Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0525 ATGGAGGAATATAATCACCTAAACGAAAACCCACCTCCCAGAGGAAATTTCTTGTACGCTTCTCCAATTCTTACAGCCAATTCTTCTCCAAATAATTACGGAAGATCATCAAATCAACAGCAGCAGCAACAGCAAGCTCATATGGCTGTTAATACTTTCCATCTTCAATCAGGAAATGATTGTTTCCAATCCGACCAATCACAACATCCAATTATCAAAACTGAAGCTAGCACTTCCCAACAACAACAACAGCATGTTCTTAAATTTCATTACCCTTTAATGAGACAAGGAAACCAACCCACGGCTCGACCGGGACAAGGAAACGACGAAAACGCCATCGATGTTGAAGCCATGAAAGCCAAAATCATTTCTCATCCTCAATACTCTAGCCTCCTTGAAGCTTACATGGAATGTCAAAAGGTCGGTGCTCCGCCAGAAGTGGCGGCGCGGCTGGTGGCGGCGAGGCAAGAGTTTGAGGCACGGCAACGATCTACGGTGGCGTCGGGAGAAAGCACTAAGGATCCAGAACTCGACCAGTTCATGGAAGCGTACTATGACATGTTGGTGAAATATCGAGAGGAACTGACGAAGCCTATACAAGAAGCTATGGATTTCATGCGAAGGATCGAATCTCAGCTTGGCTCTCTTTGTAATGGTCCGGTTCGGATCTTCAATTCTGATGAGAAGTGTGAAGGCATCGGATCGTCCGATGAGGATCAGGAAAACAGTGGTGGAGAAACTGAATTGCCAGAGATTGATCCGCGTGCTGAGGACCGGGAATTGAAGAACCACCTTCTGAGAAAGTACAGTGGTTACCTGAGCAGTCTCAAGCAGGAACTTTCCAAGAAGAAGAAGAAAGGTAAACTACCAAAAGATGCAAGGCAGAAACTGCTTAGTTGGTGGGAGTTGCATTACAAATGGCCTTATCCTTCGGAGACAGAGAAGGTGGCATTGGCTGAATCAACTGGGTTGGACCAGAAGCAAATAAATAATTGGTTCATAAACCAAAGGAAGAGACACTGGAAACCTTCTGAAGATATGCAGTTCATGGTGATGGATGGCATTCACCCTCCCAATGCAGCTCTCTATATCGACGGTCACTACATGACCGATGGTCATTATCGTCTCGGACCATGA 1137 45.65 MEEYNHLNENPPPRGNFLYASPILTANSSPNNYGRSSNQQQQQQQAHMAVNTFHLQSGNDCFQSDQSQHPIIKTEASTSQQQQQHVLKFHYPLMRQGNQPTARPGQGNDENAIDVEAMKAKIISHPQYSSLLEAYMECQKVGAPPEVAARLVAARQEFEARQRSTVASGESTKDPELDQFMEAYYDMLVKYREELTKPIQEAMDFMRRIESQLGSLCNGPVRIFNSDEKCEGIGSSDEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSETEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGIHPPNAALYIDGHYMTDGHYRLGP 378
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 3068237 3071778 + evm.model.ptg000002l.1134 HCH12g0525 555372
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0525 378 Gene3D - 285 347 - -
HCH12g0525 378 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677(InterPro)
HCH12g0525 378 SMART KNOX2_2 167 218 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH12g0525 378 MobiDBLite consensus disorder prediction 228 257 - -
HCH12g0525 378 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH12g0525 378 FunFam Homeobox protein knotted-1-like 2 285 347 - -
HCH12g0525 378 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 117 350 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH12g0525 378 SMART ELK_2 260 281 IPR005539 GO:0003677(InterPro)
HCH12g0525 378 MobiDBLite consensus disorder prediction 26 48 - -
HCH12g0525 378 SMART KNOX1_2 116 160 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH12g0525 378 Pfam ELK domain 260 281 IPR005539 GO:0003677(InterPro)
HCH12g0525 378 ProSitePatterns 'Homeobox' domain signature. 318 341 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH12g0525 378 SMART HOX_1 282 347 IPR001356 GO:0003677(InterPro)
HCH12g0525 378 CDD homeodomain 292 344 IPR001356 GO:0003677(InterPro)
HCH12g0525 378 Pfam KNOX2 domain 172 217 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH12g0525 378 Pfam KNOX1 domain 117 159 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH12g0525 378 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677(InterPro)
HCH12g0525 378 SUPERFAMILY Homeodomain-like 281 356 IPR009057 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0525 HCH-Chr12:3068237 HCH14g0789 HCH-Chr14:35952103 1.00E-75 dispersed
HCH12g0525 HCH-Chr12:3068237 HCH4g0559 HCH-Chr4:3620026 2.90E-128 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32674 PF03791 KNOX2 6.70E-25 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0525 - - - 0.0