Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0564 ATGAGCTGCAACGGTTGTAGAGTGCTACGAAAAGGGTGCAGCGAAGGTTGTGTTCTGCGTTCATGTCTACAATGGATTGATTCCCCAGAATCCCAAGGCAACGCCACTCTGTTCCTCGCCAAGTTTTTCGGCCGTAGCGATCTCTTATCCTTTATCTCCGCCGTCCCCGATCATCAAAGACCCGCTCTCTTCCAATCTCTGTTATTTGAAGCGTGTGGCCGTACAATAAACCCGGTCGGCGGTGCTGTCGGACTTTTATCAAGTGGGAATTGGCACGTGTGTCAAGCGGCAGCCGAGACAGTCATCAGCGGCGGCGTTCTCCGACCAATACCCGGAATCGATATTACCGGAAATCAGACGGCAGGCAGCAACGTGGATGAATCCTCTGCCGTCACAGACGGATGGATGACACAGAATTTCCAGTACACATCTTTGCCGTCCGTTTACGAAGCGAGAGAATATAAACTATCCGATCTTGGTCTCTGTGTTTCACCAAATTCCAATACCAAAATCGTCGCCGGAAGAGGAATAGAGAAACGGCGGTCTTTGGATTCGGAGGAGTCGTTGATGACTAGTTTCGGAAGTGGCGGGGGCGGCGGCGGCGACCGACGAAAAGAGAGAAAGCTTTTAAATTTATTTATATGA 645 50.54 MSCNGCRVLRKGCSEGCVLRSCLQWIDSPESQGNATLFLAKFFGRSDLLSFISAVPDHQRPALFQSLLFEACGRTINPVGGAVGLLSSGNWHVCQAAAETVISGGVLRPIPGIDITGNQTAGSNVDESSAVTDGWMTQNFQYTSLPSVYEAREYKLSDLGLCVSPNSNTKIVAGRGIEKRRSLDSEESLMTSFGSGGGGGGDRRKERKLLNLFI 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3326954 3327852 + evm.model.ptg000002l.1095 HCH12g0564 555411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0564 214 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
HCH12g0564 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 127 - GO:0010468(PANTHER)
HCH12g0564 214 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0564 HCH-Chr12:3326954 HCH9g0366 HCH-Chr9:2278680 2.90E-40 dispersed
HCH12g0564 HCH-Chr12:3326954 HCH14g0354 HCH-Chr14:32507561 7.40E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32683 PF03195 LOB 1.20E-24 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0564 - - - 0.0