Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0562 ATGGATTCATTTGGATCAGCTAATTACAGTGAGGGAGAATGGAACTTTTGCAGCTCCATTTTATCATTGGAAGAGCTTGATTTCACACCATATTTTCTTGATCAGCTCCAAGGACTCAGTTCAAGTATTCCTCAAGCTGATATTGGTTTTGCTGGGATTTCTGATACTAATTGGTTTTGTTCTCTAGATTCCTCCATGGCTAATGTACCTTGTGTTTTTGAAGCTTCTCTGACCCATCAAAATAATCACCATCCCAGCAATTCTATCCATCAAGTTCCTCATATTTCAGCCCCAGATGATCATATCTCCACTGATGCTGCTGTGATTGAAGAGAAGACTCATAATATAGGGTCCATTTTCTCAGCATGCACTGACATTTTATTGGAAGATCAGATCACTGCCTTTTCTAGTGAAGATAATTGTAAAAAGTTTGAAGATCATCATATTATTGATGATACCCACCAAGGGGATAAAGCTATAAGCACTCCCACAAAGACAAAGGTATTGCACCACAAAAGGAAATCGGCCAATGTTCCTGCTGATGAGAAAGTGAACAATAGTATTTCTTGCTCATCTTCTGATAACCCCAATAAGAGAATTCGTGCTTCAAAGAATAAAAATAGAAAGCCTAAGCAGTCAAGTAAGAGCTTGCAGGTGAAGTTGAGTACTACTGATCCAAGGGGCAAATGTGAAGAGAATGAAAATGCAGGATCTGATTTACAATATAGTTGCAGTAGCTACAACTTGGAGGATGATAATAGTTCACAAGAAACTAATGGAGGGGCAAATTTAGATACCGAGACATCGCTGGATCTTAACTCGAACAGCAAGATGAGAGCCAGTAGAGGTTCCGCAACTGATCCCCAGAGCCTTTATGCAAGGAAAAGACGAGAGAGGATTAACGAGCGGCTGAAAGTTCTACAGAAACTCGTCCCTAATGGAACAAAGGTTGATATTAGCACAATGCTTGAGGAAGCAGTCCAATACGTGAAATTTCTGCAGCTCCAAATAAAGCTTTTGAGCTCTGATGACTTGTGGATGTACGCTCCAATCGCTTACAATGGAATGGACATTGGTCTTCACCAAAAGCTTTCTCCATTTTTATGA 1107 39.93 MDSFGSANYSEGEWNFCSSILSLEELDFTPYFLDQLQGLSSSIPQADIGFAGISDTNWFCSLDSSMANVPCVFEASLTHQNNHHPSNSIHQVPHISAPDDHISTDAAVIEEKTHNIGSIFSACTDILLEDQITAFSSEDNCKKFEDHHIIDDTHQGDKAISTPTKTKVLHHKRKSANVPADEKVNNSISCSSSDNPNKRIRASKNKNRKPKQSSKSLQVKLSTTDPRGKCEENENAGSDLQYSCSSYNLEDDNSSQETNGGANLDTETSLDLNSNSKMRASRGSATDPQSLYARKRRERINERLKVLQKLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLHQKLSPFL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3308380 3309957 - evm.model.ptg000002l.1097 HCH12g0562 555409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0562 368 Gene3D - 283 341 IPR036638 GO:0046983(InterPro)
HCH12g0562 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983(InterPro)
HCH12g0562 368 Pfam Helix-loop-helix DNA-binding domain 294 334 IPR011598 GO:0046983(InterPro)
HCH12g0562 368 CDD bHLH_AtIND_like 285 347 - -
HCH12g0562 368 MobiDBLite consensus disorder prediction 155 291 - -
HCH12g0562 368 MobiDBLite consensus disorder prediction 236 288 - -
HCH12g0562 368 FunFam Basic helix-loop-helix transcription factor 285 342 - -
HCH12g0562 368 MobiDBLite consensus disorder prediction 180 198 - -
HCH12g0562 368 SMART finulus 290 339 IPR011598 GO:0046983(InterPro)
HCH12g0562 368 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 92 356 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH12g0562 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 349 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1000 HCH-Chr10:25370995 HCH12g0562 HCH-Chr12:3308380 7.50E-13 dispersed
HCH12g0562 HCH-Chr12:3308380 HCH4g1831 HCH-Chr4:47210590 3.40E-44 dispersed
HCH12g0562 HCH-Chr12:3308380 HCH4g0590 HCH-Chr4:3896005 2.90E-48 wgd
HCH12g0562 HCH-Chr12:3308380 HCH7g0731 HCH-Chr7:9295925 1.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32681 PF00010 HLH 4.80E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0562 - - - 0.0