Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0544 ATGCCGATGTACCAGCCATCCTGTCGGAGAAGGGAATCCGATGTGGAGCTTGGTGTGGGTGGTGGTGGGCAAGTTCTTGACGTTGAAACCGCCGTCAAAGATGGTATTCTAGGTGGCGGAGGCGGGTTAATCTGCGACGGCGGCGGTGGCGAGAAATTGGATCTGAAAGAAATGATTGATGAGCTCGAGAATATTGATGTTCCTTCTGTATTTATTTGCCCTATTTCATTGGAGCCAATGAGAGATCCTGTGACCCTTTGCACTGGCCAAACTTATGAAAGATCCAATATTCTTAAATGGTTTTCTTTGGGTCATTTTACATGTCCTACCACAATGCAAGAGCTTTGGGATGATTCAATCACACCCAATAAGACTCTTCATCAGCTGATTCATAGTTGGTTTTCTCAGAAATATTTGGCAATGAAGAAGAGGTCTGAGGATGTCCAAGGGCGTGCTTTGGAGCTCTTGGAAACATTGAAAAGGGTTAAAGGTCAAACTAGAGTCCGAGCTTTGAAAGAGCTTCGACAAGTCGTGGCCTCGAATTCTTCGGCTAAGAAAACTGTAGAAGAAAATGGTGCTCTTGCTTTGATTTCTTCCTTGTTGGGCCCTTTTACTTCCCACGCTGTTGGCTCAGAGGCCATTGGAATTCTTGTGAACTTGGATCTTGATTCGGAGTCGAGGAGGAATCTAATTCAACCTGCGAAAATTTCGTTGATGGTGGATATGTTGAATGAGGGATGCTCTGAGACGAAGATTAACTGCACTAAATTGATTGAAACCTTGATGGAAGGTGAGGATTGTGGAGCTGAGAATGTCTCGAGTTTGTGTCTTTTAGTTGGATTGCTGAGATTGATCAAGGAGAAGAAACACCCAAATGGGGTATTGGCTGGACTTAGATTGCTCAAGACTATATGTTCACATGAACCAGTGAGGAATTCAGTAGTGAGCATTGGGGCTGTCTCTCAGTTAGTTGAAATCTTACCAAATTTTGAGTCAGAATGTTTGGAATTAGCTCTTCACGTATTGGAATCACTATCATCCCTTTCCGAGGGTCGATTGGCTTTGAAAAATTGCCCCAATACGATTCCCAGTTTAGTAAAGTTGTTGATGAAAGTTTCAGAAAACTGTACTCAGCTTGCTTTGTCAATCTTGTGGGCGGTTTGTAAACTAGCTCCTGAAGAATGTGCTTCACAAGCTGTGGAGGCTGGTTTAGCGGCGAAGCTTCTTCTGGTGATTCAGAGCGGCTGCAATCCAGTTCTAAAGCAGCGCTCGGCCGAGCTTCTGAAATTGTGTAGCCTAAATTACACAGCAACTCTCTTCATTTCCAAGTGCAAGCTTACAAGGACAATACAATAA 1356 43.88 MPMYQPSCRRRESDVELGVGGGGQVLDVETAVKDGILGGGGGLICDGGGGEKLDLKEMIDELENIDVPSVFICPISLEPMRDPVTLCTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNKTLHQLIHSWFSQKYLAMKKRSEDVQGRALELLETLKRVKGQTRVRALKELRQVVASNSSAKKTVEENGALALISSLLGPFTSHAVGSEAIGILVNLDLDSESRRNLIQPAKISLMVDMLNEGCSETKINCTKLIETLMEGEDCGAENVSSLCLLVGLLRLIKEKKHPNGVLAGLRLLKTICSHEPVRNSVVSIGAVSQLVEILPNFESECLELALHVLESLSSLSEGRLALKNCPNTIPSLVKLLMKVSENCTQLALSILWAVCKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQRSAELLKLCSLNYTATLFISKCKLTRTIQ 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3196972 3198327 - evm.model.ptg000002l.1115 HCH12g0544 555391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0544 451 Gene3D - 141 437 IPR011989 -
HCH12g0544 451 Pfam U-box domain 67 137 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH12g0544 451 ProSiteProfiles U-box domain profile. 66 140 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH12g0544 451 SUPERFAMILY RING/U-box 62 137 - -
HCH12g0544 451 PANTHER WDSAM1 PROTEIN 64 446 IPR045185 GO:0061630(InterPro)
HCH12g0544 451 SMART Ubox_2 70 133 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH12g0544 451 CDD RING-Ubox_PUB 68 118 IPR045210 -
HCH12g0544 451 SUPERFAMILY ARM repeat 141 434 IPR016024 -
HCH12g0544 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 140 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0544 HCH-Chr12:3196972 HCH14g0146 HCH-Chr14:24583284 2.70E-35 dispersed
HCH2g0261 HCH-Chr2:38962933 HCH12g0544 HCH-Chr12:3196972 4.20E-32 transposed
HCH12g0544 HCH-Chr12:3196972 HCH4g0575 HCH-Chr4:3792405 6.20E-157 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0544 - - - 0.0