Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0523 ATGATTTTCAGAGAACCGTTTAGAATGAATCGAAGCATTCAAATTCCTTCATGGGACCCACTTGAAGACTCAATGACCGGAGTCTCTTCGCCGGTTTTTATCGGCAGTCAATCCCACGGCGTTGACTCTTTCATCGATTCTTTTGCTGCGATTCACCGTTACCTGCCGTCGAACGATTTTTCAGCGGCGAATTCCGATATGGGTTGTGATGGTTTTTCTTGCGACCATTTTCGAATGTTTGAGTTTAAGGTTCGGAGATGCGCACGTGGGAGGTCGCATGATTGGACGGAGTGTCCTTTTGCTCATCCCGGCGAGAAAGCTCGCCGGAGAGATCCGAGGAAAGTTCTTTATTCGGGTACTGCATGCCCCGAGTTTCGTAAAGGGAATTGCAAAAGGGGAGAGTCCTGCGAATTCGCTCATGGGATTTTTGAGTGCTGGCTTCATCCATCTCGTTACCGGACTCAGCCATGCAAGGACGGAATTAGCTGTCGCCGTCGGGTCTGTTTTTTCGCTCACTCGCCGGAAGAGCTACGTGTCTTGCCTCATCCGGGTTCCGTGGACTCTATTGATTCGTATTTGGCAAAGGGGTCATTTGTTACATCGCCGACTTCCGTACTACCATCGCCGCCTCTCTCCCCGCCGTCGATTAACGGACTTGTTGCTTCGATGCATAATCTAAGTATCGAAAGAAATATGAAAATGGGTTCTCAATGGGGTGCTCCGATGCAACAGAATCTGCTGTCACCGGTGACCGGAAAATTCGACATGTGGAAGGAAAAATACGAGGAAGAGCCGGTAATGGAGCGTGTAGAATCTGGGAGAGATCTTCGAAACAAGATGTATGCTAAACTGAGGAAAGATAATTCAGTGAATCAAAATGATTCCACCGTTTGGAATCCTGATATTGATTGGGTCTCTGAGTTGCTCGAGTAA 933 48.12 MIFREPFRMNRSIQIPSWDPLEDSMTGVSSPVFIGSQSHGVDSFIDSFAAIHRYLPSNDFSAANSDMGCDGFSCDHFRMFEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKVLYSGTACPEFRKGNCKRGESCEFAHGIFECWLHPSRYRTQPCKDGISCRRRVCFFAHSPEELRVLPHPGSVDSIDSYLAKGSFVTSPTSVLPSPPLSPPSINGLVASMHNLSIERNMKMGSQWGAPMQQNLLSPVTGKFDMWKEKYEEEPVMERVESGRDLRNKMYAKLRKDNSVNQNDSTVWNPDIDWVSELLE 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3042949 3043881 - evm.model.ptg000002l.1136 HCH12g0523 555370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0523 310 FunFam Zinc finger CCCH domain-containing protein 66 74 142 - -
HCH12g0523 310 SMART c3hfinal6 151 174 IPR000571 GO:0046872(InterPro)
HCH12g0523 310 SMART c3hfinal6 116 142 IPR000571 GO:0046872(InterPro)
HCH12g0523 310 ProSiteProfiles Zinc finger C3H1-type profile. 116 143 IPR000571 GO:0046872(InterPro)
HCH12g0523 310 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 141 IPR000571 GO:0046872(InterPro)
HCH12g0523 310 PANTHER UNKEMPT FAMILY MEMBER 42 309 IPR045234 -
HCH12g0523 310 Gene3D - 114 179 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0519 HCH-Chr10:4214361 HCH12g0523 HCH-Chr12:3042949 1.30E-78 dispersed
HCH12g0523 HCH-Chr12:3042949 HCH8g0682 HCH-Chr8:43524013 1.70E-81 dispersed
HCH12g0523 HCH-Chr12:3042949 HCH4g0558 HCH-Chr4:3609386 8.20E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32673 PF00642 zf-CCCH 1.40E-06 CL0537 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0523 - - - 0.0