Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0534 | ATGAAATCTGATCAGGCAGCTGTCTCTAATGCAATGTTCTTAGCTTCTCAGTTACATAGTTCAGGATTTAGTTATAAACTTGAAGGAAATGGAGATTTGCATTCTCCTTTGTCTGTGATGCCTCTAAAATCAGATGGTTCTCTTGGTATCATGGAAGCAATTACTAGATCACAATCTCAAGAAATAATACCAAGTCTGTCTCCAAAGCTTGAGGACTTTCTTGGTTGTGCAACTCATGGAAGAGAAGCAACAACAGCTCTAAGCTTAGACAGCATCTATTACAATCAAAATGCTGAGCCAGACTCAGAAATGGAAATCTCTTTGGACCTTTTCAAGCAACAAGAGCAACAACACATTTTACTTCATTCACAAAGATACTATTCTGGAGTTCCCTGCCATGGAATCTACCAATTTCCATTTGAGGAAGCAGCAAAGGAATCTCATATTGCAAGCTTCTGTTCTGAAATCCATCAGGCCGTGGGGCAGCGCTTGACTGGTGGCTTTGGTGGAATGACTTGCCAGGATATGCAGCCACTTAGTTTATCAATGAGCCCTGGTTCTCAATCTAGCTGTGTTACTGCTCCCAGCCAAATTTCTCAAGCTGGACCAGATTGTGCAACTGTGGAAACAAAGAAGAGAAGCTCTGCCAAATTGGGTCAGAAGCAAACTGTTCATAGGAAGTCCCTTGACACTTTTGGACAGAGAACTTCACAGTATAGAGGTGTTACTAGACATAGATGGACTGGTAGATATGAGGCTCATTTGTGGGATAACAGTTGCAAGAAGGAAGGACAAACTAGGAAAGGAAGACAAGTTTATCTTGGGGGCTATGACATGGAGGAGAAGGCAGCAAGAGCTTATGATCTTGCAGCACTGAAGTACTGGGGATCCTCTACACATTTAAACTTCCCATTAAAGAATTATCAGGTTGAAATTGAAGAAATGAAGAACATGAACCGCCAAGAATATGTTGCGCACCTCAGGAGGAAAAGTAGTGGATTCTCTAGGGGAGCTTCAATGTACAGAGGAGTCACTAGACATCACCAGCATGGTAGATGGCAAGCACGGATTGGAAGAGTTGCAGGAAATAAAGACCTGTACCTTGGAACATTTGGCACACAAGAGGAAGCTGCTGAAGCTTATGATATAGCCGCTATCAAGTTTCGGGGCACAAATGCGGTTACAAATTTCGACACTACAAGGTATGACGTAGAAAGGATAATGGCCAGCAGCAGTCTCCTTTCAGGAGAGCTTGCTAGAAGACACAGAGAGCTGAAACCAACCAATGCTGTAGACGACGGAGAACCAATACAGAACATAACCGAAATCGACCCCTCGGAGATTTCCAATGGCAACAATTTAGATTGGAGAACAATATTCCACGATTCCCTGCCGCTACAACCAAATGCATCAGTTGTAGATCAAAAGTCAATGAACTCTGGTGGTTACTTGAATCCTACTTCCTCAATGGCTCTACACCATCTGATCGGTATCGAATCGGGATGTTTCCATCAGCCAGTGGTGAATGATACAACCAAGTTCAAAGCACATTTCTCCAATGCTTCCTCTGTGGTGAGCAGCCTCAGCAGTTCAAGGGAGGCAAGTCCTGATAAGTCCAATGCCTCCTCAATGTTATTTGCTAAAGCTCCATTGGCATCAAAGTCCATTGTTCCAACAAGTAATGGTAGCATTTGGCTCCCCTCAACCCATACGAGGCCTACTTCGATTTCTTTCGCTGAATTGCCGCTTTCTTCTATTTGGAACGACGCCTAA | 1773 | 43.49 | MKSDQAAVSNAMFLASQLHSSGFSYKLEGNGDLHSPLSVMPLKSDGSLGIMEAITRSQSQEIIPSLSPKLEDFLGCATHGREATTALSLDSIYYNQNAEPDSEMEISLDLFKQQEQQHILLHSQRYYSGVPCHGIYQFPFEEAAKESHIASFCSEIHQAVGQRLTGGFGGMTCQDMQPLSLSMSPGSQSSCVTAPSQISQAGPDCATVETKKRSSAKLGQKQTVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGSSTHLNFPLKNYQVEIEEMKNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGTNAVTNFDTTRYDVERIMASSSLLSGELARRHRELKPTNAVDDGEPIQNITEIDPSEISNGNNLDWRTIFHDSLPLQPNASVVDQKSMNSGGYLNPTSSMALHHLIGIESGCFHQPVVNDTTKFKAHFSNASSVVSSLSSSREASPDKSNASSMLFAKAPLASKSIVPTSNGSIWLPSTHTRPTSISFAELPLSSIWNDA | 590 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3144113 | 3146883 | - | evm.model.ptg000002l.1125 | HCH12g0534 | 555381 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0534 | 590 | FunFam | AP2-like ethylene-responsive transcription factor | 339 | 400 | - | - | |
HCH12g0534 | 590 | ProSiteProfiles | AP2/ERF domain profile. | 340 | 398 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | CDD | AP2 | 339 | 400 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | Pfam | AP2 domain | 341 | 390 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | Pfam | AP2 domain | 238 | 296 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | SUPERFAMILY | DNA-binding domain | 339 | 399 | IPR016177 | GO:0003677(InterPro) | |
HCH12g0534 | 590 | PRINTS | Ethylene responsive element binding protein signature | 239 | 250 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | PRINTS | Ethylene responsive element binding protein signature | 380 | 400 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | CDD | AP2 | 237 | 304 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | SMART | rav1_2 | 238 | 310 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | SMART | rav1_2 | 340 | 404 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | ProSiteProfiles | AP2/ERF domain profile. | 238 | 304 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | Gene3D | AP2/ERF domain | 237 | 306 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | Gene3D | AP2/ERF domain | 340 | 400 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH12g0534 | 590 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 237 | 306 | - | - | |
HCH12g0534 | 590 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 187 | 438 | - | - | |
HCH12g0534 | 590 | SUPERFAMILY | DNA-binding domain | 237 | 305 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0534 | HCH-Chr12:3144113 | HCH6g0075 | HCH-Chr6:918144 | 5.70E-102 | dispersed | |
HCH12g0534 | HCH-Chr12:3144113 | HCH14g0388 | HCH-Chr14:32888056 | 2.10E-136 | wgd | |
HCH12g0534 | HCH-Chr12:3144113 | HCH4g0569 | HCH-Chr4:3729795 | 1.20E-163 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32678 | PF00847 | AP2 | 2.30E-13 | CL0081 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0534 | K09285 | - | csv:101212143 | 740.339 |