Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0547 ATGGCCACACTCTTTTTCCATTTCCTTCTTCTTCTTCTTCTCCATCTTCTTCTTATTTTGCAGGTTTTCTCTCACAATGCATTCTCTTATCATACAATCAAGTTTCTCCCTGGATTCCATGCTCCTCTCCCCTTCCAACTTCAAACTGGATATGTGGGAGTGGGAGATTCAGAGGAAGTCCAACTATTTTATTATTTCATAAAGTCAGAAGGAAATCCTGAAAATGACCCTCTCATTCTATGGTTTACTGGTGGCCCTGGTTGCTCTGCTTTATCTGGACTTACCTTTGAAATTGGTCCTCTTAATTTTAAGATCGAACATTATAATGGAAGCCTACCTCAATTGATATTAAATCCGTACTCGTGGACAAAGAAATCAAGTATATTATTTATAGATTTACCGGTTGGCACTGGATTTTCATATGGTCAAAATCCACAAGCTTTTAAGACTGGAGACTTGAGTCAAGTTCACCATTCTCTTCAGTTTTTGAGAAAGTGGTTGATTGATCATCCAGAATTCATATCGAATTCATTCTATGTTGGTGGAGATTCATACTCCGGTCTTATCGTTCCCGTTGTTGCTCATGAAATCGTAGAAGGAAATAAACATGCTTTGCCATTCATAAATCTTCAGGGATACATATTGGGGAATCCAGCCACTATACGTGATTCATATATAAATTTTGAGGTTCCTTTTGCTCATAGAATGACACTCATCTCTGATGAGTTATTTGAGGCATTGACAGTAAGCTGTAAAGGAGAATACTTGAACATTGATCCAAGTAACGTCGAGTGTTTAAGACATTATGATACTTTTGAAGAGTGTACTTCGAAACTCCAGGAAGGACATATTCTGTTGCCTAAATGTCCTACGATGTCTCCCAAGCAACACGATATGTCGAATCGAAGATCTCTCTACAAAACTCCCAAAGTGTTCCTTGATCCAAAGCCACCACTTCCTTCTTTTGGCTGTCCTACTTACAAGTCTTTGCTTGCTTACTATTGGGCAAATAACGATCGAGTTCGAAAAGCACTTCACATACGCGAGGGAAGTATTGGAGAATGGATAAGATGCAGCAAAGAACTGGATTACCAGAATGACATTGACAATGCTGTACCATATCATGCTAACCTTAGTGCTAAAGGTTACCGCTCTCTGGTCTACAGTGGGGATCATGACATGTTGATTTGCCATTTGGACACTCAAGCATGGATTAAATCTTTAAATTATTCCATTGTCGACGACTGGAGACCATGGTTCATCGTCGATCAAGTAGCTGGGTACACAAGAACTTATGCAAACAAGATGACTTTTGCAACCATAAAGGGTGGAGGGCACACAGTAGAGTACACACAAAAAGAAGGCAGTATAATGTTTAGCAGATGGATATCTGGAGAACCCTTGTAA 1407 39.45 MATLFFHFLLLLLLHLLLILQVFSHNAFSYHTIKFLPGFHAPLPFQLQTGYVGVGDSEEVQLFYYFIKSEGNPENDPLILWFTGGPGCSALSGLTFEIGPLNFKIEHYNGSLPQLILNPYSWTKKSSILFIDLPVGTGFSYGQNPQAFKTGDLSQVHHSLQFLRKWLIDHPEFISNSFYVGGDSYSGLIVPVVAHEIVEGNKHALPFINLQGYILGNPATIRDSYINFEVPFAHRMTLISDELFEALTVSCKGEYLNIDPSNVECLRHYDTFEECTSKLQEGHILLPKCPTMSPKQHDMSNRRSLYKTPKVFLDPKPPLPSFGCPTYKSLLAYYWANNDRVRKALHIREGSIGEWIRCSKELDYQNDIDNAVPYHANLSAKGYRSLVYSGDHDMLICHLDTQAWIKSLNYSIVDDWRPWFIVDQVAGYTRTYANKMTFATIKGGGHTVEYTQKEGSIMFSRWISGEPL 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3210786 3214105 + evm.model.ptg000002l.1112 HCH12g0547 555394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0547 468 FunFam Serine carboxypeptidase-like 11 27 468 - -
HCH12g0547 468 Gene3D alpha/beta hydrolase 27 299 IPR029058 -
HCH12g0547 468 Pfam Serine carboxypeptidase 37 465 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0547 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0547 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0547 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 436 449 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0547 468 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0547 468 FunFam Carboxypeptidase 323 467 - -
HCH12g0547 468 SUPERFAMILY alpha/beta-Hydrolases 33 467 IPR029058 -
HCH12g0547 468 Gene3D - 324 468 - -
HCH12g0547 468 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 462 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0547 HCH-Chr12:3210786 HCH5g0425 HCH-Chr5:2815330 1.40E-180 dispersed
HCH12g0546 HCH-Chr12:3204892 HCH12g0547 HCH-Chr12:3210786 4.00E-228 tandem
HCH12g0547 HCH-Chr12:3210786 HCH12g0548 HCH-Chr12:3214377 5.50E-225 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0547 K16296 - csv:101207623 589.726