Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0588 ATGTTCTTTGCCCCCTACAGCGATCATTGGCGCACTTTACGCCGTTTGGCTATGACGGAATTGCTCTCCACTCATCGTCTAAATATGTTTGTAAGCATTCGAGAGGAAGAATTCAAATTATGGCTCAAATATTTGTTTGAGATTACAAGGAAAGATTTTGTTCAAGTGGAGATGAAATCTAAATTCAACGAGTTGTCTTTTAATATTGTCATGAGGATGATAAGTGGGAAACGCTACTTTGGACGTCAAGTGGAAGATTTTGAGGAGGCAAGGGAGTTTGAAGAGATTGTTAAGGAACTTTTTCTATTGACTGGAGCATCAAATCTCGGAGACTATTTGCCAATTTTGAGACTTTTTGATTTCCATGGAATTGAAAAGAGGATGTTGAAAGTGCGGGATCGTGCAAATGCATTCTTACAAAACGTAGTTGATAGACATCGAGAAAAGAAAGCTGCAAGACCTCAAGAAGAAGATGGAAAGACCATGATCGATAATCTACTGTCATTACAAGAATCAAATCCTGCTTTTTACACTGATGATATTATCAAAGGTCATGTTTTGACCATGCTAGGTGGTGGGACTGATACGGTAACGGGGACAATTGAGTGGGCTATGTCGCTTCTCCTTAACCATCCTTCAGTGATGGAAAAGGCTTTGAATGAAATAAACGAGTGCGTCGGGCACCAACGGCTGGTAGATGAAGGAGATCTTAGTAAGTTAAACTATCTTCAAGCCATGATCAACGAGACCCTTCGATTGTTTCCAATAGCTCCATTGTTGGTGCCTCATGAATCATATGAAGATTGTACAATCGATGAATATTACGTACCGAAAGGAACGATGTTGCTAGTTAATGTATGGGCCATTCACAGAGACCCCAAAGTGTGGAATGATCCAACAAGTTTTAAACCAGAGAGATTTGGAGAATTGGAAGAAGTTGAAGCAACGAAGCTGATACCATTTGGGATGGGGAGGAGGTCATGTCCAGGGGTTGGTCTTGCACAGAGGGTCGTGGGATTGACTTTAGCAGCTCTTCTTCAGTGCTTCGAGTGGGAGAGAATTGGCGAAGAGGAAATAGACTTGTCTGAAGGAACTGGAATCACTGTGCCTAAAGCCAAGTCGTCAGAGGCAATGTGCAAAGTTCGTAGTTCAATGGTTGATGTTCTGTCTGGATTTTGA 1179 41.65 MFFAPYSDHWRTLRRLAMTELLSTHRLNMFVSIREEEFKLWLKYLFEITRKDFVQVEMKSKFNELSFNIVMRMISGKRYFGRQVEDFEEAREFEEIVKELFLLTGASNLGDYLPILRLFDFHGIEKRMLKVRDRANAFLQNVVDRHREKKAARPQEEDGKTMIDNLLSLQESNPAFYTDDIIKGHVLTMLGGGTDTVTGTIEWAMSLLLNHPSVMEKALNEINECVGHQRLVDEGDLSKLNYLQAMINETLRLFPIAPLLVPHESYEDCTIDEYYVPKGTMLLVNVWAIHRDPKVWNDPTSFKPERFGELEEVEATKLIPFGMGRRSCPGVGLAQRVVGLTLAALLQCFEWERIGEEEIDLSEGTGITVPKAKSSEAMCKVRSSMVDVLSGF 392
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 3455925 3457185 + evm.model.ptg000002l.1071 HCH12g0588 555435
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0588 392 Gene3D Cytochrome P450 1 388 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS E-class P450 group I signature 181 198 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS E-class P450 group I signature 318 328 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS E-class P450 group I signature 285 309 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS E-class P450 group I signature 244 262 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS E-class P450 group I signature 201 227 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS E-class P450 group I signature 65 83 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS E-class P450 group I signature 328 351 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 FunFam Cytochrome P450 82C4 1 380 - -
HCH12g0588 392 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 321 330 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH12g0588 392 Pfam Cytochrome P450 2 371 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS P450 superfamily signature 328 339 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS P450 superfamily signature 319 328 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS P450 superfamily signature 245 256 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PRINTS P450 superfamily signature 192 209 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH12g0588 392 PANTHER CYTOCHROME P450 82C3-RELATED 2 383 IPR050651 -
HCH12g0588 392 SUPERFAMILY Cytochrome P450 1 380 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0586 HCH-Chr12:3432300 HCH12g0588 HCH-Chr12:3455925 2.20E-105 dispersed
HCH12g0588 HCH-Chr12:3455925 HCH14g0325 HCH-Chr14:31972808 2.10E-116 dispersed
HCH12g0587 HCH-Chr12:3438646 HCH12g0588 HCH-Chr12:3455925 4.50E-156 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0588 K13260 - csv:101207002 505.368