Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH12g0588 | ATGTTCTTTGCCCCCTACAGCGATCATTGGCGCACTTTACGCCGTTTGGCTATGACGGAATTGCTCTCCACTCATCGTCTAAATATGTTTGTAAGCATTCGAGAGGAAGAATTCAAATTATGGCTCAAATATTTGTTTGAGATTACAAGGAAAGATTTTGTTCAAGTGGAGATGAAATCTAAATTCAACGAGTTGTCTTTTAATATTGTCATGAGGATGATAAGTGGGAAACGCTACTTTGGACGTCAAGTGGAAGATTTTGAGGAGGCAAGGGAGTTTGAAGAGATTGTTAAGGAACTTTTTCTATTGACTGGAGCATCAAATCTCGGAGACTATTTGCCAATTTTGAGACTTTTTGATTTCCATGGAATTGAAAAGAGGATGTTGAAAGTGCGGGATCGTGCAAATGCATTCTTACAAAACGTAGTTGATAGACATCGAGAAAAGAAAGCTGCAAGACCTCAAGAAGAAGATGGAAAGACCATGATCGATAATCTACTGTCATTACAAGAATCAAATCCTGCTTTTTACACTGATGATATTATCAAAGGTCATGTTTTGACCATGCTAGGTGGTGGGACTGATACGGTAACGGGGACAATTGAGTGGGCTATGTCGCTTCTCCTTAACCATCCTTCAGTGATGGAAAAGGCTTTGAATGAAATAAACGAGTGCGTCGGGCACCAACGGCTGGTAGATGAAGGAGATCTTAGTAAGTTAAACTATCTTCAAGCCATGATCAACGAGACCCTTCGATTGTTTCCAATAGCTCCATTGTTGGTGCCTCATGAATCATATGAAGATTGTACAATCGATGAATATTACGTACCGAAAGGAACGATGTTGCTAGTTAATGTATGGGCCATTCACAGAGACCCCAAAGTGTGGAATGATCCAACAAGTTTTAAACCAGAGAGATTTGGAGAATTGGAAGAAGTTGAAGCAACGAAGCTGATACCATTTGGGATGGGGAGGAGGTCATGTCCAGGGGTTGGTCTTGCACAGAGGGTCGTGGGATTGACTTTAGCAGCTCTTCTTCAGTGCTTCGAGTGGGAGAGAATTGGCGAAGAGGAAATAGACTTGTCTGAAGGAACTGGAATCACTGTGCCTAAAGCCAAGTCGTCAGAGGCAATGTGCAAAGTTCGTAGTTCAATGGTTGATGTTCTGTCTGGATTTTGA | 1179 | 41.65 | MFFAPYSDHWRTLRRLAMTELLSTHRLNMFVSIREEEFKLWLKYLFEITRKDFVQVEMKSKFNELSFNIVMRMISGKRYFGRQVEDFEEAREFEEIVKELFLLTGASNLGDYLPILRLFDFHGIEKRMLKVRDRANAFLQNVVDRHREKKAARPQEEDGKTMIDNLLSLQESNPAFYTDDIIKGHVLTMLGGGTDTVTGTIEWAMSLLLNHPSVMEKALNEINECVGHQRLVDEGDLSKLNYLQAMINETLRLFPIAPLLVPHESYEDCTIDEYYVPKGTMLLVNVWAIHRDPKVWNDPTSFKPERFGELEEVEATKLIPFGMGRRSCPGVGLAQRVVGLTLAALLQCFEWERIGEEEIDLSEGTGITVPKAKSSEAMCKVRSSMVDVLSGF | 392 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 3455925 | 3457185 | + | evm.model.ptg000002l.1071 | HCH12g0588 | 555435 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH12g0588 | 392 | Gene3D | Cytochrome P450 | 1 | 388 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | E-class P450 group I signature | 181 | 198 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | E-class P450 group I signature | 318 | 328 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | E-class P450 group I signature | 285 | 309 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | E-class P450 group I signature | 244 | 262 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | E-class P450 group I signature | 201 | 227 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | E-class P450 group I signature | 65 | 83 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | E-class P450 group I signature | 328 | 351 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | FunFam | Cytochrome P450 82C4 | 1 | 380 | - | - | |
| HCH12g0588 | 392 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 321 | 330 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH12g0588 | 392 | Pfam | Cytochrome P450 | 2 | 371 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | P450 superfamily signature | 328 | 339 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | P450 superfamily signature | 319 | 328 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | P450 superfamily signature | 245 | 256 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PRINTS | P450 superfamily signature | 192 | 209 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH12g0588 | 392 | PANTHER | CYTOCHROME P450 82C3-RELATED | 2 | 383 | IPR050651 | - | |
| HCH12g0588 | 392 | SUPERFAMILY | Cytochrome P450 | 1 | 380 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH12g0586 | HCH-Chr12:3432300 | HCH12g0588 | HCH-Chr12:3455925 | 2.20E-105 | dispersed | |
| HCH12g0588 | HCH-Chr12:3455925 | HCH14g0325 | HCH-Chr14:31972808 | 2.10E-116 | dispersed | |
| HCH12g0587 | HCH-Chr12:3438646 | HCH12g0588 | HCH-Chr12:3455925 | 4.50E-156 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH12g0588 | K13260 | - | csv:101207002 | 505.368 |