Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0507 ATGTCGAAAATGAAACATCTTCTCAGAAAGCTTCACATCGGTGGGGGAATTAGTGAGCATCAACGATTGAGCGATACCCGACCCGTGACCCGTCCGAGTACGAGTCCGAGTCCGAGTCCCACTCCGAGCCCAAGTCCGCACAGTAATAATCCATCGGCTTCTTCTTCTTCTTCTTCTGGGTCATCGTCATCTCTAGCTTTGGCATCTTCGACTACAATGGGGAGATTAGAGGCCGTTGAATCGGTGGTTGATCGGACGGCTGAGGGCGTGGATTTCAATGCTTTGGAAGAGGAATTTCAGGTCCAATTAGCTATGGCGATTAGTGCTTCCGATCCTGATTCGAGAGAAGATAATACTGAGTCTGCTCAGATCGATGCTGCCAAACGGATGAGTCTTGGTTGTTCTCCTTCAGTCTCTGGCAGTCATGCCCTTGCCGAATTTCTCTCCCTTCAGTATTGGAGCTATAATGTTGTAAATTATGATGAAAAAGTGATCGATGGATTTTATGACTTATATGGCATTACTGCAAACTCTAGCACCCGAGGAAAGATGCCATTGTTAGTTGATCTTAAAGGAATATCTGTGTCAAGTGATATTGTTTATGAAGTGATCTTGGTAAATCGCTTGATGGATCCTGAACTTCAAAGGCTGGAGAGACAAGCATATGACATATTCATGGAGTGTAGAGTTTCTGAATGTGGCTTCATTTCTAGTGGTCTGGTTCAAAAAATTGCTGATATAGTCGTTGCTAGAATGGGTGGTCCTGTTGGTAATGCTGAGGAAATGTTGAGAAAGTGGACCGCCAGGAGTTATGAGTTGCGTAATTCTTTGAACACTATCATTCTACCCCTTGGAGGCCTTGATATTGGACTTGCACGCCATAGAGCCTTGCTTTTTAAGGTACTGGCTGATCGGATTAATCTTCCATGTATTCTTGTCAAAGGTAGCTACTACACTGGTACTGATGATGGGGCTGTGAATATGATCAAACTTGATAGTGGAAGTGAATATATCATTGATCTAATGGGTGCTCCAGGCACTCTAATTCCCTCAGAAGTACCGAGCAGTCACCTTTCAAATTATGGCTTTGATAGGAGATCCACCGATGTTATAGTAGTTCCTGAAGATGTGTTGCTGGCACGACGTGTAGGAAACCAAGCATTATCGATTTCATCTACCCAAGATGGGATAGTAAACATTAGCAACGTGATATCCGAAGAAGTTTCGGGTTCAGGTATTCAAACGAAAGAGAATGTTAGAAACATTACTGAAGAAATTCAGACTGGGAGTTCTGATTATGATTTTGGGAAGCTTCTAGAGTTGGAAAACGATCCATGTGAAAGTTCATCAGGTGCATGTGGACAAACATCATCTGCTCAAAAGAAGAAAGTTAAAAAAGTTTCAAAATATGTAATAAGTGCCGCAAAGGACCCAGAGTTTGCTCAGAAATTACACGCTGTCTTGTTAGAAAGTGGTGCATCACCTCCTGCAGATTTGTTTTCAGATATAGATCCACAGGATATTGGTGTAAGCAAAGTGGTTCACCAAATTTATCCAATCAATGAAAAAGGCATGGATGTTGGGCTTCAATGCCATCCTTATGAGTTGTTATCATTCCACGGACAGTCTTCTGCTGCTGCTAGTGCAGTAGAGTATTTGAACAATGTTGCCTCTGAAAATAAGCAGAAAGTGTCTTCTGATGGGCTATCTGAAGAACAAGAACTTGAGACAAATGTGAGCAAACATGGCATTTTCCTGCCTCACAGTATGCCAGGGGAGGATTTTGTCGTTGTTGGAGGTGAGACAGGAAAATTGATTGATGTTGATGGAACTTTGTATCGAGGACACATGGATGGTGTTTCATTCTCTGAAGCCGACTCTCATAAAAAACAACTAGGAATTGCTTCTGTGAGTGAAGAGAGAAGATGGTTACAAGCTAAGAGTGGGGGAGCTCTCCAATGCTTTGAGTTGCGGGAAAACCCATCAGTTAATTTGATGGACATGGCTGATGGTAACCTGCATAATACTTCTGATGGCCACAGTGAGACGATTAACCCAATATTAGGTGAAGTTGCAGAATGGGAAATTCCTTGGGAGGATCTTAACATTGGTGAACGTATTGGCATTGGTTCATACGGTGAGGTTTATCGTGCAGATTGGAATGGCACTGAAGTTGCTGTAAAGAAGTTTTTGGACCAAGATTTATCTGGTGCTGCTTTGGTTCAATTAAAATGTGAAGTTGAAATCATGTTAAGACTAAGGCATCCTAATGTTGTCCTTTTCATGGGAGCGGTCACTCGGCCCCCCCATTTTTCTATCTTAACAGAGTTTCTTCCCAGGGGAAGTCTGTATAGGTTATTGCATCGTCCCAATTCTCAACTTGATGAAAGGAGACGATTGAAAATGGCTCTTGATGTAGCAAAAGGAATGAACTACTTGCACACAAGCCATCCTACCATTGTTCATAGAGATCTAAAGTCACCAAATCTCCTTGTTGATAAAAACTGGGTTGTCAAGGTCTGTGATTTTGGTTTGTCACGTGTCAAGCAGAACACGTTTCTATCTTCGAAGTCAACTGCTGGAACGCCTGAATGGATGGCGCCAGAAGTTCTAAGGAATGAACCAGCTAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATATTATGGGAATTGACCACGTGCCGCATCCCATGGAAAGGCTTGAACCCAATGCAGGTCGTAGGAGCTGTTGGATTCCAAAATAGGCGCCTAGAGATTCCAGAAGATGTTGATCCAGCAGTTGCACAGATCATTTGCGAATGTTGGCAAGTAGATACCCAATTGAGACCGTCTTTCGCTCAGCTTATTTCTCGATTGCGGCGGCTTCAACGGCTTGTTCGTATAACAAATTCAGGGAATCAGTAA 2907 42.83 MSKMKHLLRKLHIGGGISEHQRLSDTRPVTRPSTSPSPSPTPSPSPHSNNPSASSSSSSGSSSSLALASSTTMGRLEAVESVVDRTAEGVDFNALEEEFQVQLAMAISASDPDSREDNTESAQIDAAKRMSLGCSPSVSGSHALAEFLSLQYWSYNVVNYDEKVIDGFYDLYGITANSSTRGKMPLLVDLKGISVSSDIVYEVILVNRLMDPELQRLERQAYDIFMECRVSECGFISSGLVQKIADIVVARMGGPVGNAEEMLRKWTARSYELRNSLNTIILPLGGLDIGLARHRALLFKVLADRINLPCILVKGSYYTGTDDGAVNMIKLDSGSEYIIDLMGAPGTLIPSEVPSSHLSNYGFDRRSTDVIVVPEDVLLARRVGNQALSISSTQDGIVNISNVISEEVSGSGIQTKENVRNITEEIQTGSSDYDFGKLLELENDPCESSSGACGQTSSAQKKKVKKVSKYVISAAKDPEFAQKLHAVLLESGASPPADLFSDIDPQDIGVSKVVHQIYPINEKGMDVGLQCHPYELLSFHGQSSAAASAVEYLNNVASENKQKVSSDGLSEEQELETNVSKHGIFLPHSMPGEDFVVVGGETGKLIDVDGTLYRGHMDGVSFSEADSHKKQLGIASVSEERRWLQAKSGGALQCFELRENPSVNLMDMADGNLHNTSDGHSETINPILGEVAEWEIPWEDLNIGERIGIGSYGEVYRADWNGTEVAVKKFLDQDLSGAALVQLKCEVEIMLRLRHPNVVLFMGAVTRPPHFSILTEFLPRGSLYRLLHRPNSQLDERRRLKMALDVAKGMNYLHTSHPTIVHRDLKSPNLLVDKNWVVKVCDFGLSRVKQNTFLSSKSTAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELTTCRIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPAVAQIICECWQVDTQLRPSFAQLISRLRRLQRLVRITNSGNQ 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 2986428 2993658 + evm.model.ptg000002l.1152 HCH12g0507 555354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0507 968 Gene3D Phosphorylase Kinase; domain 1 694 778 - -
HCH12g0507 968 SUPERFAMILY Protein kinase-like (PK-like) 683 952 IPR011009 -
HCH12g0507 968 ProSitePatterns Protein kinases ATP-binding region signature. 707 729 IPR017441 GO:0005524(InterPro)
HCH12g0507 968 Gene3D Transferase(Phosphotransferase) domain 1 780 963 - -
HCH12g0507 968 FunFam Serine/threonine-protein kinase isoform 1 692 779 - -
HCH12g0507 968 SMART serkin_6 701 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0507 968 PANTHER SERINE-THREONINE PROTEIN KINASE 36 956 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH12g0507 968 ProSiteProfiles Protein kinase domain profile. 701 960 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH12g0507 968 FunFam Serine/threonine-protein kinase CTR1 780 963 - -
HCH12g0507 968 PRINTS Tyrosine kinase catalytic domain signature 924 946 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0507 968 PRINTS Tyrosine kinase catalytic domain signature 880 902 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0507 968 PRINTS Tyrosine kinase catalytic domain signature 814 832 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0507 968 PRINTS Tyrosine kinase catalytic domain signature 861 871 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0507 968 PRINTS Tyrosine kinase catalytic domain signature 775 788 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0507 968 Pfam Ethylene-responsive protein kinase Le-CTR1 145 349 - -
HCH12g0507 968 MobiDBLite consensus disorder prediction 33 47 - -
HCH12g0507 968 Pfam Protein tyrosine and serine/threonine kinase 702 953 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0507 968 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH12g0507 968 CDD STKc_MAP3K-like 707 951 - -
HCH12g0507 968 MobiDBLite consensus disorder prediction 1 68 - -
HCH12g0507 968 MobiDBLite consensus disorder prediction 48 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0373 HCH-Chr11:3504491 HCH12g0507 HCH-Chr12:2986428 1.60E-115 dispersed
HCH12g0507 HCH-Chr12:2986428 HCH3g0203 HCH-Chr3:1295055 1.60E-194 dispersed
HCH12g0507 HCH-Chr12:2986428 HCH9g0516 HCH-Chr9:3311571 3.60E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81112 PF07714 PK_Tyr_Ser-Thr 7.00E-65 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0507 K04424 - csv:101214554 1470.29