Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0581 ATGGCGGAGAAAGAGAATATTCTCCGCGTCACGCGCAGTTCTAAGCGGAAAGCGACGGAAACTTCCACCCCCACTCCCACTCCCGACGACCGCCCCAAAAAGAGAGTGGTTCTCGGAGAACTCCCAAATCTACAAAATCCTGACGCCGTGATTGACCCCAACTTGAAACCGAAACCCAACAAGCCAAAACGGAAAGTTAAATCGAAAAACAGCGCCGGGACCAGTTCCAGTTCCCACGCTGATATTGTCGTGAAGCCAACAATTGACGAGGTTTTTAACGATCCCCAATTGTGTGTCGCTTACGCTTTTGATATTTATGAATATCTTCGCAATATGGAGGCTGATCCAAGAAAAAGAGCGTTACCAGATTATATGGCGAGAGTCCAAAGTGATATAAGTGCAAATATGAGAGGAATTCTAGTGGATTGGTTGGTTGAAGTAGCAGAGGAATATAGGCTTGTTTCAGACACTCTTTACCTTTCCATTTCATATATTGACAGATTCTTATCTGTTAATGATATCAGTAGACATAAACTTCAATTGCTTGGTGTTTCTTCCATGCTCATTGCCTCAAAGTATGAAGAAATTAGTCCTCCTCATGTTGAAGAATTTGTATACATCACTGATAATACCTACAATAGAGAGGAGGTTGTTAAGATGGAGGCTGATATATTGAAGTCATTGGATTTCGAACTTGGTAATCCTACAACAAAGACATTTTTAAGGCAATTGCTAATTGCTCATTGCTCTTTGCAGAATACTACTTTGCAGTTTGAATTTTTGGGGTACTATCTTGCTGAATTGAGTCTATTAGACTACAACTGTGTCAAATTCTTGCCGTCTCTCGTTGCTGCATCTGTTATTTTTCTGGCACGGTTTATGATCCATCCAAAGATGCATCCTTGGAGTTTAAGGATGCACCAATGCATTGGATATAAGCCACCTGATTTGAAGGATTGTGTTCTTTTGATACATGATTTATACCTCAGTAGAAGAGGAGGGACTTTATTATCTATAAGAGATAAATACAAACAACATAAGTTCAAGTGTGTGGCTATCATGTCTTCACCTCCAGAGATTCCCGTTTCATATTTTGAAGATGTTAGAGTATGA 1113 40.25 MAEKENILRVTRSSKRKATETSTPTPTPDDRPKKRVVLGELPNLQNPDAVIDPNLKPKPNKPKRKVKSKNSAGTSSSSHADIVVKPTIDEVFNDPQLCVAYAFDIYEYLRNMEADPRKRALPDYMARVQSDISANMRGILVDWLVEVAEEYRLVSDTLYLSISYIDRFLSVNDISRHKLQLLGVSSMLIASKYEEISPPHVEEFVYITDNTYNREEVVKMEADILKSLDFELGNPTTKTFLRQLLIAHCSLQNTTLQFEFLGYYLAELSLLDYNCVKFLPSLVAASVIFLARFMIHPKMHPWSLRMHQCIGYKPPDLKDCVLLIHDLYLSRRGGTLLSIRDKYKQHKFKCVAIMSSPPEIPVSYFEDVRV 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3405954 3407721 + evm.model.ptg000002l.1078 HCH12g0581 555428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0581 370 MobiDBLite consensus disorder prediction 1 16 - -
HCH12g0581 370 SMART Cyclin_C_2 235 357 IPR004367 -
HCH12g0581 370 Gene3D - 104 352 - -
HCH12g0581 370 FunFam Cyclin A1 222 353 - -
HCH12g0581 370 Pfam Cyclin, N-terminal domain 104 232 IPR006671 -
HCH12g0581 370 SMART cyclin_7 239 326 IPR013763 -
HCH12g0581 370 SMART cyclin_7 142 226 IPR013763 -
HCH12g0581 370 MobiDBLite consensus disorder prediction 1 79 - -
HCH12g0581 370 Pfam Cyclin, C-terminal domain 235 356 IPR004367 -
HCH12g0581 370 Gene3D - 120 233 - -
HCH12g0581 370 ProSitePatterns Cyclins signature. 137 168 IPR048258 -
HCH12g0581 370 SUPERFAMILY Cyclin-like 93 232 IPR036915 -
HCH12g0581 370 SUPERFAMILY Cyclin-like 235 359 IPR036915 -
HCH12g0581 370 FunFam Mitotic cyclin 6 120 220 - -
HCH12g0581 370 CDD CYCLIN_AtCycA-like_rpt2 235 348 - -
HCH12g0581 370 PIRSF Cyclin_A_B_D_E 2 364 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
HCH12g0581 370 PANTHER CYCLINS 79 345 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0581 HCH-Chr12:3405954 HCH13g0150 HCH-Chr13:958674 6.30E-75 dispersed
HCH12g0581 HCH-Chr12:3405954 HCH4g0610 HCH-Chr4:4008048 1.50E-124 wgd
HCH12g0581 HCH-Chr12:3405954 HCH7g0708 HCH-Chr7:8615998 8.20E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0581 K06627 - csv:101207493 494.197