Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH12g0608 ATGGAAGCTCTATCATTATTACCCTCCTCCATTCAATTCCCATTCCCAAAAAACACCATCAAATTCAAAGACAGAGTTTCCATTCTCGTAAAACCAAAACCAACACTCCAATCTCTCACAACTTCATCACGCAAATGGCGTATCACAGCCACCGCCACGAACCAACCTTCACCAGCATCATATTCCGACATCGACATGGTACGGAACAAAGATGGCATTTTCACCTCCAAACAAAGCAAGGTTGTCGTTCTTTGGGACCTCGATAACAAACCCCCACGTGGCCCTCCGTACGAAGCAGCCATGGCGCTCAAACAAATCGCCCAGCGGTTCGGTCACGTCATCGACATGGCAGCTTACGCTAACCGTCACGCTTTTATCCATTTACCTCAATGGGTTGCCGAAGAGCGCCGTGAACGCCGTCAACTGGACATCCTTGAACGCAAAGGTTTGTTAACTCCGTCTGAATCATCTTATGTTTGTACGGTCTGTGGTCGTAAATGCAAAACAAATCTAGACCTTAAAAAACATTTCAAGCAATTACATGAGCGTGAGCGTCAAAAGAAATTGAATAGAATGAGGTCTCTTAAAGGTAAAAAGAGACAGCGTTATAAAGAGAGGTTTATATCTGGGAATCATAAGTACAATGAAGCTGCTAGAACCTTAATTACTCCGAAAATTGGATATGGGTTGGCCTCTGAATTGAGGCGTGCTGGGGTTTTTGTTAAGACTGTGGAGGATAAGCCACAGGCGGCTGATTGGGCTTTGAAGAGGCAGATTCAGCATTCTATGAGTCGTGGTGTTGATTGGATGTTTTTGGTTTCGGATGATTCGGATTTTTCGGAGATGTTAAGGAGGGCAAAGGAGGCGAATTTAGGGACCGTTGTGGTTGGCGATCGTGATGGGGCATTGGGGAGGTATGCTGATTTGTGGGTTCCGTGGAATGGGGTGGAAAGTGGGAAAATTTCTGATGAGGATTTGGTGCCTAAGAGATGGAGGGGAGGTGTGGATTTGGATCAAGATGATGGCTTTTCGGTTTCTTGTTTTGATGGGGATACTGAAGTTGGGAGTGATTTGGAGAGTGTAGTGGATGAGCTTGTTTCTTTTAATACCGGGTTTGAAAGCTTTAGGATTTCTGCCTTCTCAGAAGGGGAAGATGAGGAAGATGAATGGATCATGTGA 1179 45.21 MEALSLLPSSIQFPFPKNTIKFKDRVSILVKPKPTLQSLTTSSRKWRITATATNQPSPASYSDIDMVRNKDGIFTSKQSKVVVLWDLDNKPPRGPPYEAAMALKQIAQRFGHVIDMAAYANRHAFIHLPQWVAEERRERRQLDILERKGLLTPSESSYVCTVCGRKCKTNLDLKKHFKQLHERERQKKLNRMRSLKGKKRQRYKERFISGNHKYNEAARTLITPKIGYGLASELRRAGVFVKTVEDKPQAADWALKRQIQHSMSRGVDWMFLVSDDSDFSEMLRRAKEANLGTVVVGDRDGALGRYADLWVPWNGVESGKISDEDLVPKRWRGGVDLDQDDGFSVSCFDGDTEVGSDLESVVDELVSFNTGFESFRISAFSEGEDEEDEWIM 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3575068 3576246 + evm.model.ptg000002l.1051 HCH12g0608 555455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH12g0608 392 Coils Coil 178 198 - -
HCH12g0608 392 SMART c2h2final6 158 181 IPR013087 -
HCH12g0608 392 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 27 385 - -
HCH12g0608 392 ProSiteProfiles Zinc finger C2H2 type domain profile. 158 186 IPR013087 -
HCH12g0608 392 CDD PIN_LabA-like 168 298 - -
HCH12g0608 392 ProSitePatterns Zinc finger C2H2 type domain signature. 160 181 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0608 HCH-Chr12:3575068 HCH6g0979 HCH-Chr6:44598742 3.10E-56 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32686 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH12g0608 - - - 0.0