | 156 | - | - | |
HCH12g0500 | 473 | MobiDBLite | consensus disorder prediction | 38 | 57 | - | - | |
HCH12g0500 | 473 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 87 | 107 | IPR013087 | - | |
HCH12g0500 | 473 | Pfam | Zinc finger, C2H2 type | 85 | 107 | IPR013087 | - | |
HCH12g0500 | 473 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 85 | 107 | IPR013087 | - | |
HCH12g0500 | 473 | MobiDBLite | consensus disorder prediction | 410 | 435 | - | - | |
HCH12g0500 | 473 | FunFam | protein indeterminate-domain 12-like | 64 | 132 | - | - | |
HCH12g0500 | 473 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 187 | 225 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0500 | HCH-Chr12:2934064 | HCH2g0698 | HCH-Chr2:50767069 | 8.60E-85 | dispersed | |
HCH12g0500 | HCH-Chr12:2934064 | HCH4g1486 | HCH-Chr4:11238449 | 3.90E-85 | wgd | |
HCH12g0500 | HCH-Chr12:2934064 | HCH6g0106 | HCH-Chr6:1325702 | 2.60E-89 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32671 | None | None | None | None | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0500 | K25870 | - | vvi:100257789 | 411.379 |