Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0563 | ATGGCTTTAGAAGCTCTAAATTCTCCAACAACACCATCACCAGCGTTCCATTTCGAAGACCCAAATCCAAACTCATTGGAATCATGGTCCAAGCGCAAGAGAACCAAGCGTCCACGCGGCTTCGAAAACCCTCCCACCGAAGAAGAATATCTTGCTCTATGCCTCATCATGCTCGCTCGTGGCGGCGCCGATGCTAACCTTCATGAAATCCCAATCCCCGCTCAGCCCATATCGGTTGTTAAACTCACTTACAACTGCTCCGTTTGTAACAAAGCCTTTTCTTCTTACCAAGCTTTAGGCGGTCATAAAGCAAGTCACAGGAAATTATTAGCCGCCGCTGCCGGTGAAGACCAATCCACTTCTTCCACCACAACTACCTCTGCCACCGCCACCACCTCCACGGCAGGCGGTAAGGCCCATGAGTGTTCTATTTGTCACAAGTCGTTCCCGACGGGACAGGCGTTAGGCGGTCACAAACGTTGTCACTACGACGGTGGAATCGGCAACAAAAACACCAACAACAACGTTAATAACAACAACGTTACAACCTCGTCCGAAGGAGTGGGATCCACGCATACCCTAAGTCATAGCCACCGTGACTTTGACCTTAATCTCCCCGCCTTGCCGGAGCTTTCACCGGCGTTCTTTGTCTCCGCCGATGATGAGGTTCAAAGCCCAATACCTCTGAAAAAGCCTCGTGTCCTGATGTTACCCAAAACTGAAATTTCTCAAGATCTCTGA | 741 | 50.07 | MALEALNSPTTPSPAFHFEDPNPNSLESWSKRKRTKRPRGFENPPTEEEYLALCLIMLARGGADANLHEIPIPAQPISVVKLTYNCSVCNKAFSSYQALGGHKASHRKLLAAAAGEDQSTSSTTTTSATATTSTAGGKAHECSICHKSFPTGQALGGHKRCHYDGGIGNKNTNNNVNNNNVTTSSEGVGSTHTLSHSHRDFDLNLPALPELSPAFFVSADDEVQSPIPLKKPRVLMLPKTEISQDL | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3317544 | 3318284 | + | evm.model.ptg000002l.1096 | HCH12g0563 | 555410 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0563 | 246 | Pfam | C2H2-type zinc finger | 139 | 164 | IPR013087 | - | |
HCH12g0563 | 246 | Pfam | C2H2-type zinc finger | 84 | 108 | IPR013087 | - | |
HCH12g0563 | 246 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 84 | 106 | IPR013087 | - | |
HCH12g0563 | 246 | Gene3D | Classic Zinc Finger | 82 | 162 | - | - | |
HCH12g0563 | 246 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
HCH12g0563 | 246 | MobiDBLite | consensus disorder prediction | 115 | 133 | - | - | |
HCH12g0563 | 246 | SUPERFAMILY | beta-beta-alpha zinc fingers | 84 | 162 | IPR036236 | - | |
HCH12g0563 | 246 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 140 | 162 | IPR013087 | - | |
HCH12g0563 | 246 | MobiDBLite | consensus disorder prediction | 114 | 133 | - | - | |
HCH12g0563 | 246 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
HCH12g0563 | 246 | SMART | c2h2final6 | 84 | 106 | IPR013087 | - | |
HCH12g0563 | 246 | SMART | c2h2final6 | 140 | 162 | IPR013087 | - | |
HCH12g0563 | 246 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 86 | 106 | IPR013087 | - | |
HCH12g0563 | 246 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 142 | 162 | IPR013087 | - | |
HCH12g0563 | 246 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 8 | 210 | IPR044653 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0563 | HCH-Chr12:3317544 | HCH13g0364 | HCH-Chr13:2424809 | 2.00E-16 | dispersed | |
HCH12g0563 | HCH-Chr12:3317544 | HCH4g0592 | HCH-Chr4:3915887 | 3.50E-29 | wgd | |
HCH12g0563 | HCH-Chr12:3317544 | HCH7g0728 | HCH-Chr7:9128355 | 2.60E-53 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32682 | PF13912 | zf-C2H2_6 | 5.10E-13 | CL0361 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0563 | - | - | - | 0.0 |