Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH12g0602 | ATGGCTGTGGAGCTAATGGTTGGTTTTGGAAATTCCAGTGCTTCTAATTTCACTCCCAAAATTGAAGATAATGCAGCAGCTGTTTCTGCTGTTCAAGAAGCCGCTTCTGCTGGAATCCAAAGCGTTCAGAATTTCCTCAGATTAATGTCTCATTCTCACTCGCAACAAGATCATTCTTCAACTTCTTCTCCTGATTCCACCACTCAATCCTACGAAGCCGTTGCTGATTCCGTTGTCAATAAATTCAAAAAAGTCATTTCTTTACTTGACCGTAATAGAACCGGCCATGCCCGCTTTCGAAGAGCGCCGCCGCCGCCGGTTGTTTCATCCCCTCCACCTCCTTCTCTTCCTAAACCCAACCCAACCCAACAAGATCCAACTCCATCATCATCTTCTTCCATTCCAATTCCAATTCCACCGATTCCGACAAAGAAACAAGACCAAGTTTCGGCTTTTAAGGTTTATTGTCCAACCCCTATTGTTCGTTTACCCCCTCTCCCTAAAAATGGATCTTTAGACAGGAAAGATTCTTCTACCACCATTAACTTCGCCGCATCGCCACCGATCTCCGCCGCGAATTCTTATATTTCATCGTTAACCGGAGAAACCGAAAGTTTACAGCCTTCTTTATCATCTGGGTTTCAATTTACACACATTTCCCAAGTTTCCTCCGCCGGAAAGCCTCCTCTTTCATCGTCCTCGCTTAAGAGAAAATGCAATTCCATGGATGATTCCGCCATCAAGTGTGGCTCGTCTTCTGGCCGCTGCCACTGTTCCAAAAAAAGGAAAAATCGGATTAAAAGGGTTATTAGGGTTCCGGCAGTAAGTTCAAAACTTGCAGATATCCCACCGGACGATTATTCATGGAGAAAGTACGGCCAAAAACCCATTAAAGGCTCTCCTCATCCAAGAGGATATTACAAGTGTAGCAGTTTAAGAGGGTGTCCAGCGAGGAAACACGTGGAGCGTGCCTTAGACGATCCAACGATGCTGATTGTAACGTACGAAAATGATCATAATCATGCCCCCTCGATCACCGAATCACCTGCCGCTCTTGTTCTCGAATCATCATAG | 1074 | 45.25 | MAVELMVGFGNSSASNFTPKIEDNAAAVSAVQEAASAGIQSVQNFLRLMSHSHSQQDHSSTSSPDSTTQSYEAVADSVVNKFKKVISLLDRNRTGHARFRRAPPPPVVSSPPPPSLPKPNPTQQDPTPSSSSSIPIPIPPIPTKKQDQVSAFKVYCPTPIVRLPPLPKNGSLDRKDSSTTINFAASPPISAANSYISSLTGETESLQPSLSSGFQFTHISQVSSAGKPPLSSSSLKRKCNSMDDSAIKCGSSSGRCHCSKKRKNRIKRVIRVPAVSSKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSLRGCPARKHVERALDDPTMLIVTYENDHNHAPSITESPAALVLESS | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 3532882 | 3534338 | + | evm.model.ptg000002l.1057 | HCH12g0602 | 555449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH12g0602 | 357 | ProSiteProfiles | WRKY domain profile. | 278 | 344 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH12g0602 | 357 | MobiDBLite | consensus disorder prediction | 93 | 147 | - | - | |
HCH12g0602 | 357 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 30 | 346 | IPR044810 | GO:0003700(InterPro) | |
HCH12g0602 | 357 | MobiDBLite | consensus disorder prediction | 50 | 71 | - | - | |
HCH12g0602 | 357 | Pfam | WRKY DNA -binding domain | 285 | 341 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH12g0602 | 357 | SUPERFAMILY | WRKY DNA-binding domain | 281 | 342 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH12g0602 | 357 | Pfam | Plant zinc cluster domain | 236 | 281 | IPR018872 | - | |
HCH12g0602 | 357 | Gene3D | WRKY domain | 269 | 344 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH12g0602 | 357 | SMART | WRKY_cls | 283 | 343 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH12g0602 | 357 | FunFam | WRKY transcription factor 65 | 267 | 344 | - | - | |
HCH12g0602 | 357 | MobiDBLite | consensus disorder prediction | 104 | 124 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0602 | HCH-Chr12:3532882 | HCH5g1320 | HCH-Chr5:50115127 | 2.40E-47 | dispersed | |
HCH5g0068 | HCH-Chr5:412196 | HCH12g0602 | HCH-Chr12:3532882 | 5.30E-47 | transposed | |
HCH5g0391 | HCH-Chr5:2563894 | HCH12g0602 | HCH-Chr12:3532882 | 4.40E-36 | transposed | |
HCH8g1073 | HCH-Chr8:46622608 | HCH12g0602 | HCH-Chr12:3532882 | 4.50E-56 | transposed | |
HCH12g0602 | HCH-Chr12:3532882 | HCH14g0304 | HCH-Chr14:31675357 | 4.80E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32685 | PF03106 | WRKY | 3.50E-25 | CL0274 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH12g0602 | - | - | - | 0.0 |