Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0581 | ATGGCGGAGAAAGAGAATATTCTCCGCGTCACGCGCAGTTCTAAGCGGAAAGCGACGGAAACTTCCACCCCCACTCCCACTCCCGACGACCGCCCCAAAAAGAGAGTGGTTCTCGGAGAACTCCCAAATCTACAAAATCCTGACGCCGTGATTGACCCCAACTTGAAACCGAAACCCAACAAGCCAAAACGGAAAGTTAAATCGAAAAACAGCGCCGGGACCAGTTCCAGTTCCCACGCTGATATTGTCGTGAAGCCAACAATTGACGAGGTTTTTAACGATCCCCAATTGTGTGTCGCTTACGCTTTTGATATTTATGAATATCTTCGCAATATGGAGGCTGATCCAAGAAAAAGAGCGTTACCAGATTATATGGCGAGAGTCCAAAGTGATATAAGTGCAAATATGAGAGGAATTCTAGTGGATTGGTTGGTTGAAGTAGCAGAGGAATATAGGCTTGTTTCAGACACTCTTTACCTTTCCATTTCATATATTGACAGATTCTTATCTGTTAATGATATCAGTAGACATAAACTTCAATTGCTTGGTGTTTCTTCCATGCTCATTGCCTCAAAGTATGAAGAAATTAGTCCTCCTCATGTTGAAGAATTTGTATACATCACTGATAATACCTACAATAGAGAGGAGGTTGTTAAGATGGAGGCTGATATATTGAAGTCATTGGATTTCGAACTTGGTAATCCTACAACAAAGACATTTTTAAGGCAATTGCTAATTGCTCATTGCTCTTTGCAGAATACTACTTTGCAGTTTGAATTTTTGGGGTACTATCTTGCTGAATTGAGTCTATTAGACTACAACTGTGTCAAATTCTTGCCGTCTCTCGTTGCTGCATCTGTTATTTTTCTGGCACGGTTTATGATCCATCCAAAGATGCATCCTTGGAGTTTAAGGATGCACCAATGCATTGGATATAAGCCACCTGATTTGAAGGATTGTGTTCTTTTGATACATGATTTATACCTCAGTAGAAGAGGAGGGACTTTATTATCTATAAGAGATAAATACAAACAACATAAGTTCAAGTGTGTGGCTATCATGTCTTCACCTCCAGAGATTCCCGTTTCATATTTTGAAGATGTTAGAGTATGA | 1113 | 40.25 | MAEKENILRVTRSSKRKATETSTPTPTPDDRPKKRVVLGELPNLQNPDAVIDPNLKPKPNKPKRKVKSKNSAGTSSSSHADIVVKPTIDEVFNDPQLCVAYAFDIYEYLRNMEADPRKRALPDYMARVQSDISANMRGILVDWLVEVAEEYRLVSDTLYLSISYIDRFLSVNDISRHKLQLLGVSSMLIASKYEEISPPHVEEFVYITDNTYNREEVVKMEADILKSLDFELGNPTTKTFLRQLLIAHCSLQNTTLQFEFLGYYLAELSLLDYNCVKFLPSLVAASVIFLARFMIHPKMHPWSLRMHQCIGYKPPDLKDCVLLIHDLYLSRRGGTLLSIRDKYKQHKFKCVAIMSSPPEIPVSYFEDVRV | 370 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3405954 | 3407721 | + | evm.model.ptg000002l.1078 | HCH12g0581 | 555428 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0581 | 370 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
HCH12g0581 | 370 | SMART | Cyclin_C_2 | 235 | 357 | IPR004367 | - | |
HCH12g0581 | 370 | Gene3D | - | 104 | 352 | - | - | |
HCH12g0581 | 370 | FunFam | Cyclin A1 | 222 | 353 | - | - | |
HCH12g0581 | 370 | Pfam | Cyclin, N-terminal domain | 104 | 232 | IPR006671 | - | |
HCH12g0581 | 370 | SMART | cyclin_7 | 239 | 326 | IPR013763 | - | |
HCH12g0581 | 370 | SMART | cyclin_7 | 142 | 226 | IPR013763 | - | |
HCH12g0581 | 370 | MobiDBLite | consensus disorder prediction | 1 | 79 | - | - | |
HCH12g0581 | 370 | Pfam | Cyclin, C-terminal domain | 235 | 356 | IPR004367 | - | |
HCH12g0581 | 370 | Gene3D | - | 120 | 233 | - | - | |
HCH12g0581 | 370 | ProSitePatterns | Cyclins signature. | 137 | 168 | IPR048258 | - | |
HCH12g0581 | 370 | SUPERFAMILY | Cyclin-like | 93 | 232 | IPR036915 | - | |
HCH12g0581 | 370 | SUPERFAMILY | Cyclin-like | 235 | 359 | IPR036915 | - | |
HCH12g0581 | 370 | FunFam | Mitotic cyclin 6 | 120 | 220 | - | - | |
HCH12g0581 | 370 | CDD | CYCLIN_AtCycA-like_rpt2 | 235 | 348 | - | - | |
HCH12g0581 | 370 | PIRSF | Cyclin_A_B_D_E | 2 | 364 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
HCH12g0581 | 370 | PANTHER | CYCLINS | 79 | 345 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0581 | HCH-Chr12:3405954 | HCH13g0150 | HCH-Chr13:958674 | 6.30E-75 | dispersed | |
HCH12g0581 | HCH-Chr12:3405954 | HCH4g0610 | HCH-Chr4:4008048 | 1.50E-124 | wgd | |
HCH12g0581 | HCH-Chr12:3405954 | HCH7g0708 | HCH-Chr7:8615998 | 8.20E-83 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0581 | K06627 | - | csv:101207493 | 494.197 |