Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0517 ATGGGAATCTGCATATCCGCTGCATCTTCACAGATTCATGAAACTGGAGGTGGTAATATTACTATTACAAACGAAAACGAGAACGAGAACGATATCGTCGTCTTTCAAGAACACGACTTTATTTGTGGTACTCAAAAACTCGATTCCATTTGTTCTACACGAGGTAGCAAAGAATTAAACCAAGATGCAGCCTTCTTCTACCAGGGTTATGGAGAAGAAAACACAGCTTTGTTAGGAGTTTTTGATGGGCATGGAAAAAATGGTCATATAATTAGCAACTTAGTCAAAAATCGCCTACCTTCGCTTTTACTTGGCCATAGAAACGCTCTATCAAAGACAGATGGTGATTATAATAATTCCCGTGATCATTTTGATGGGAGAGATGGGGAATTGGTAGAAAGCAAGAACTTTGTCTCGTGGAAAGAAGCAGTTGTTAGTGGTTTTAAGGTGATGGATAAGGAGATTAAACTTCAAGAAAATTTGGATGGCTCATGCAGTGGATCCACTGCTGTAATTGCTGTCAGACAGGGAGAAGATCTTGTCATTGCTAATCTGGGTGATTCAAGAGCAGTATTGGGGAGAATCACTGAAGATGGAATCAAAGCTATTCAATTGACAACTGATTTAAAGCCTAGTTTGCCAAACGAAGCTGAGCGAATAAGGAGATGTAATGGTAGGGTATTAGCACTAAAAGAAGAACCACATATACAAAGAGTGTGGCTTCCAAATGAAGACATGCCGGGGCTTGCAATGTCAAGAGCTTTTGGAGATTTGGCTCTTAAAAAACATGGCATTATTGCTCTCCCTGATGTCTCTTACCGTCGTCTAACTTCTGATGATCAATTCATTGTTCTTGCAACTGATGGGGTATGGGACGTATTGAGCAATAATCAGGTGGCGTCTATTGTTTGGGCGGCGGAGAACGAGGAAGCGGCGGCAAGAGCGGTGGCGGAGGCTGCGGCGGTGGCTTGGAAAAGATACCCTTCCTCGAAACTGGACGATTGCACTGTAACTGAAGCGTGCCGGCGTTTTCCCTCCGACAACCGACATCTCCGCCGTGGTACGGCCTCAACGTCCGTAGATACAAATCTGACGGTCACGATCCTCACGGAGAATAACAACGAAATTGCGAGATAA 1137 43.62 MGICISAASSQIHETGGGNITITNENENENDIVVFQEHDFICGTQKLDSICSTRGSKELNQDAAFFYQGYGEENTALLGVFDGHGKNGHIISNLVKNRLPSLLLGHRNALSKTDGDYNNSRDHFDGRDGELVESKNFVSWKEAVVSGFKVMDKEIKLQENLDGSCSGSTAVIAVRQGEDLVIANLGDSRAVLGRITEDGIKAIQLTTDLKPSLPNEAERIRRCNGRVLALKEEPHIQRVWLPNEDMPGLAMSRAFGDLALKKHGIIALPDVSYRRLTSDDQFIVLATDGVWDVLSNNQVASIVWAAENEEAAARAVAEAAAVAWKRYPSSKLDDCTVTEACRRFPSDNRHLRRGTASTSVDTNLTVTILTENNNEIAR 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3021538 3023250 + evm.model.ptg000002l.1142 HCH12g0517 555364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0517 378 ProSitePatterns PPM-type phosphatase domain signature. 77 85 IPR000222 GO:0043169(InterPro)
HCH12g0517 378 Pfam Protein phosphatase 2C 55 320 IPR001932 -
HCH12g0517 378 SUPERFAMILY PP2C-like 49 337 IPR036457 -
HCH12g0517 378 ProSiteProfiles PPM-type phosphatase domain profile. 47 342 IPR001932 -
HCH12g0517 378 SMART PP2C_4 35 340 IPR001932 -
HCH12g0517 378 Gene3D - 46 340 IPR036457 -
HCH12g0517 378 CDD PP2Cc 49 304 IPR001932 -
HCH12g0517 378 PANTHER PROTEIN PHOSPHATASE 49 338 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0517 HCH-Chr12:3021538 HCH6g0929 HCH-Chr6:44069550 6.70E-72 dispersed
HCH12g0517 HCH-Chr12:3021538 HCH7g0165 HCH-Chr7:1106621 1.30E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0517 - - - 0.0