Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0557 ATGGAAAGTTATTTGAATGATAATTTTGGGGATGTCAAACCTAAGAATTCAACAGATGAAGCGCTTCAGAGATGGAGACGCCTCTGTTGGTTAGTTAAGAATCGCAAACGGAGGTTTCGTTTTACTGCTAATCTTTCTAAACGTTTTGAAGCTGACGCTATTAGACGCTCCAATCAGGAGAAGTTCAGAGTCGCAGTATTGGTTTCACAGGCTGCGCTTCAATTCATCAATGGGTTGGAATTGTCTACTGATTACGTTGTGCCTGAAGAAGTTAGAAAGGAAGGTTTTGAAATTTGTGCGGATGAAGCGTCCACCATTGTCGACGGCCGTGACGTGAAGAAACTTAAGATTCATGGAGGGGTTGAGGGTATTGCAACCAAGCTTGCCATATCAACTTCGGATGGTATTCCTACTACAGAGCACTTGATCAAGAAGAGACAAAATGTTTATGGAGTTAACAAATTCACTGAAAGTCCACCTCGAGGTTTTTGGCTCTTTGTTTGGGAAGCTCTCCAGGATACGACTCTAATGATACTTGGATTTTGTGCTGTTGTGTCCCTTCTTGTTGGCATAACAATGGAAGGATGGCCAAAGGGTGCTCATGATGGGCTAGGAATTGTTGCCAGCATCTTGCTTGTTGTATTTGTCACTGCCACCAGTGACTATAGACAATCGCTTCAGTTCAAGGATTTGGACAAGGAAAAGAAAAAAATTGCTGTTCAGGTTACAAGAAGTGGGTGCAGACAAAAGATATCGATATACGAACTGCTTCCGGGTGATATTGTTCATCTTGCCATAGGTGATCAGGTACCAGCTGATGGACTTTTTGTTTCTGGGTATTCTCTTCTGATAAATGAATCCAGTTTAACAGGTGAGAGTGAACCGGTTAACGTATATGATCAGCATCCATTTCTCCTGTCTGGAACAAAGGTTCAAGATGGTTCGTGTAAGATGATAGTGACTTCTGTTGGCATGAGAACCCAATGGGGGAAACTGATGGCTACTCTTAGTGAAGGAGGAGATGATGAGACTCCTTTGCAGGTGAAACTTAATGGGGTGGCAACAATCATCGGGAAAATTGGACTTTTTTTTGCTGTTGTAACTTTTGCTGTATTGGTGCAAGGATTGTTCACTCGCAAGCTTCAAGAAGGGTCTTATTTCAGCTGGTCTGGAGATGAAGCAAGGGAAATTCTGGAATTCTTTGCTATTGCTGTCACGATTGTTGTAGTTGCTGTGCCTGAAGGGCTGCCATTGGCAGTGACACTGAGCCTTGCTTTTGCAATGAAGAAGATGATGAACGATAAGGCACTTGTCAGGAATTTGGCTGCTTGTGAGACGATGGGATCAGCTACTACTATCTGTAGTGACAAAACTGGGACATTGACGACTAACCATATGACTGTTGTGAAAGCCTGCATCTGCGGTAAGGTCAAGGAAGTCAACAGTTCAAAAGCGTGTTCTGATTACCGTTCAGAGCTTCCCGACTCTTCCCTTAGAATTCTACTGCAATCGATATTTAATAACACGGGTGGAGAAATAGTCAAAAACAAAGATGGCGAGAATGAGATAATCGGGACACCCACCGAGTCTGCTATTCTGGAATTTGGACTTTTGCTGGGTGGCGATTTCCAGAAAGAACGCCGATCATTAAGATACGCGAGAGTGGAGCCCTTCAATTCTGTAAAGAAACGAATGGGGATTGTTTTGGAGCTACCAGAAGGTGGCTTCCGCGCCCACTCCAAGGGTGCTTCAGAGATTGTTTTAGCTGCATGTGACAAATTTGTTGACTCTAATGGTGAAGTCGTTCCTCTTGATGATGAGTCCATCAGTTCTTTGAAAGAAACAATCGAACAATTTGCGGGAGAAGCTCTTCGCACATTGTGTCTGGTTTACATGGACATTGAAGGCGAGTATAGCGCTGAAACTCCCATGCCCGTTGATGGTTACACGTGTATAGGAATTGTTGGTATCAAAGATCCTGTCCGTCCCGACGTCAAGGAGTCTGTTGCAATCTGCAAAGCCGCCGGCATAACTGTACGGATGGTTACGGGAGACAACATTACCACTGCGAAGGCAATTGCCAGAGAATGTGGAATTTTGACTGATGATGGTATAGCAATTGAAGGGCCTGAGTTCCGCGAGAAGAATGAGAAAGAATTGAGCGAGATAATACCAAAAATTCAGGTGATGGCTCGATCTTCTCCTATGGATAAACATACTCTTGTAAAGCACTTACGAACCACTTTTCAAGAAGTTGTTGCAGTGACTGGCGATGGCACAAATGATGCTCCTGCGCTTCATGAAGCAGATATTGGATTAGCTATGGGCATTGCTGGAACTGAAGTAGCAAAAGAGAGTGCTGATGTGATTATTCTTGACGACAACTTCTCTACAATTGCTACTGTTGCGAAATGGGGACGTTCAGTTTACATAAATATCCAAAAGTTTGTTCAGTTTCAGCTAACAGTTAATGTGGTTGCACTTCTAGTCAATTTTTCTTCAGCTTGTTTAACAGGAAATGCTCCCCTTACTGCTGTTCAACTACTATGGGTCAACATGATAATGGACACACTAGGAGCACTTGCATTAGCAACTGAACCCCCTAGTGATGACTTGATGAAGAGATTGCCAGTTGGTAGAAGGGGGAACTTCATTAGTAATGTGATGTGGAGAAATATCTTAGGGCAGTCATTATATCAGTTTGTAGTAGTGTGGTATCTCCAAACAAGGGGACAGGCTCTTTTCCGTCTTGATGGCCCGGACTCTGAGTTGATACTGAATACAATGATTTTCAATGCATTTGTCTTTTGTCAGGCTTTCAATGAGATAAGCTCTAGAGATATGGAGAAGATAAATGTGTTTAAAGGCATATTGAAGAACTACGTCTTTGTGGCAGTGCTCACTTGCACTGTTCTTTTCCAAATCATAATAGTCCAGTTCCTGGGAACATTTGCAAACACATATCCTCTAAAGTCCCAGCAATGGTTTATTACTGTGCTGTTTGGATTTCTTGGCATGCCAATTGCAGCAGCTTTGAAGATGATTCCAGTTGGGTCGGACTGA 3063 43.03 MESYLNDNFGDVKPKNSTDEALQRWRRLCWLVKNRKRRFRFTANLSKRFEADAIRRSNQEKFRVAVLVSQAALQFINGLELSTDYVVPEEVRKEGFEICADEASTIVDGRDVKKLKIHGGVEGIATKLAISTSDGIPTTEHLIKKRQNVYGVNKFTESPPRGFWLFVWEALQDTTLMILGFCAVVSLLVGITMEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKIAVQVTRSGCRQKISIYELLPGDIVHLAIGDQVPADGLFVSGYSLLINESSLTGESEPVNVYDQHPFLLSGTKVQDGSCKMIVTSVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLFTRKLQEGSYFSWSGDEAREILEFFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRNLAACETMGSATTICSDKTGTLTTNHMTVVKACICGKVKEVNSSKACSDYRSELPDSSLRILLQSIFNNTGGEIVKNKDGENEIIGTPTESAILEFGLLLGGDFQKERRSLRYARVEPFNSVKKRMGIVLELPEGGFRAHSKGASEIVLAACDKFVDSNGEVVPLDDESISSLKETIEQFAGEALRTLCLVYMDIEGEYSAETPMPVDGYTCIGIVGIKDPVRPDVKESVAICKAAGITVRMVTGDNITTAKAIARECGILTDDGIAIEGPEFREKNEKELSEIIPKIQVMARSSPMDKHTLVKHLRTTFQEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIATVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPSDDLMKRLPVGRRGNFISNVMWRNILGQSLYQFVVVWYLQTRGQALFRLDGPDSELILNTMIFNAFVFCQAFNEISSRDMEKINVFKGILKNYVFVAVLTCTVLFQIIIVQFLGTFANTYPLKSQQWFITVLFGFLGMPIAAALKMIPVGSD 1020
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 3273317 3278066 + evm.model.ptg000002l.1102 HCH12g0557 555404
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0557 1020 Pfam haloacid dehalogenase-like hydrolase 645 770 - -
HCH12g0557 1020 FunFam Calcium-transporting ATPase 217 337 - -
HCH12g0557 1020 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 50 IPR024750 GO:0005516(InterPro)
HCH12g0557 1020 NCBIfam calcium-translocating P-type ATPase, PMCA-type 102 1017 IPR006408 GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro)
HCH12g0557 1020 Gene3D - 17 77 - -
HCH12g0557 1020 Pfam Cation transport ATPase (P-type) 515 593 - -
HCH12g0557 1020 PRINTS P-type cation-transporting ATPase superfamily signature 756 775 - -
HCH12g0557 1020 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
HCH12g0557 1020 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
HCH12g0557 1020 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
HCH12g0557 1020 PRINTS P-type cation-transporting ATPase superfamily signature 780 792 - -
HCH12g0557 1020 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
HCH12g0557 1020 FunFam Calcium-transporting ATPase 17 77 - -
HCH12g0557 1020 Pfam Cation transporting ATPase, C-terminus 841 1015 IPR006068 -
HCH12g0557 1020 SUPERFAMILY Calcium ATPase, transduction domain A 239 334 IPR008250 -
HCH12g0557 1020 SFLD C1.7: P-type atpase like 436 808 - -
HCH12g0557 1020 SFLD p-type atpase 436 808 IPR044492 -
HCH12g0557 1020 FunFam Calcium-transporting ATPase 773 1019 - -
HCH12g0557 1020 CDD P-type_ATPase_Ca_PMCA-like 145 889 - -
HCH12g0557 1020 Gene3D - 464 660 IPR023299 GO:0000166(InterPro)
HCH12g0557 1020 FunFam Calcium-transporting ATPase 464 660 - -
HCH12g0557 1020 FunFam Calcium-transporting ATPase 649 801 - -
HCH12g0557 1020 Gene3D - 141 337 - -
HCH12g0557 1020 SUPERFAMILY HAD-like 452 861 IPR036412 -
HCH12g0557 1020 Gene3D - 169 1015 - -
HCH12g0557 1020 Gene3D - 451 801 IPR023214 -
HCH12g0557 1020 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1016 IPR023298 -
HCH12g0557 1020 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 665 IPR023299 GO:0000166(InterPro)
HCH12g0557 1020 PANTHER CATION TRANSPORTING ATPASE 87 1017 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
HCH12g0557 1020 NCBIfam HAD-IC family P-type ATPase 722 837 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH12g0557 1020 NCBIfam HAD-IC family P-type ATPase 387 514 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH12g0557 1020 NCBIfam HAD-IC family P-type ATPase 206 377 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH12g0557 1020 PRINTS H+-transporting ATPase (proton pump) signature 788 813 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH12g0557 1020 PRINTS H+-transporting ATPase (proton pump) signature 756 772 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH12g0557 1020 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH12g0557 1020 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
HCH12g0557 1020 Pfam Cation transporter/ATPase, N-terminus 118 186 IPR004014 -
HCH12g0557 1020 Pfam E1-E2 ATPase 237 433 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0557 HCH-Chr12:3273317 HCH9g1360 HCH-Chr9:45094899 0.00E+00 dispersed
HCH12g0557 HCH-Chr12:3273317 HCH14g0369 HCH-Chr14:32659956 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0557 K01537 - csv:101221694 1820.44