Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0563 ATGGCTTTAGAAGCTCTAAATTCTCCAACAACACCATCACCAGCGTTCCATTTCGAAGACCCAAATCCAAACTCATTGGAATCATGGTCCAAGCGCAAGAGAACCAAGCGTCCACGCGGCTTCGAAAACCCTCCCACCGAAGAAGAATATCTTGCTCTATGCCTCATCATGCTCGCTCGTGGCGGCGCCGATGCTAACCTTCATGAAATCCCAATCCCCGCTCAGCCCATATCGGTTGTTAAACTCACTTACAACTGCTCCGTTTGTAACAAAGCCTTTTCTTCTTACCAAGCTTTAGGCGGTCATAAAGCAAGTCACAGGAAATTATTAGCCGCCGCTGCCGGTGAAGACCAATCCACTTCTTCCACCACAACTACCTCTGCCACCGCCACCACCTCCACGGCAGGCGGTAAGGCCCATGAGTGTTCTATTTGTCACAAGTCGTTCCCGACGGGACAGGCGTTAGGCGGTCACAAACGTTGTCACTACGACGGTGGAATCGGCAACAAAAACACCAACAACAACGTTAATAACAACAACGTTACAACCTCGTCCGAAGGAGTGGGATCCACGCATACCCTAAGTCATAGCCACCGTGACTTTGACCTTAATCTCCCCGCCTTGCCGGAGCTTTCACCGGCGTTCTTTGTCTCCGCCGATGATGAGGTTCAAAGCCCAATACCTCTGAAAAAGCCTCGTGTCCTGATGTTACCCAAAACTGAAATTTCTCAAGATCTCTGA 741 50.07 MALEALNSPTTPSPAFHFEDPNPNSLESWSKRKRTKRPRGFENPPTEEEYLALCLIMLARGGADANLHEIPIPAQPISVVKLTYNCSVCNKAFSSYQALGGHKASHRKLLAAAAGEDQSTSSTTTTSATATTSTAGGKAHECSICHKSFPTGQALGGHKRCHYDGGIGNKNTNNNVNNNNVTTSSEGVGSTHTLSHSHRDFDLNLPALPELSPAFFVSADDEVQSPIPLKKPRVLMLPKTEISQDL 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3317544 3318284 + evm.model.ptg000002l.1096 HCH12g0563 555410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0563 246 Pfam C2H2-type zinc finger 139 164 IPR013087 -
HCH12g0563 246 Pfam C2H2-type zinc finger 84 108 IPR013087 -
HCH12g0563 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
HCH12g0563 246 Gene3D Classic Zinc Finger 82 162 - -
HCH12g0563 246 MobiDBLite consensus disorder prediction 1 18 - -
HCH12g0563 246 MobiDBLite consensus disorder prediction 115 133 - -
HCH12g0563 246 SUPERFAMILY beta-beta-alpha zinc fingers 84 162 IPR036236 -
HCH12g0563 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 162 IPR013087 -
HCH12g0563 246 MobiDBLite consensus disorder prediction 114 133 - -
HCH12g0563 246 MobiDBLite consensus disorder prediction 1 44 - -
HCH12g0563 246 SMART c2h2final6 84 106 IPR013087 -
HCH12g0563 246 SMART c2h2final6 140 162 IPR013087 -
HCH12g0563 246 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
HCH12g0563 246 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
HCH12g0563 246 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 8 210 IPR044653 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0563 HCH-Chr12:3317544 HCH13g0364 HCH-Chr13:2424809 2.00E-16 dispersed
HCH12g0563 HCH-Chr12:3317544 HCH4g0592 HCH-Chr4:3915887 3.50E-29 wgd
HCH12g0563 HCH-Chr12:3317544 HCH7g0728 HCH-Chr7:9128355 2.60E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32682 PF13912 zf-C2H2_6 5.10E-13 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0563 - - - 0.0