Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0534 ATGAAATCTGATCAGGCAGCTGTCTCTAATGCAATGTTCTTAGCTTCTCAGTTACATAGTTCAGGATTTAGTTATAAACTTGAAGGAAATGGAGATTTGCATTCTCCTTTGTCTGTGATGCCTCTAAAATCAGATGGTTCTCTTGGTATCATGGAAGCAATTACTAGATCACAATCTCAAGAAATAATACCAAGTCTGTCTCCAAAGCTTGAGGACTTTCTTGGTTGTGCAACTCATGGAAGAGAAGCAACAACAGCTCTAAGCTTAGACAGCATCTATTACAATCAAAATGCTGAGCCAGACTCAGAAATGGAAATCTCTTTGGACCTTTTCAAGCAACAAGAGCAACAACACATTTTACTTCATTCACAAAGATACTATTCTGGAGTTCCCTGCCATGGAATCTACCAATTTCCATTTGAGGAAGCAGCAAAGGAATCTCATATTGCAAGCTTCTGTTCTGAAATCCATCAGGCCGTGGGGCAGCGCTTGACTGGTGGCTTTGGTGGAATGACTTGCCAGGATATGCAGCCACTTAGTTTATCAATGAGCCCTGGTTCTCAATCTAGCTGTGTTACTGCTCCCAGCCAAATTTCTCAAGCTGGACCAGATTGTGCAACTGTGGAAACAAAGAAGAGAAGCTCTGCCAAATTGGGTCAGAAGCAAACTGTTCATAGGAAGTCCCTTGACACTTTTGGACAGAGAACTTCACAGTATAGAGGTGTTACTAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAACAGTTGCAAGAAGGAAGGACAAACTAGGAAAGGAAGACAAGTTTATCTTGGGGGCTATGACATGGAGGAGAAGGCAGCAAGAGCTTATGATCTTGCAGCACTGAAGTACTGGGGATCCTCTACACATTTAAACTTCCCATTAAAGAATTATCAGGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATATGTTGCGCACCTCAGGAGGAAAAGTAGTGGATTCTCTAGGGGAGCTTCAATGTACAGAGGAGTCACTAGACATCACCAGCATGGTAGATGGCAAGCACGGATTGGAAGAGTTGCAGGAAATAAAGACCTGTACCTTGGAACATTTGGCACACAAGAGGAAGCTGCTGAAGCTTATGATATAGCCGCTATCAAGTTTCGGGGCACAAATGCGGTTACAAATTTCGACACTACAAGGTATGACGTAGAAAGGATAATGGCCAGCAGCAGTCTCCTTTCAGGAGAGCTTGCTAGAAGACACAGAGAGCTGAAACCAACCAATGCTGTAGACGACGGAGAACCAATACAGAACATAACCGAAATCGACCCCTCGGAGATTTCCAATGGCAACAATTTAGATTGGAGAACAATATTCCACGATTCCCTGCCGCTACAACCAAATGCATCAGTTGTAGATCAAAAGTCAATGAACTCTGGTGGTTACTTGAATCCTACTTCCTCAATGGCTCTACACCATCTGATCGGTATCGAATCGGGATGTTTCCATCAGCCAGTGGTGAATGATACAACCAAGTTCAAAGCACATTTCTCCAATGCTTCCTCTGTGGTGAGCAGCCTCAGCAGTTCAAGGGAGGCAAGTCCTGATAAGTCCAATGCCTCCTCAATGTTATTTGCTAAAGCTCCATTGGCATCAAAGTCCATTGTTCCAACAAGTAATGGTAGCATTTGGCTCCCCTCAACCCATACGAGGCCTACTTCGATTTCTTTCGCTGAATTGCCGCTTTCTTCTATTTGGAACGACGCCTAA 1773 43.49 MKSDQAAVSNAMFLASQLHSSGFSYKLEGNGDLHSPLSVMPLKSDGSLGIMEAITRSQSQEIIPSLSPKLEDFLGCATHGREATTALSLDSIYYNQNAEPDSEMEISLDLFKQQEQQHILLHSQRYYSGVPCHGIYQFPFEEAAKESHIASFCSEIHQAVGQRLTGGFGGMTCQDMQPLSLSMSPGSQSSCVTAPSQISQAGPDCATVETKKRSSAKLGQKQTVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGSSTHLNFPLKNYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGTNAVTNFDTTRYDVERIMASSSLLSGELARRHRELKPTNAVDDGEPIQNITEIDPSEISNGNNLDWRTIFHDSLPLQPNASVVDQKSMNSGGYLNPTSSMALHHLIGIESGCFHQPVVNDTTKFKAHFSNASSVVSSLSSSREASPDKSNASSMLFAKAPLASKSIVPTSNGSIWLPSTHTRPTSISFAELPLSSIWNDA 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3144113 3146883 - evm.model.ptg000002l.1125 HCH12g0534 555381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0534 590 FunFam AP2-like ethylene-responsive transcription factor 339 400 - -
HCH12g0534 590 ProSiteProfiles AP2/ERF domain profile. 340 398 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 CDD AP2 339 400 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 Pfam AP2 domain 341 390 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 Pfam AP2 domain 238 296 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 SUPERFAMILY DNA-binding domain 339 399 IPR016177 GO:0003677(InterPro)
HCH12g0534 590 PRINTS Ethylene responsive element binding protein signature 239 250 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 PRINTS Ethylene responsive element binding protein signature 380 400 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 CDD AP2 237 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 SMART rav1_2 238 310 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 SMART rav1_2 340 404 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 ProSiteProfiles AP2/ERF domain profile. 238 304 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 Gene3D AP2/ERF domain 237 306 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 Gene3D AP2/ERF domain 340 400 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH12g0534 590 FunFam AP2-like ethylene-responsive transcription factor ANT 237 306 - -
HCH12g0534 590 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 187 438 - -
HCH12g0534 590 SUPERFAMILY DNA-binding domain 237 305 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0534 HCH-Chr12:3144113 HCH6g0075 HCH-Chr6:918144 5.70E-102 dispersed
HCH12g0534 HCH-Chr12:3144113 HCH14g0388 HCH-Chr14:32888056 2.10E-136 wgd
HCH12g0534 HCH-Chr12:3144113 HCH4g0569 HCH-Chr4:3729795 1.20E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32678 PF00847 AP2 2.30E-13 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0534 K09285 - csv:101212143 740.339