Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0596 ATGCAAAACCACTCTTCCAATAACATGTCTAAATCTCACTGTTTATCAAATTCTACATTTCTTCTCGATGATTCCTTGTTCTGCTTCGAAGAGCATTGGGAGGAGGAGGAAGAAGAAGAAGAGGAGGAGGACTTCCATTACCGACAAAAGAATATTAATATCAATTCTCCAAACTCTGTAATTTTGTCGGGGCAGGACTTTTTTTGGGAAGATGAAGAACTGGTGTCTTTGTTTTCAAAGGAACACAAAAACAAGCTTCATAATTCTCTCCAAAATAACCCAACTCTAGAAACAGCTCGTAGGAGAGGTGTAGAATTGATACTGAAAGCAAATGCCCACTATTCTTTCAATGCACTTACTGCTGTTTTAGCCGTTGATTATGTCGATAGGTTTCTTTCAAGTATCCATTTTCAGATAGAAAAACCATGGATGACACATCTCACTGCTGTTGCTTGTATTTCCATTGCTGCCAAAGTGGAAGAAACTCAAGTCCCACTTCTTTTAGACATCCAGGTGGAGGAAAATGAGTATTTCTTCGAAGCGAAAACGATTAAAAGAATGGAGATTCTTGTTCTCTCCACGCTTCAATGGAAAATGAATCCTGTAAATCCACTTTCATTTCTTGATTATATCATAAGACGGGTTGGTTTCAAAGACCATCTTTGTTCCGAATTTCTTGAAAGATGTGAAAGATTACTTCTCTCTGTTATTTCAGATTCAAGATTCGTGTGTTTTCTTCCATCAGTAATAGCGAGCGCTATAATGCTTCAAGTTATAAATGACATAGAGCCCTGTGTCTTGGCCAAATACCAAGACCAGCTTCTTGGTTTTCTCCGAACCGACAAGGATAAAGTAAACGACTGCAGTAGATTTATTGAGGAAGAAAGAAAGAAATGGAATGGATATAGAATGGGTTCAATTCCGGGCAGCCCGAAAGGGATAATGGAGTTATCGTGGGCTGGGGTATTATCGGAAGGATCGTCGCCGGAGCAAGTAAGTAAGAAGAGAAAGATGGAGATGGCAAAGTTGACGACAGAGGAAGAATTTCAGGGGAGTCGTTGA 1062 39.55 MQNHSSNNMSKSHCLSNSTFLLDDSLFCFEEHWEEEEEEEEEEDFHYRQKNININSPNSVILSGQDFFWEDEELVSLFSKEHKNKLHNSLQNNPTLETARRRGVELILKANAHYSFNALTAVLAVDYVDRFLSSIHFQIEKPWMTHLTAVACISIAAKVEETQVPLLLDIQVEENEYFFEAKTIKRMEILVLSTLQWKMNPVNPLSFLDYIIRRVGFKDHLCSEFLERCERLLLSVISDSRFVCFLPSVIASAIMLQVINDIEPCVLAKYQDQLLGFLRTDKDKVNDCSRFIEEERKKWNGYRMGSIPGSPKGIMELSWAGVLSEGSSPEQVSKKRKMEMAKLTTEEEFQGSR 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3496908 3498244 - evm.model.ptg000002l.1063 HCH12g0596 555443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0596 353 CDD CYCLIN_AtCycD-like_rpt1 99 197 - -
HCH12g0596 353 Gene3D - 88 200 - -
HCH12g0596 353 Pfam Cyclin, N-terminal domain 80 200 IPR006671 -
HCH12g0596 353 FunFam CYCLIN D32 201 290 - -
HCH12g0596 353 SMART Cyclin_C_2 202 346 IPR004367 -
HCH12g0596 353 MobiDBLite consensus disorder prediction 328 353 - -
HCH12g0596 353 CDD CYCLIN_AtCycD-like_rpt2 202 288 - -
HCH12g0596 353 FunFam D6-type cyclin 83 200 - -
HCH12g0596 353 SUPERFAMILY Cyclin-like 68 200 IPR036915 -
HCH12g0596 353 MobiDBLite consensus disorder prediction 330 353 - -
HCH12g0596 353 PANTHER CYCLINS 50 258 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH12g0596 353 Gene3D - 201 289 - -
HCH12g0596 353 SMART cyclin_7 105 193 IPR013763 -
HCH12g0596 353 Pfam Cyclin, C-terminal domain 202 294 IPR004367 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0596 K14505 - - csv:101218302 389.423
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0596 HCH-Chr12:3496908 HCH4g1861 HCH-Chr4:48653593 7.40E-73 dispersed
HCH12g0596 HCH-Chr12:3496908 HCH14g0311 HCH-Chr14:31788478 3.80E-61 wgd
HCH12g0596 HCH-Chr12:3496908 HCH4g0620 HCH-Chr4:4058121 7.30E-89 wgd
HCH12g0596 HCH-Chr12:3496908 HCH7g0676 HCH-Chr7:7566241 4.60E-67 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0733 . 1 291 Core Cell Cycle Gene Families AT3G48750 85.6 1.1e-149 526.2
HCH9g0868 . 1 300 Core Cell Cycle Gene Families AT3G48750 56.8 1.2e-95 346.7
HCH12g0031 . 14 310 Core Cell Cycle Gene Families AT3G48750 52.0 2.2e-91 332.4
HCH9g0868 . 1 305 Core Cell Cycle Gene Families AT3G54180 84.5 1.3e-153 539.3
HCH12g0031 . 14 313 Core Cell Cycle Gene Families AT3G54180 65.8 6.6e-118 420.6
HCH1g0733 . 1 290 Core Cell Cycle Gene Families AT3G54180 53.8 4.0e-91 331.6
HCH9g0868 . 1 305 Core Cell Cycle Gene Families AT2G38620 71.5 7.2e-123 436.8
HCH12g0031 . 14 313 Core Cell Cycle Gene Families AT2G38620 57.3 8.6e-92 333.6
HCH12g0031 . 11 310 Core Cell Cycle Gene Families AT1G76540 84.3 9.2e-152 533.1
HCH9g0868 . 1 300 Core Cell Cycle Gene Families AT1G76540 66.0 1.3e-116 416.4
HCH1g0733 . 1 290 Core Cell Cycle Gene Families AT1G76540 52.7 8.2e-92 334.0
HCH12g0031 . 1 310 Core Cell Cycle Gene Families AT1G20930 84.2 5.3e-155 543.9
HCH9g0868 . 1 305 Core Cell Cycle Gene Families AT1G20930 66.3 3.6e-119 424.9
HCH1g0733 . 1 290 Core Cell Cycle Gene Families AT1G20930 54.7 8.0e-95 344.0
HCH3g0634 . 1 516 Core Cell Cycle Gene Families AT5G10270 72.2 7.8e-209 723.4
HCH2g1468 . 1 516 Core Cell Cycle Gene Families AT5G10270 72.5 4.3e-207 717.6
HCH6g0679 . 123 439 Core Cell Cycle Gene Families AT5G10270 55.0 4.3e-98 355.5
HCH7g1131 . 105 421 Core Cell Cycle Gene Families AT5G10270 53.5 7.3e-98 354.8
HCH12g1568 . 146 462 Core Cell Cycle Gene Families AT5G10270 51.8 2.8e-97 352.8
HCH8g0160 . 118 436 Core Cell Cycle Gene Families AT5G10270 51.0 3.0e-96 349.4
HCH1g0137 . 145 461 Core Cell Cycle Gene Families AT5G10270 51.8 2.6e-95 346.3
HCH10g0786 . 109 427 Core Cell Cycle Gene Families AT5G10270 50.7 1.3e-94 344.0
HCH2g0833 . 145 461 Core Cell Cycle Gene Families AT5G10270 52.3 1.7e-94 343.6
HCH3g0471 . 84 400 Core Cell Cycle Gene Families AT5G10270 52.3 2.9e-94 342.8
HCH3g0083 . 102 418 Core Cell Cycle Gene Families AT5G10270 51.4 1.6e-92 337.0
HCH2g1468 . 65 515 Core Cell Cycle Gene Families AT5G64960 71.0 6.3e-173 604.0
HCH3g0634 . 65 515 Core Cell Cycle Gene Families AT5G64960 70.7 6.3e-173 604.0
HCH6g0679 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.7 3.9e-82 302.4
HCH12g1568 . 200 462 Core Cell Cycle Gene Families AT5G64960 51.8 9.6e-81 297.7
HCH7g1131 . 159 421 Core Cell Cycle Gene Families AT5G64960 52.5 9.6e-81 297.7
HCH1g0137 . 199 461 Core Cell Cycle Gene Families AT5G64960 53.2 1.3e-80 297.4
HCH8g0160 . 172 436 Core Cell Cycle Gene Families AT5G64960 50.7 6.2e-80 295.0
HCH2g0833 . 199 461 Core Cell Cycle Gene Families AT5G64960 52.5 2.4e-79 293.1
HCH3g0471 . 138 400 Core Cell Cycle Gene Families AT5G64960 52.2 5.3e-79 292.0
HCH2g0832 . 185 450 Core Cell Cycle Gene Families AT5G64960 50.9 2.6e-78 289.7
HCH3g0083 . 156 420 Core Cell Cycle Gene Families AT5G64960 50.4 8.4e-77 284.6
HCH12g1497 . 154 403 Core Cell Cycle Gene Families AT5G64960 50.2 6.2e-72 268.5
HCH9g1407 . 15 425 Core Cell Cycle Gene Families AT1G73690 74.2 1.1e-173 606.3
HCH9g1407 . 23 359 Core Cell Cycle Gene Families AT1G66750 77.2 9.0e-156 546.6
HCH9g1407 . 19 426 Core Cell Cycle Gene Families AT1G18040 74.5 7.0e-173 603.6
HCH14g0040 . 1 475 Core Cell Cycle Gene Families AT5G63610 76.6 3.6e-208 721.1
HCH10g0472 . 1 482 Core Cell Cycle Gene Families AT4G28980 60.5 4.2e-172 601.3
HCH13g0150 . 5 486 Core Cell Cycle Gene Families AT1G44110 61.3 1.2e-155 546.6
HCH12g0338 . 205 472 Core Cell Cycle Gene Families AT1G44110 57.1 5.6e-89 325.1
HCH4g1352 . 197 475 Core Cell Cycle Gene Families AT1G44110 54.8 2.1e-88 323.2
HCH4g0400 . 175 441 Core Cell Cycle Gene Families AT1G44110 53.2 6.9e-79 291.6
HCH12g0581 . 88 367 Core Cell Cycle Gene Families AT1G44110 52.0 3.5e-75 279.3
HCH12g0338 . 205 483 Core Cell Cycle Gene Families AT1G77390 52.1 2.1e-80 296.6
HCH4g1352 . 196 471 Core Cell Cycle Gene Families AT1G77390 53.3 6.0e-80 295.0
HCH4g0400 . 175 437 Core Cell Cycle Gene Families AT1G77390 51.3 4.3e-70 262.3
HCH12g0338 . 16 483 Core Cell Cycle Gene Families AT5G25380 51.1 4.7e-109 391.7
HCH4g0400 . 9 455 Core Cell Cycle Gene Families AT5G25380 51.3 6.4e-106 381.3
HCH13g0150 . 205 476 Core Cell Cycle Gene Families AT5G25380 55.5 5.8e-83 305.1
HCH12g0581 . 88 360 Core Cell Cycle Gene Families AT5G25380 50.4 6.2e-69 258.5
HCH7g0708 . 100 325 Core Cell Cycle Gene Families AT5G25380 57.1 6.4e-66 248.4
HCH12g0338 . 10 421 Core Cell Cycle Gene Families AT5G11300 51.4 3.4e-93 339.0
HCH4g0400 . 64 391 Core Cell Cycle Gene Families AT5G11300 57.0 1.7e-89 326.6
HCH13g0150 . 205 424 Core Cell Cycle Gene Families AT5G11300 59.1 1.1e-70 264.2
HCH4g0610 . 84 299 Core Cell Cycle Gene Families AT5G11300 50.9 3.5e-58 222.6
HCH12g0581 . 88 302 Core Cell Cycle Gene Families AT5G11300 53.7 3.6e-55 212.6
HCH7g0708 . 75 274 Core Cell Cycle Gene Families AT5G11300 52.4 4.9e-52 202.2
HCH4g1352 . 46 475 Core Cell Cycle Gene Families AT1G15570 54.1 2.7e-120 429.1
HCH12g0338 . 206 483 Core Cell Cycle Gene Families AT1G15570 60.8 1.3e-95 347.1
HCH13g0150 . 206 481 Core Cell Cycle Gene Families AT1G15570 53.6 9.4e-81 297.7
HCH4g1352 . 4 475 Core Cell Cycle Gene Families AT1G80370 53.9 1.2e-120 430.3
HCH13g0150 . 206 471 Core Cell Cycle Gene Families AT1G80370 56.4 5.6e-81 298.5
HCH4g0610 . 97 358 Core Cell Cycle Gene Families AT1G80370 52.3 4.8e-72 268.9
HCH4g0610 . 3 365 Core Cell Cycle Gene Families AT5G43080 59.3 1.3e-114 409.8
HCH12g0581 . 3 370 Core Cell Cycle Gene Families AT5G43080 53.7 9.8e-102 367.1
HCH7g0708 . 27 334 Core Cell Cycle Gene Families AT5G43080 50.6 4.0e-79 292.0
HCH12g0338 . 207 476 Core Cell Cycle Gene Families AT5G43080 54.4 4.4e-78 288.5
HCH4g0400 . 177 454 Core Cell Cycle Gene Families AT5G43080 52.0 8.4e-77 284.3
HCH4g1352 . 199 475 Core Cell Cycle Gene Families AT5G43080 51.4 1.6e-75 280.0
HCH4g0610 . 1 365 Core Cell Cycle Gene Families AT1G47210 57.4 3.7e-115 411.8
HCH12g0581 . 1 370 Core Cell Cycle Gene Families AT1G47210 53.1 1.2e-105 380.2
HCH7g0708 . 65 333 Core Cell Cycle Gene Families AT1G47210 55.4 1.3e-83 307.0
HCH12g0338 . 208 476 Core Cell Cycle Gene Families AT1G47210 53.5 3.4e-76 282.3
HCH4g0400 . 177 443 Core Cell Cycle Gene Families AT1G47210 51.3 1.7e-75 280.0
HCH4g1352 . 199 470 Core Cell Cycle Gene Families AT1G47210 51.6 2.2e-75 279.6
HCH4g0610 . 69 363 Core Cell Cycle Gene Families AT1G47220 58.0 3.5e-93 338.6
HCH12g0581 . 88 368 Core Cell Cycle Gene Families AT1G47220 56.4 1.1e-86 317.0
HCH13g0150 . 195 471 Core Cell Cycle Gene Families AT1G47220 50.2 3.1e-73 272.3
HCH12g0338 . 193 473 Core Cell Cycle Gene Families AT1G47220 50.2 7.1e-70 261.2
HCH4g0610 . 1 363 Core Cell Cycle Gene Families AT1G47230 57.1 6.5e-112 401.0
HCH12g0581 . 1 370 Core Cell Cycle Gene Families AT1G47230 55.4 1.3e-107 386.7
HCH7g0708 . 54 333 Core Cell Cycle Gene Families AT1G47230 54.4 6.3e-83 304.7
HCH12g0338 . 208 476 Core Cell Cycle Gene Families AT1G47230 52.2 5.0e-72 268.5
HCH4g1352 . 200 470 Core Cell Cycle Gene Families AT1G47230 51.3 1.9e-71 266.5
HCH9g0977 . 1 448 Core Cell Cycle Gene Families AT4G37490 51.0 1.1e-107 387.1
HCH13g1311 . 141 376 Core Cell Cycle Gene Families AT4G37490 50.2 8.7e-60 228.0
HCH9g0977 . 1 339 Core Cell Cycle Gene Families AT5G06150 52.3 2.9e-79 292.4
HCH2g1311 . 118 306 Core Cell Cycle Gene Families AT5G06150 63.0 2.1e-61 233.0
HCH12g0061 . 156 328 Core Cell Cycle Gene Families AT5G06150 52.6 2.5e-46 183.0
HCH13g1311 . 137 309 Core Cell Cycle Gene Families AT5G06150 53.2 2.8e-45 179.5
HCH13g0981 . 30 197 Core Cell Cycle Gene Families AT5G06150 53.0 1.5e-43 173.7
HCH9g0977 . 1 403 Core Cell Cycle Gene Families AT3G11520 53.6 3.0e-96 349.0
HCH2g1311 . 24 365 Core Cell Cycle Gene Families AT3G11520 51.3 6.4e-86 314.7
HCH13g0981 . 26 256 Core Cell Cycle Gene Families AT3G11520 51.3 9.2e-61 231.1
HCH13g1311 . 144 370 Core Cell Cycle Gene Families AT3G11520 50.7 1.1e-58 224.2
HCH2g1311 . 1 403 Core Cell Cycle Gene Families AT2G26760 56.3 8.8e-112 400.6
HCH9g0977 . 151 440 Core Cell Cycle Gene Families AT2G26760 61.0 2.1e-97 352.8
HCH14g0711 . 19 428 Core Cell Cycle Gene Families AT2G17620 60.1 1.4e-126 449.9
HCH13g1311 . 58 415 Core Cell Cycle Gene Families AT2G17620 62.0 1.9e-115 412.9
HCH13g0981 . 4 299 Core Cell Cycle Gene Families AT2G17620 68.0 5.7e-112 401.4
HCH12g0061 . 34 433 Core Cell Cycle Gene Families AT2G17620 53.9 2.7e-109 392.5
HCH14g0711 . 23 385 Core Cell Cycle Gene Families AT4G35620 60.3 1.7e-107 386.3
HCH13g1311 . 34 370 Core Cell Cycle Gene Families AT4G35620 57.2 1.9e-95 346.3
HCH13g0981 . 18 256 Core Cell Cycle Gene Families AT4G35620 72.3 6.5e-91 331.3
HCH12g0061 . 34 387 Core Cell Cycle Gene Families AT4G35620 53.5 2.5e-90 329.3
HCH12g0061 . 1 430 Core Cell Cycle Gene Families AT1G20610 65.1 4.2e-147 518.1
HCH14g0711 . 36 428 Core Cell Cycle Gene Families AT1G20610 59.2 2.3e-121 432.6
HCH13g1311 . 66 413 Core Cell Cycle Gene Families AT1G20610 62.6 3.3e-115 412.1
HCH13g0981 . 1 299 Core Cell Cycle Gene Families AT1G20610 64.8 1.4e-105 380.2
HCH12g0061 . 1 327 Core Cell Cycle Gene Families AT1G76310 62.6 9.2e-105 377.1
HCH14g0711 . 1 325 Core Cell Cycle Gene Families AT1G76310 53.5 6.4e-82 301.2
HCH13g1311 . 34 309 Core Cell Cycle Gene Families AT1G76310 57.1 6.2e-77 284.6
HCH13g0981 . 1 196 Core Cell Cycle Gene Families AT1G76310 61.1 8.1e-61 231.1
HCH2g1311 . 139 305 Core Cell Cycle Gene Families AT1G76310 52.7 8.5e-42 167.9
HCH9g0977 . 174 339 Core Cell Cycle Gene Families AT1G76310 53.0 3.6e-40 162.5
HCH4g0920 . 1 334 Core Cell Cycle Gene Families AT1G70210 61.3 1.5e-107 386.3
HCH1g1001 . 1 326 Core Cell Cycle Gene Families AT1G70210 61.5 1.0e-103 373.6
HCH4g1861 . 45 329 Core Cell Cycle Gene Families AT4G34160 54.8 4.5e-76 282.0
HCH7g0676 . 77 348 Core Cell Cycle Gene Families AT4G34160 52.3 3.4e-68 255.8
HCH14g0311 . 56 338 Core Cell Cycle Gene Families AT4G34160 50.3 2.9e-67 252.7
HCH12g0596 . 65 288 Core Cell Cycle Gene Families AT4G34160 56.7 8.4e-67 251.1
HCH14g0311 . 58 330 Core Cell Cycle Gene Families AT5G67260 50.2 1.3e-70 263.8
HCH4g1861 . 40 328 Core Cell Cycle Gene Families AT5G67260 50.7 2.8e-68 256.1
HCH12g0596 . 67 294 Core Cell Cycle Gene Families AT5G67260 51.1 6.1e-63 238.4
HCH14g0311 . 63 330 Core Cell Cycle Gene Families AT3G50070 52.6 5.4e-71 265.0
HCH4g0259 . 69 282 Core Cell Cycle Gene Families AT5G65420 55.9 1.8e-63 239.6
HCH13g1196 . 52 250 Core Cell Cycle Gene Families AT5G65420 57.9 1.1e-60 230.3
HCH13g1196 . 50 231 Core Cell Cycle Gene Families AT5G10440 56.3 1.6e-57 219.5
HCH4g0259 . 64 242 Core Cell Cycle Gene Families AT5G10440 57.2 1.3e-54 209.9
HCH14g0245 . 1 273 Core Cell Cycle Gene Families AT5G27620 68.1 3.1e-104 375.2
HCH2g1221 . 1 88 Core Cell Cycle Gene Families AT2G27960 90.9 5.8e-43 169.9
HCH3g1185 . 1 88 Core Cell Cycle Gene Families AT2G27960 88.6 8.3e-42 166.0
HCH2g1221 . 1 76 Core Cell Cycle Gene Families AT2G27970 92.1 2.2e-39 157.9
HCH3g1185 . 1 79 Core Cell Cycle Gene Families AT2G27970 88.6 2.8e-39 157.5
HCH1g0613 . 4 1024 Core Cell Cycle Gene Families AT3G12280 71.3 0.0e+00 1390.6
HCH4g1000 . 1 467 Core Cell Cycle Gene Families AT1G02970 61.7 6.0e-161 564.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012604 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 29