Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0532 ATGGCACCCTCTTTTGATTGGTGGGGAAAAGATAGCCATAGAGGAACCCCTGTTGTTGTCAAAATGGAAAATCCGAACTGGTCCATGGTTGAGCTTGAGGGTCCTTCTGAAGATGATTTCCTTGTCTCCGGTTCACCGGTTCGGGCCCGTGAAAAAGGCCGTGGCAAGAATGCCAAGCAGCTAACTTGGGTTCTTCTTCTTAAGGCTCATAGAGCTGCTGGTTGTTTAACCTCTATTGGTTCTGCATTGGTCGACCTCGCTGCCGCCGTTCGACGCCGTGTCGTTTCGGGCCGGACCGATGTTGATGTCGATAACGATACCGGTGTCGGTAGGGAGAAGGAGAATCCTACTGTGAAAACTAGGTTCTATTCTTGTATCAAGGTGTTCTTATGGTTGTCGGTGGTTATGTTAGGATTTGAGATTGTTGCTTTCTTTAAAGGTTGGCATTTTGGTACTCCAAAGCTTCAATTGGACTATCTTTGGGCAACTCCTTGGGGTTTCAAAGGAGCTTTTGATTGGATTTATTCTCAATGGGTGTTAATTCGTGTTGATTATTTAGCTCCTCCTCTCCAGTTTTTAGCCAATGCTTGTATTATACTGTTCATTATTCAGAGTTTGGATCGGTTAATTCTATGTTTTGGATGTTTTTGGGTCAAATTTAAGAAACTTAAACCGGTTCTTAAAGAAGGAGCATTAGACCTTGAATCTGGTGAAAAGGGTTACTTCCCAATGGTTCTTGTTCAGATCCCCATGTGTAATGAAAGAGAGGTTTATCAACAATCACTTGCTGCTATATGCAACTTAGATTGGCCAAAAACCAATTTGCTAATTCAAGTTCTTGATGATTCTGATGACCCCACTACCCAATTGCTGATAAAAGAGGAGGTTCAAAAATGGCAACAAGATGGTGCTAACATTGTTTACAGGCATAGGGTGATTAGAGATGGGTACAAGGCAGGGAATCTCAAGTCTGCTATGAATTGTAGCTATGTTAAAGATTATGAATTCGTCGCCATTTTCGATGCCGATTTTCAACCAACACCTGATTTTCTCAAAAGAACTGTTCCTCATTTTAAGGATAATGAAGAAGTGGGGCTGGTTCAAGCAAGATGGTCTTTTGTGAACAAGGATGAAAACTTGCTAACTAGACTGCAGAACATCAATTTAGCTTTCCATTTTGAGGTAGAGCAGCAAGTGAACGGCATATTTCTTAATTTCTTTGGGTTCAATGGGACTGCTGGTGTGTGGAGGATCAAAGCTCTCGAGGACTCTGGCGGGTGGTTGGAAAGGACTACCGTCGAGGACATGGATATTGCTGTCCGTGCGCATCTTCATGGATGGAAATTCATATTCCTGAATGATGTAGAGTGCCAATGTGAACTACCTGAATCTTATGAAGCTTATAGAAAGCAGCAACACAGATGGCATTCTGGTCCAATGCAATTATTCCGCCTTTGTCTGCCTGCTGTTATTCGATCCAAGATTAGTGTATGGAAAAAGTTCAATTTGATCTTCCTCTTTTTCCTGCTCAGAAAATTGGTACTGCCCTTTTATTCTTTCACACTTTTCTGCATAATTCTACCGATGACGATGTTTGTTCCAGAGGCTGAGCTACCAGCTTGGGTTGTTTGCTACATCCCAGCCACCATGTCATTTCTAAACATCCTGCCTGCCCCAAAATCCTTCCCTTTTATCGTCCCTTACCTTCTTTTCGAGAACACCATGTCAGTCACCAAGTTCAATGCCATGATCTCAGGCCTTTTCCAGCTCGGTAGTGCCTACGAATGGGTCGTTACAAAGAAATCCGGCCGCTCCTCTGAGGGCGATCTTGCCTCCATGTTAGAGAAAGAGCCAAAGCATCAAAGAGGGGCTTCCGTGCCCAACTTAGAAGAGATGAAGGAAGAAATCCAGAAGCAAGAGAAAAAGACTTCACGGAAGAAACATAACCGGATATACACGAAGGAACTCGCGTTAGCTTTCCTCCTTTTAACAGCTTCAGCAAGGAGCCTTCTGTCTGCACAAGGGATCCATTTCTACTTCTTACTGTTTCAAGGGATATCATTTCTGCTAGTTGGTTTGGACTTGATTGGAGAACAAATGGGGTGA 2106 43.3 MAPSFDWWGKDSHRGTPVVVKMENPNWSMVELEGPSEDDFLVSGSPVRAREKGRGKNAKQLTWVLLLKAHRAAGCLTSIGSALVDLAAAVRRRVVSGRTDVDVDNDTGVGREKENPTVKTRFYSCIKVFLWLSVVMLGFEIVAFFKGWHFGTPKLQLDYLWATPWGFKGAFDWIYSQWVLIRVDYLAPPLQFLANACIILFIIQSLDRLILCFGCFWVKFKKLKPVLKEGALDLESGEKGYFPMVLVQIPMCNEREVYQQSLAAICNLDWPKTNLLIQVLDDSDDPTTQLLIKEEVQKWQQDGANIVYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFKDNEEVGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGIFLNFFGFNGTAGVWRIKALEDSGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAVIRSKISVWKKFNLIFLFFLLRKLVLPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLASMLEKEPKHQRGASVPNLEEMKEEIQKQEKKTSRKKHNRIYTKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQMG 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3125612 3128129 + evm.model.ptg000002l.1127 HCH12g0532 555379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0532 701 MobiDBLite consensus disorder prediction 610 642 - -
HCH12g0532 701 Pfam Glycosyl transferase family group 2 337 539 IPR001173 -
HCH12g0532 701 SUPERFAMILY Nucleotide-diphospho-sugar transferases 245 521 IPR029044 -
HCH12g0532 701 FunFam probable xyloglucan glycosyltransferase 5 236 461 - -
HCH12g0532 701 Coils Coil 626 649 - -
HCH12g0532 701 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 236 460 IPR029044 -
HCH12g0532 701 MobiDBLite consensus disorder prediction 609 647 - -
HCH12g0532 701 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 172 700 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0532 HCH-Chr12:3125612 HCH2g1239 HCH-Chr2:54742235 2.40E-115 dispersed
HCH12g0291 HCH-Chr12:1647979 HCH12g0532 HCH-Chr12:3125612 3.80E-267 transposed
HCH13g0797 HCH-Chr13:7679576 HCH12g0532 HCH-Chr12:3125612 3.30E-247 transposed
HCH5g1039 HCH-Chr5:11867337 HCH12g0532 HCH-Chr12:3125612 7.50E-247 transposed
HCH12g0532 HCH-Chr12:3125612 HCH4g0567 HCH-Chr4:3711248 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0532 - - - 0.0