Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0526 ATGGATAGTGATTCTAATACCGGTCTTCTTCTTGGGCTCAGCCTATCTCACGATTCTTTACGATTTTCTGATCATGAAAATGAAACGAAGAAGAAACTGGTTTTGAAATTTGACGATATATTACCATCGCTTACGTTAGGCTTATCAGGTCATACTTTCCGTTCAGTGGCTGAGATAATCGTCGGAAAATCCAACGACGACTTTCCCCGGCAGGCTTCTTCTGCTAGTGCTGTATCTTCATTTTCTAACTCGTCAAGCTTAAAGAGAGAGAGGGTAGAAGAGAAAGAGGCCGAGGCCGAGGTTTTTTTAGAGAAAGTTTCTTTGAAAGTTGGTGAGGAAGATGAAGATGGGAGTCCGAGGAAGAAACTTAGACTTACGAAAGAGCAATCTGCTGTTTTAGAAGACAGTTTCAAAGAACACGCAAGTCTCAGTCCTAAACAAAAGCAGGATTTGGCTAGACGATTAAACCTAAGGCCAAGGCAAGTGGAAGTATGGTTTCAGAATAGGAGAGCCAGAACAAAGCTGAAGCAAACGGAAATGGACTGCGAGTTACTAAAGAAATGTTGTGAAAAACTCAAAGAAGAAAACACGAGGCTTCAAAAGGAGCTGCAAGAGCTTAAATCACTCAAGTTAATGTCTCCTCCATTTTGTATGCAGCTACAAGCTGCCACTCTCACAGTGTGCCCTTCTTGCGAAAGATCCATTTGCAGCGGCGCGGACGAGTCTCCGACCACCGCCTTTTCGATCGGCCCGAAGCCTCACTTTCTGAAATATCCCTTTAGCCACCATCCATCGGCGGCTTGTTAG 807 44.11 MDSDSNTGLLLGLSLSHDSLRFSDHENETKKKLVLKFDDILPSLTLGLSGHTFRSVAEIIVGKSNDDFPRQASSASAVSSFSNSSSLKRERVEEKEAEAEVFLEKVSLKVGEEDEDGSPRKKLRLTKEQSAVLEDSFKEHASLSPKQKQDLARRLNLRPRQVEVWFQNRRARTKLKQTEMDCELLKKCCEKLKEENTRLQKELQELKSLKLMSPPFCMQLQAATLTVCPSCERSICSGADESPTTAFSIGPKPHFLKYPFSHHPSAAC 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3074291 3075495 - evm.model.ptg000002l.1133 HCH12g0526 555373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0526 268 Pfam Homeobox associated leucine zipper 176 209 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0526 268 SUPERFAMILY Homeodomain-like 117 184 IPR009057 -
HCH12g0526 268 ProSiteProfiles 'Homeobox' domain profile. 116 176 IPR001356 GO:0003677(InterPro)
HCH12g0526 268 ProSitePatterns 'Homeobox' domain signature. 151 174 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH12g0526 268 SMART halz 176 220 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0526 268 Gene3D - 111 181 - -
HCH12g0526 268 FunFam Homeobox-leucine zipper protein 18 104 181 - -
HCH12g0526 268 Pfam Homeodomain 120 174 IPR001356 GO:0003677(InterPro)
HCH12g0526 268 CDD homeodomain 119 177 IPR001356 GO:0003677(InterPro)
HCH12g0526 268 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 238 IPR050762 -
HCH12g0526 268 SMART HOX_1 118 180 IPR001356 GO:0003677(InterPro)
HCH12g0526 268 Coils Coil 175 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0526 HCH-Chr12:3074291 HCH6g0499 HCH-Chr6:18226695 1.90E-57 dispersed
HCH12g0526 HCH-Chr12:3074291 HCH14g0398 HCH-Chr14:33013592 5.10E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32675 PF00046 Homeodomain 3.70E-17 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0526 K09338 - csv:101212868 291.967