Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0596 ATGCAAAACCACTCTTCCAATAACATGTCTAAATCTCACTGTTTATCAAATTCTACATTTCTTCTCGATGATTCCTTGTTCTGCTTCGAAGAGCATTGGGAGGAGGAGGAAGAAGAAGAAGAGGAGGAGGACTTCCATTACCGACAAAAGAATATTAATATCAATTCTCCAAACTCTGTAATTTTGTCGGGGCAGGACTTTTTTTGGGAAGATGAAGAACTGGTGTCTTTGTTTTCAAAGGAACACAAAAACAAGCTTCATAATTCTCTCCAAAATAACCCAACTCTAGAAACAGCTCGTAGGAGAGGTGTAGAATTGATACTGAAAGCAAATGCCCACTATTCTTTCAATGCACTTACTGCTGTTTTAGCCGTTGATTATGTCGATAGGTTTCTTTCAAGTATCCATTTTCAGATAGAAAAACCATGGATGACACATCTCACTGCTGTTGCTTGTATTTCCATTGCTGCCAAAGTGGAAGAAACTCAAGTCCCACTTCTTTTAGACATCCAGGTGGAGGAAAATGAGTATTTCTTCGAAGCGAAAACGATTAAAAGAATGGAGATTCTTGTTCTCTCCACGCTTCAATGGAAAATGAATCCTGTAAATCCACTTTCATTTCTTGATTATATCATAAGACGGGTTGGTTTCAAAGACCATCTTTGTTCCGAATTTCTTGAAAGATGTGAAAGATTACTTCTCTCTGTTATTTCAGATTCAAGATTCGTGTGTTTTCTTCCATCAGTAATAGCGAGCGCTATAATGCTTCAAGTTATAAATGACATAGAGCCCTGTGTCTTGGCCAAATACCAAGACCAGCTTCTTGGTTTTCTCCGAACCGACAAGGATAAAGTAAACGACTGCAGTAGATTTATTGAGGAAGAAAGAAAGAAATGGAATGGATATAGAATGGGTTCAATTCCGGGCAGCCCGAAAGGGATAATGGAGTTATCGTGGGCTGGGGTATTATCGGAAGGATCGTCGCCGGAGCAAGTAAGTAAGAAGAGAAAGATGGAGATGGCAAAGTTGACGACAGAGGAAGAATTTCAGGGGAGTCGTTGA 1062 39.55 MQNHSSNNMSKSHCLSNSTFLLDDSLFCFEEHWEEEEEEEEEEDFHYRQKNININSPNSVILSGQDFFWEDEELVSLFSKEHKNKLHNSLQNNPTLETARRRGVELILKANAHYSFNALTAVLAVDYVDRFLSSIHFQIEKPWMTHLTAVACISIAAKVEETQVPLLLDIQVEENEYFFEAKTIKRMEILVLSTLQWKMNPVNPLSFLDYIIRRVGFKDHLCSEFLERCERLLLSVISDSRFVCFLPSVIASAIMLQVINDIEPCVLAKYQDQLLGFLRTDKDKVNDCSRFIEEERKKWNGYRMGSIPGSPKGIMELSWAGVLSEGSSPEQVSKKRKMEMAKLTTEEEFQGSR 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3496908 3498244 - evm.model.ptg000002l.1063 HCH12g0596 555443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0596 353 CDD CYCLIN_AtCycD-like_rpt1 99 197 - -
HCH12g0596 353 Gene3D - 88 200 - -
HCH12g0596 353 Pfam Cyclin, N-terminal domain 80 200 IPR006671 -
HCH12g0596 353 FunFam CYCLIN D32 201 290 - -
HCH12g0596 353 SMART Cyclin_C_2 202 346 IPR004367 -
HCH12g0596 353 MobiDBLite consensus disorder prediction 328 353 - -
HCH12g0596 353 CDD CYCLIN_AtCycD-like_rpt2 202 288 - -
HCH12g0596 353 FunFam D6-type cyclin 83 200 - -
HCH12g0596 353 SUPERFAMILY Cyclin-like 68 200 IPR036915 -
HCH12g0596 353 MobiDBLite consensus disorder prediction 330 353 - -
HCH12g0596 353 PANTHER CYCLINS 50 258 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
HCH12g0596 353 Gene3D - 201 289 - -
HCH12g0596 353 SMART cyclin_7 105 193 IPR013763 -
HCH12g0596 353 Pfam Cyclin, C-terminal domain 202 294 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0596 HCH-Chr12:3496908 HCH4g1861 HCH-Chr4:48653593 7.40E-73 dispersed
HCH12g0596 HCH-Chr12:3496908 HCH14g0311 HCH-Chr14:31788478 3.80E-61 wgd
HCH12g0596 HCH-Chr12:3496908 HCH4g0620 HCH-Chr4:4058121 7.30E-89 wgd
HCH12g0596 HCH-Chr12:3496908 HCH7g0676 HCH-Chr7:7566241 4.60E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0596 K14505 - csv:101218302 389.423