Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0546 | ATGGCTCGGCTCGTTTTCCGATTCTGCATTTTCTTCCTTCTTCTTTTGCAGCTTTCTCTCTCCTATTCTCCTGTCAAATTTCTCCCTGGATTTCATGGTCCTCTTCCCTTCCAACTCGAAACTGGATATGTGGGAGTGGGGGATTCAGAGGAAGTACAACTATTTTACTATTTCACAAAGTCAGAAGGAAATCCCGAAAATGACCCTCTCCTTCTTTGGTTTACTGGTGGCCCCGGTTGCTCTGCTTTATCTGGACTTGCCTATGAAATTGGTCCAATTAATTTTAAAATACAACCTTATAACGGGAGCCTCCCTCGATTAATTATCAACCCTTATTCATGGACTAAGAAATCAAATATACTTTTTATAGATTTGCCAGTGGGCACTGGTTTTTCATACGGTAAAACTCCACAAGCTTTTAAGACTGGAGACTCCAATCAAGTTCATCATTCACATCAGTTTTTGAGAAAGTGGTTGATCGACCATCCTGAATTCATTTCAAATCCATTCTATGTTGGTGGCGACTCTTACTCTGGTCTTATAGTTCCGGTTGTTGCACAAGAAATCTTAGAAGGAAATAATCATGCTTTGCCATTCGTAAATCTTCAGGGATACATATTGGGGAATGCAATCACTATACGTGGTTCACATATCAATTTTGAGGTCCCTTTTGCTCATAGAATGACTCTAATCTCTGATGAATTGTTCGAGTCATTGACAAGAAGCTGCAAAGGAGACTACTTGAACATTGATCCAAGCAATGTTGAATGTTTAAGACATTATGATACTTTTAAAAAGAGTACTTCAAAACTCGAGGGAACACATATTCTATTGCGCAAATGTCCACCGATATCTCCCACGCAAAAAGATATGTTCGGTCGAAGATCTCTCTACAACACCCCTAAAGTGTTCCTTGATCCAAAGCCACAACTTCCTTCTAATTTTGACTGCCCTGCTTATAAGTTTTTGCTTGCTTACTATTGGGCGAATGACGATCAAGTTCGAAAAGCACTTCACATACACGAGGGAAGCATCGGAGAATGGATACGATGCAATTTCAAACTAGATTACAATTTCGATATCGACAATGTTTTACCATATCATGTCAACCTTAGTGCCAAAGGTTACAGAACTTTGATCTACAGTGGAGACCATGACATGTTGGTGTCTCATTTGGACACTCAAGCATGGATTAGATCTTTAAATTATTCCATTATCGAGGACTGGAGACCATGGTTCATCGCCGATCAAGTAGCCGGGTACACGAGAACTTACGCAAATAAGATGACGTTTGCGACGATAAAGGGTGGAGGGCACACAGCAGAGTACTCACAGAAAGAATGCAGCATACCGTTTATTAGATGGATATCTGGAGAAGCTCTGTAA | 1386 | 40.33 | MARLVFRFCIFFLLLLQLSLSYSPVKFLPGFHGPLPFQLETGYVGVGDSEEVQLFYYFTKSEGNPENDPLLLWFTGGPGCSALSGLAYEIGPINFKIQPYNGSLPRLIINPYSWTKKSNILFIDLPVGTGFSYGKTPQAFKTGDSNQVHHSHQFLRKWLIDHPEFISNPFYVGGDSYSGLIVPVVAQEILEGNNHALPFVNLQGYILGNAITIRGSHINFEVPFAHRMTLISDELFESLTRSCKGDYLNIDPSNVECLRHYDTFKKSTSKLEGTHILLRKCPPISPTQKDMFGRRSLYNTPKVFLDPKPQLPSNFDCPAYKFLLAYYWANDDQVRKALHIHEGSIGEWIRCNFKLDYNFDIDNVLPYHVNLSAKGYRTLIYSGDHDMLVSHLDTQAWIRSLNYSIIEDWRPWFIADQVAGYTRTYANKMTFATIKGGGHTAEYSQKECSIPFIRWISGEAL | 461 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3204892 | 3208019 | + | evm.model.ptg000002l.1113 | HCH12g0546 | 555393 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0546 | 461 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 110 | 122 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
HCH12g0546 | 461 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 158 | 183 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
HCH12g0546 | 461 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 429 | 442 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
HCH12g0546 | 461 | PRINTS | Carboxypeptidase C serine protease (S10) family signature | 123 | 133 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
HCH12g0546 | 461 | Pfam | Serine carboxypeptidase | 29 | 457 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro) | |
HCH12g0546 | 461 | PANTHER | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE | 24 | 448 | IPR001563 | GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER) | |
HCH12g0546 | 461 | Gene3D | alpha/beta hydrolase | 32 | 460 | IPR029058 | - | |
HCH12g0546 | 461 | SUPERFAMILY | alpha/beta-Hydrolases | 25 | 455 | IPR029058 | - | |
HCH12g0546 | 461 | FunFam | Serine carboxypeptidase-like 11 | 19 | 461 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0546 | HCH-Chr12:3204892 | HCH12g0548 | HCH-Chr12:3214377 | 1.60E-221 | dispersed | |
HCH12g0546 | HCH-Chr12:3204892 | HCH12g0547 | HCH-Chr12:3210786 | 4.00E-228 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0546 | K16296 | - | csv:101210918 | 578.17 |