Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0546 ATGGCTCGGCTCGTTTTCCGATTCTGCATTTTCTTCCTTCTTCTTTTGCAGCTTTCTCTCTCCTATTCTCCTGTCAAATTTCTCCCTGGATTTCATGGTCCTCTTCCCTTCCAACTCGAAACTGGATATGTGGGAGTGGGGGATTCAGAGGAAGTACAACTATTTTACTATTTCACAAAGTCAGAAGGAAATCCCGAAAATGACCCTCTCCTTCTTTGGTTTACTGGTGGCCCCGGTTGCTCTGCTTTATCTGGACTTGCCTATGAAATTGGTCCAATTAATTTTAAAATACAACCTTATAACGGGAGCCTCCCTCGATTAATTATCAACCCTTATTCATGGACTAAGAAATCAAATATACTTTTTATAGATTTGCCAGTGGGCACTGGTTTTTCATACGGTAAAACTCCACAAGCTTTTAAGACTGGAGACTCCAATCAAGTTCATCATTCACATCAGTTTTTGAGAAAGTGGTTGATCGACCATCCTGAATTCATTTCAAATCCATTCTATGTTGGTGGCGACTCTTACTCTGGTCTTATAGTTCCGGTTGTTGCACAAGAAATCTTAGAAGGAAATAATCATGCTTTGCCATTCGTAAATCTTCAGGGATACATATTGGGGAATGCAATCACTATACGTGGTTCACATATCAATTTTGAGGTCCCTTTTGCTCATAGAATGACTCTAATCTCTGATGAATTGTTCGAGTCATTGACAAGAAGCTGCAAAGGAGACTACTTGAACATTGATCCAAGCAATGTTGAATGTTTAAGACATTATGATACTTTTAAAAAGAGTACTTCAAAACTCGAGGGAACACATATTCTATTGCGCAAATGTCCACCGATATCTCCCACGCAAAAAGATATGTTCGGTCGAAGATCTCTCTACAACACCCCTAAAGTGTTCCTTGATCCAAAGCCACAACTTCCTTCTAATTTTGACTGCCCTGCTTATAAGTTTTTGCTTGCTTACTATTGGGCGAATGACGATCAAGTTCGAAAAGCACTTCACATACACGAGGGAAGCATCGGAGAATGGATACGATGCAATTTCAAACTAGATTACAATTTCGATATCGACAATGTTTTACCATATCATGTCAACCTTAGTGCCAAAGGTTACAGAACTTTGATCTACAGTGGAGACCATGACATGTTGGTGTCTCATTTGGACACTCAAGCATGGATTAGATCTTTAAATTATTCCATTATCGAGGACTGGAGACCATGGTTCATCGCCGATCAAGTAGCCGGGTACACGAGAACTTACGCAAATAAGATGACGTTTGCGACGATAAAGGGTGGAGGGCACACAGCAGAGTACTCACAGAAAGAATGCAGCATACCGTTTATTAGATGGATATCTGGAGAAGCTCTGTAA 1386 40.33 MARLVFRFCIFFLLLLQLSLSYSPVKFLPGFHGPLPFQLETGYVGVGDSEEVQLFYYFTKSEGNPENDPLLLWFTGGPGCSALSGLAYEIGPINFKIQPYNGSLPRLIINPYSWTKKSNILFIDLPVGTGFSYGKTPQAFKTGDSNQVHHSHQFLRKWLIDHPEFISNPFYVGGDSYSGLIVPVVAQEILEGNNHALPFVNLQGYILGNAITIRGSHINFEVPFAHRMTLISDELFESLTRSCKGDYLNIDPSNVECLRHYDTFKKSTSKLEGTHILLRKCPPISPTQKDMFGRRSLYNTPKVFLDPKPQLPSNFDCPAYKFLLAYYWANDDQVRKALHIHEGSIGEWIRCNFKLDYNFDIDNVLPYHVNLSAKGYRTLIYSGDHDMLVSHLDTQAWIRSLNYSIIEDWRPWFIADQVAGYTRTYANKMTFATIKGGGHTAEYSQKECSIPFIRWISGEAL 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3204892 3208019 + evm.model.ptg000002l.1113 HCH12g0546 555393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0546 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0546 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0546 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 429 442 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0546 461 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0546 461 Pfam Serine carboxypeptidase 29 457 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0546 461 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 448 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
HCH12g0546 461 Gene3D alpha/beta hydrolase 32 460 IPR029058 -
HCH12g0546 461 SUPERFAMILY alpha/beta-Hydrolases 25 455 IPR029058 -
HCH12g0546 461 FunFam Serine carboxypeptidase-like 11 19 461 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0546 HCH-Chr12:3204892 HCH12g0548 HCH-Chr12:3214377 1.60E-221 dispersed
HCH12g0546 HCH-Chr12:3204892 HCH12g0547 HCH-Chr12:3210786 4.00E-228 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0546 K16296 - csv:101210918 578.17