Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0525 | ATGGAGGAATATAATCACCTAAACGAAAACCCACCTCCCAGAGGAAATTTCTTGTACGCTTCTCCAATTCTTACAGCCAATTCTTCTCCAAATAATTACGGAAGATCATCAAATCAACAGCAGCAGCAACAGCAAGCTCATATGGCTGTTAATACTTTCCATCTTCAATCAGGAAATGATTGTTTCCAATCCGACCAATCACAACATCCAATTATCAAAACTGAAGCTAGCACTTCCCAACAACAACAACAGCATGTTCTTAAATTTCATTACCCTTTAATGAGACAAGGAAACCAACCCACGGCTCGACCGGGACAAGGAAACGACGAAAACGCCATCGATGTTGAAGCCATGAAAGCCAAAATCATTTCTCATCCTCAATACTCTAGCCTCCTTGAAGCTTACATGGAATGTCAAAAGGTCGGTGCTCCGCCAGAAGTGGCGGCGCGGCTGGTGGCGGCGAGGCAAGAGTTTGAGGCACGGCAACGATCTACGGTGGCGTCGGGAGAAAGCACTAAGGATCCAGAACTCGACCAGTTCATGGAAGCGTACTATGACATGTTGGTGAAATATCGAGAGGAACTGACGAAGCCTATACAAGAAGCTATGGATTTCATGCGAAGGATCGAATCTCAGCTTGGCTCTCTTTGTAATGGTCCGGTTCGGATCTTCAATTCTGATGAGAAGTGTGAAGGCATCGGATCGTCCGATGAGGATCAGGAAAACAGTGGTGGAGAAACTGAATTGCCAGAGATTGATCCGCGTGCTGAGGACCGGGAATTGAAGAACCACCTTCTGAGAAAGTACAGTGGTTACCTGAGCAGTCTCAAGCAGGAACTTTCCAAGAAGAAGAAGAAAGGTAAACTACCAAAAGATGCAAGGCAGAAACTGCTTAGTTGGTGGGAGTTGCATTACAAATGGCCTTATCCTTCGGAGACAGAGAAGGTGGCATTGGCTGAATCAACTGGGTTGGACCAGAAGCAAATAAATAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGCATTCACCCTCCCAATGCAGCTCTCTATATCGACGGTCACTACATGACCGATGGTCATTATCGTCTCGGACCATGA | 1137 | 45.65 | MEEYNHLNENPPPRGNFLYASPILTANSSPNNYGRSSNQQQQQQQAHMAVNTFHLQSGNDCFQSDQSQHPIIKTEASTSQQQQQHVLKFHYPLMRQGNQPTARPGQGNDENAIDVEAMKAKIISHPQYSSLLEAYMECQKVGAPPEVAARLVAARQEFEARQRSTVASGESTKDPELDQFMEAYYDMLVKYREELTKPIQEAMDFMRRIESQLGSLCNGPVRIFNSDEKCEGIGSSDEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGIHPPNAALYIDGHYMTDGHYRLGP | 378 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3068237 | 3071778 | + | evm.model.ptg000002l.1134 | HCH12g0525 | 555372 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0525 | 378 | Gene3D | - | 285 | 347 | - | - | |
HCH12g0525 | 378 | ProSiteProfiles | 'Homeobox' domain profile. | 280 | 343 | IPR001356 | GO:0003677(InterPro) | |
HCH12g0525 | 378 | SMART | KNOX2_2 | 167 | 218 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH12g0525 | 378 | MobiDBLite | consensus disorder prediction | 228 | 257 | - | - | |
HCH12g0525 | 378 | Pfam | Homeobox KN domain | 300 | 339 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH12g0525 | 378 | FunFam | Homeobox protein knotted-1-like 2 | 285 | 347 | - | - | |
HCH12g0525 | 378 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 117 | 350 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
HCH12g0525 | 378 | SMART | ELK_2 | 260 | 281 | IPR005539 | GO:0003677(InterPro) | |
HCH12g0525 | 378 | MobiDBLite | consensus disorder prediction | 26 | 48 | - | - | |
HCH12g0525 | 378 | SMART | KNOX1_2 | 116 | 160 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH12g0525 | 378 | Pfam | ELK domain | 260 | 281 | IPR005539 | GO:0003677(InterPro) | |
HCH12g0525 | 378 | ProSitePatterns | 'Homeobox' domain signature. | 318 | 341 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
HCH12g0525 | 378 | SMART | HOX_1 | 282 | 347 | IPR001356 | GO:0003677(InterPro) | |
HCH12g0525 | 378 | CDD | homeodomain | 292 | 344 | IPR001356 | GO:0003677(InterPro) | |
HCH12g0525 | 378 | Pfam | KNOX2 domain | 172 | 217 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH12g0525 | 378 | Pfam | KNOX1 domain | 117 | 159 | IPR005540 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
HCH12g0525 | 378 | ProSiteProfiles | ELK domain profile. | 260 | 280 | IPR005539 | GO:0003677(InterPro) | |
HCH12g0525 | 378 | SUPERFAMILY | Homeodomain-like | 281 | 356 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0525 | HCH-Chr12:3068237 | HCH14g0789 | HCH-Chr14:35952103 | 1.00E-75 | dispersed | |
HCH12g0525 | HCH-Chr12:3068237 | HCH4g0559 | HCH-Chr4:3620026 | 2.90E-128 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32674 | PF03791 | KNOX2 | 6.70E-25 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0525 | - | - | - | 0.0 |