Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0533 ATGGGTGATCTTGAAAATGATGATTTGGGTTTTCAAAATGCAAATGATAACAGTGTATTGAATTGTCCATCTTCTGGTATGAACACAACATTGACCATGGGATCAGTTTCCATGAACAAATCTTCTCTTGGAATGGACTCTTTCTTTGCTTCTGGTTGGGATCCATTGGTTTCATTGAGCCAATCTGAGAATTTTGGGGCAGCTTCTCTTGTGTCTCATGGCCATGGAGGATTTCAAGCTTCATTCCCTGCTGTTTTGGAAAACCAAGGTTTGAGTGGAACAACACAAATTGTGCAATATCCATCTGATTCTGGTTATGCGGAAATGGTGACAAAACTTCCTTGTTTTGGAAGTGGGAATTACTCAGACATGTTTGGTTCCTTTGGTATTCCTGAATGCAGCCAGATTCCTACTAATAATGAGTGTTCCTTAAACTATGCCCCAAACAGGAATGGAGGAGCCAGTGAACGTGCATCAACAAATCAAACTCAAGAAAATCAGCAGTTATCAGGAGAGGAAGCTACTAGAATGGAAGAGGATGGTAAAAGAAGGAAACGATCCCTCGATGCCACTTTTCCATTTAGCCCAAATAAGAAATCTGAAGGGAAGTTAAAGAAGGATCTTTCTGGGGATAGCTCTAGTGTACAAGAAGAGAAGAAACCGGAGACTATCGAGCAGAATTTAGGCGGAACTTCGCACGGTAAGGCAGTGGGGAAGCAAACTAAAGAGAACTCTAATAGTGAAGAAACTCCCAAGGATAATTACATTCATGTTCGAGCTCGAAGAGGCCAGGCCACTAACAGCCATAGCCTTGCTGAAAGGGTAAGGAGAGAAAAGATCAGTGAGCGGATGAGATTGCTGCAAGAACTTGTTCCTGGTTGCAATAAGATTACCGGAAAGGCTGTAATGCTCGATGAGATTATCAACTACGTGCAGTCGCTGCAACAGCAAGTTGAGTTTTTGTCAATGAAACTTGCTACTGTCAATCCAGACACGAACATTGACTTAGAGAGGATTCTGTCTAAAGATATTCTCCACGCACGAAGTAATGGAACTGTACTCGGATTTGATCCTGGATTGAGCTCCTCGCATACCCTCCCTCACAGAATGTTTCAGTTTCAGGGAACAATGGCTACTATGCCAACCACATCTACTCAGTTTCCTCCTTTGCCTCAGACAATGTTAGACAGTGATCTCCAAAGTCTTTTTCAAATGGGATTCGATTCGGGTTTGACTATCGACAATTTGGGACCAAATGGGCGATTGAAATCAGAGCTATAA 1281 42.39 MGDLENDDLGFQNANDNSVLNCPSSGMNTTLTMGSVSMNKSSLGMDSFFASGWDPLVSLSQSENFGAASLVSHGHGGFQASFPAVLENQGLSGTTQIVQYPSDSGYAEMVTKLPCFGSGNYSDMFGSFGIPECSQIPTNNECSLNYAPNRNGGASERASTNQTQENQQLSGEEATRMEEDGKRRKRSLDATFPFSPNKKSEGKLKKDLSGDSSSVQEEKKPETIEQNLGGTSHGKAVGKQTKENSNSEETPKDNYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDTNIDLERILSKDILHARSNGTVLGFDPGLSSSHTLPHRMFQFQGTMATMPTTSTQFPPLPQTMLDSDLQSLFQMGFDSGLTIDNLGPNGRLKSEL 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3131179 3133212 - evm.model.ptg000002l.1126 HCH12g0533 555380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0533 426 MobiDBLite consensus disorder prediction 225 244 - -
HCH12g0533 426 MobiDBLite consensus disorder prediction 144 251 - -
HCH12g0533 426 MobiDBLite consensus disorder prediction 172 189 - -
HCH12g0533 426 FunFam Basic helix-loop-helix transcription factor 261 333 - -
HCH12g0533 426 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 100 394 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH12g0533 426 Gene3D - 261 333 IPR036638 GO:0046983(InterPro)
HCH12g0533 426 SMART finulus 270 320 IPR011598 GO:0046983(InterPro)
HCH12g0533 426 CDD bHLH_AtBPE_like 254 339 - -
HCH12g0533 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 264 314 IPR011598 GO:0046983(InterPro)
HCH12g0533 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 262 329 IPR036638 GO:0046983(InterPro)
HCH12g0533 426 MobiDBLite consensus disorder prediction 144 171 - -
HCH12g0533 426 MobiDBLite consensus disorder prediction 199 224 - -
HCH12g0533 426 Pfam Helix-loop-helix DNA-binding domain 267 315 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1202 HCH-Chr10:42953550 HCH12g0533 HCH-Chr12:3131179 6.00E-50 dispersed
HCH11g0591 HCH-Chr11:12166324 HCH12g0533 HCH-Chr12:3131179 1.30E-34 dispersed
HCH12g0533 HCH-Chr12:3131179 HCH1g0847 HCH-Chr1:57085334 7.30E-43 dispersed
HCH12g0533 HCH-Chr12:3131179 HCH4g0568 HCH-Chr4:3716839 3.40E-72 wgd
HCH12g0533 HCH-Chr12:3131179 HCH4g1459 HCH-Chr4:10890983 7.20E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32677 PF00010 HLH 4.50E-06 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0533 - - - 0.0