Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0602 ATGGCTGTGGAGCTAATGGTTGGTTTTGGAAATTCCAGTGCTTCTAATTTCACTCCCAAAATTGAAGATAATGCAGCAGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGAATCCAAAGCGTTCAGAATTTCCTCAGATTAATGTCTCATTCTCACTCGCAACAAGATCATTCTTCAACTTCTTCTCCTGATTCCACCACTCAATCCTACGAAGCCGTTGCTGATTCCGTTGTCAATAAATTCAAAAAAGTCATTTCTTTACTTGACCGTAATAGAACCGGCCATGCCCGCTTTCGAAGAGCGCCGCCGCCGCCGGTTGTTTCATCCCCTCCACCTCCTTCTCTTCCTAAACCCAACCCAACCCAACAAGATCCAACTCCATCATCATCTTCTTCCATTCCAATTCCAATTCCACCGATTCCGACAAAGAAACAAGACCAAGTTTCGGCTTTTAAGGTTTATTGTCCAACCCCTATTGTTCGTTTACCCCCTCTCCCTAAAAATGGATCTTTAGACAGGAAAGATTCTTCTACCACCATTAACTTCGCCGCATCGCCACCGATCTCCGCCGCGAATTCTTATATTTCATCGTTAACCGGAGAAACCGAAAGTTTACAGCCTTCTTTATCATCTGGGTTTCAATTTACACACATTTCCCAAGTTTCCTCCGCCGGAAAGCCTCCTCTTTCATCGTCCTCGCTTAAGAGAAAATGCAATTCCATGGATGATTCCGCCATCAAGTGTGGCTCGTCTTCTGGCCGCTGCCACTGTTCCAAAAAAAGGAAAAATCGGATTAAAAGGGTTATTAGGGTTCCGGCAGTAAGTTCAAAACTTGCAGATATCCCACCGGACGATTATTCATGGAGAAAGTACGGCCAAAAACCCATTAAAGGCTCTCCTCATCCAAGAGGATATTACAAGTGTAGCAGTTTAAGAGGGTGTCCAGCGAGGAAACACGTGGAGCGTGCCTTAGACGATCCAACGATGCTGATTGTAACGTACGAAAATGATCATAATCATGCCCCCTCGATCACCGAATCACCTGCCGCTCTTGTTCTCGAATCATCATAG 1074 45.25 MAVELMVGFGNSSASNFTPKIEDNAAAVSAVQEAASAGIQSVQNFLRLMSHSHSQQDHSSTSSPDSTTQSYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPPPPVVSSPPPPSLPKPNPTQQDPTPSSSSSIPIPIPPIPTKKQDQVSAFKVYCPTPIVRLPPLPKNGSLDRKDSSTTINFAASPPISAANSYISSLTGETESLQPSLSSGFQFTHISQVSSAGKPPLSSSSLKRKCNSMDDSAIKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAPSITESPAALVLESS 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3532882 3534338 + evm.model.ptg000002l.1057 HCH12g0602 555449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0602 357 ProSiteProfiles WRKY domain profile. 278 344 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0602 357 MobiDBLite consensus disorder prediction 93 147 - -
HCH12g0602 357 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 30 346 IPR044810 GO:0003700(InterPro)
HCH12g0602 357 MobiDBLite consensus disorder prediction 50 71 - -
HCH12g0602 357 Pfam WRKY DNA -binding domain 285 341 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0602 357 SUPERFAMILY WRKY DNA-binding domain 281 342 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0602 357 Pfam Plant zinc cluster domain 236 281 IPR018872 -
HCH12g0602 357 Gene3D WRKY domain 269 344 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0602 357 SMART WRKY_cls 283 343 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH12g0602 357 FunFam WRKY transcription factor 65 267 344 - -
HCH12g0602 357 MobiDBLite consensus disorder prediction 104 124 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0602 HCH-Chr12:3532882 HCH5g1320 HCH-Chr5:50115127 2.40E-47 dispersed
HCH5g0068 HCH-Chr5:412196 HCH12g0602 HCH-Chr12:3532882 5.30E-47 transposed
HCH5g0391 HCH-Chr5:2563894 HCH12g0602 HCH-Chr12:3532882 4.40E-36 transposed
HCH8g1073 HCH-Chr8:46622608 HCH12g0602 HCH-Chr12:3532882 4.50E-56 transposed
HCH12g0602 HCH-Chr12:3532882 HCH14g0304 HCH-Chr14:31675357 4.80E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32685 PF03106 WRKY 3.50E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0602 - - - 0.0