Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0548 ATGGCCGGAATCGTTTTTCGTTTCTTCAAACTTGTTCTTCTTTTGCAACTCTTTTCTCGCCCCGTTTTCTCACACTTTACGCTTGAGTTTCTCCCGGGATTCCAAGGTCCTCTTCCCTTCCAACTTGAAACCGGATATGTGGGATTGGGAGATTCAGAGGAAGTCCAGCTATTTTACTATTTCATTAAGTCAGAAGGAAATCCCGAAAATGACCCTCTCATTCTATGGTTTACCGGTGGCCCCGGTTGCTCTGCTTTAACTGGACTTGCCTTTGAAATTGGTCCTCTTGAATTTAAGATAGAACCTTATAACGGGAGTCTCCCTCGATTGATATTAAACCCCTACTCATGGACAAAGAAATCAAGTATAATATTTATAGATTTACCAGTTGGCACTGGATTTTCATATGGTCAAAATCCACAAGCTTTCAAGACTGGAGACTTCAGTCAAATTCACCATTCTCTTCAGTTTTTGAGAAAGTGGTGGATTGATCATCCCGAATTCATATCGAATCCGTTCTATCTTGGTGGAGATTCTTTTTCGGGTATGATAGTTCCCGTTGTCGCTCAAGAAATCTTAGAAGGTAACAAGCATTCTTTGCCATTTGTAAATCTTAAGGGATACATATTGGGGAATCCTCTCACTATAAGCAACTCGAATATAAATTTTGCCGTCCCTTTCGCGCATCGGATGACTCTCATCTCGGATGAATTGTTTGAGTCACTAACAAGCAGCTGCAAAGGAGAATATGTGAACATTGATCCAAGTAATGTCAATTGTTTAAGACATTACGATTCCTACAAAAAGTGTACTTCGAAACTCAACGATGCAAATATTTTGTCGATGGCATGTAAAGAAACGTCTCCAAAGCAACATGATGCGCCTGGTCGACGATCTCTCTACAACACCCCTAAATTGTTCCTTGACTCAAATCCATCACTTCCTGCAATTGGCTGTCCTAGTTACAAGTCTTCACTTGCTTACTATTGGGCTAATGACAATCAAGTTCGAAAAGCACTTCACATACACGAGGGAAGCATTGTAGAATGGATAAGATGCAATCGTGAACTAGATTACAAATTTGATATTGACAGTACTATACCATATCATGTTAACCTTAGTTCTAAAGGTTACCGCTCTTTGGTCTACAGTGGAGATCATGACATGTTGATTTGTCATTTGGACACTCAAGCATGGATTAGATCTTTAAATGTTTCCATTATCGATGATTGGAGACCGTGGTTCATCGCCAATCAAGTAGCTGGGTACACAAGAAGTTATGCAAATAAGATGACATTTGCAACCATAAAGGGTGGAGGGCACACAGCAGAATACTCACGAAAAGAATGTAGTATAGCATTTAGTAGGTGGATATCTGAAGAATCCTTATAA 1392 39.87 MAGIVFRFFKLVLLLQLFSRPVFSHFTLEFLPGFQGPLPFQLETGYVGLGDSEEVQLFYYFIKSEGNPENDPLILWFTGGPGCSALTGLAFEIGPLEFKIEPYNGSLPRLILNPYSWTKKSSIIFIDLPVGTGFSYGQNPQAFKTGDFSQIHHSLQFLRKWWIDHPEFISNPFYLGGDSFSGMIVPVVAQEILEGNKHSLPFVNLKGYILGNPLTISNSNINFAVPFAHRMTLISDELFESLTSSCKGEYVNIDPSNVNCLRHYDSYKKCTSKLNDANILSMACKETSPKQHDAPGRRSLYNTPKLFLDSNPSLPAIGCPSYKSSLAYYWANDNQVRKALHIHEGSIVEWIRCNRELDYKFDIDSTIPYHVNLSSKGYRSLVYSGDHDMLICHLDTQAWIRSLNVSIIDDWRPWFIANQVAGYTRSYANKMTFATIKGGGHTAEYSRKECSIAFSRWISEESL 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3214377 3217996 - evm.model.ptg000002l.1111 HCH12g0548 555395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0548 463 Pfam Serine carboxypeptidase 32 459 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0548 463 Gene3D - 318 462 - -
HCH12g0548 463 FunFam Carboxypeptidase 318 462 - -
HCH12g0548 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 457 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)|GO:0016747(PANTHER)|GO:0019748(PANTHER)
HCH12g0548 463 FunFam Serine carboxypeptidase-like 11 22 463 - -
HCH12g0548 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0548 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 431 444 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0548 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0548 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185(InterPro)|GO:0006508(InterPro)
HCH12g0548 463 Gene3D alpha/beta hydrolase 24 294 IPR029058 -
HCH12g0548 463 SUPERFAMILY alpha/beta-Hydrolases 30 459 IPR029058 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0546 HCH-Chr12:3204892 HCH12g0548 HCH-Chr12:3214377 1.60E-221 dispersed
HCH12g0548 HCH-Chr12:3214377 HCH5g0425 HCH-Chr5:2815330 1.90E-177 dispersed
HCH12g0548 HCH-Chr12:3214377 HCH12g0550 HCH-Chr12:3222673 2.00E-30 proximal
HCH12g0547 HCH-Chr12:3210786 HCH12g0548 HCH-Chr12:3214377 5.50E-225 tandem
HCH12g0548 HCH-Chr12:3214377 HCH12g0549 HCH-Chr12:3219401 2.70E-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0548 K16296 - csv:101210918 585.874